BAC Information

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BAC

Clone NameB6Ng01-262B03
Chromosome5 (Build37)
Map Location 116,060,240 - 116,186,246
singlet/doubletdoublet
Overlap geneGcn1l1, LOC100042199, Rab35, Ccdc64
Upstream geneBC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp
Downstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262B03.bB6Ng01-262B03.g
ACCGA066582GA066583
length1,004188
definitionB6Ng01-262B03.b B6Ng01-262B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,185,651 - 116,186,246)(116,060,240 - 116,060,427)
sequence
gaattcatgcttcttactacatggttagtaaacagaacagactagggccc
tatgctttcctttgagataaaccgtaatacctaaggactcactaggttcc
acctcttaaaggctccaccatctcccaacagcagaatgctggagaccacg
actttagcaatatggactttggtggggggcattaagacccaaatgatagc
aggcttcagggtacactggtaggcattctatttattcttcccttacatgt
tttcatgtaaagaaaaaaaaaagctctaatttcaagaatatctctggcga
gaccttttatattaaatgtagacccctcctaagtacctctccttttgata
ttttttagtaataaaatgagaagtgtaaacaaagcatttctgcggcatac
tggggctaaatggtcgtcctgaaatcagatacatcatcatttgagtcctg
aattaagccagctgcgtgtttttcaggaaacactgtttctccttgaactg
aaagggtgatgctgtatagcattcagattttgtcaagaattaacaaaaca
gttaagaaaaacagttggtaatgataactcatacctcctcatttattgca
gatgtaagcctttttggaaaattcatatctatctcaaggtgctgacagtg
agctaatggtgcctcaatacttaaagactttaataatgagcactgatata
gtagtttttgagacagaatctcacacagtagcccagcgtgaccctgaatt
tactacatagctcagctggcctcaaaactgcagcaaccttcctgcttttg
cctcctgagttcccgtagttgccatctgagaaataaatattattcttttg
attctgtattcaatgacacgtgacaatatttggaaggtctgtataactca
atgaactaactttttccaaatgatcaaagcatgtgattatagaattggtc
atacactgatcacggtccatttcatgggatcatctcaatattagtaggca
ctct
ctgttgctgagggccctcagctctctccacactgtcgcctctcggccgtt
ttatcatccttgtttcctgtagtagacgtggttccatcccctctgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtggc
gatgcggttttcctcaatcttttcttcttgttgggcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116185651_116186246
seq2: B6Ng01-262B03.b_43_638 (reverse)

seq1  ATAAATGAGGAGGTATGAGTTATCATTACCAACTGTTTTTCTTAACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAGGAGGTATGAGTTATCATTACCAACTGTTTTTCTTAACTGTT  50

seq1  TTGTTAATTCTTGACAAAATCTGAATGCTATACAGCATCACCCTTTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATTCTTGACAAAATCTGAATGCTATACAGCATCACCCTTTCAGT  100

seq1  TCAAGGAGAAACAGTGTTTCCTGAAAAACACGCAGCTGGCTTAATTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGAAACAGTGTTTCCTGAAAAACACGCAGCTGGCTTAATTCAGG  150

seq1  ACTCAAATGATGATGTATCTGATTTCAGGACGACCATTTAGCCCCAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATGATGATGTATCTGATTTCAGGACGACCATTTAGCCCCAGTAT  200

seq1  GCCGCAGAAATGCTTTGTTTACACTTCTCATTTTATTACTAAAAAATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCAGAAATGCTTTGTTTACACTTCTCATTTTATTACTAAAAAATATC  250

seq1  AAAAGGAGAGGTACTTAGGAGGGGTCTACATTTAATATAAAAGGTCTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGAGGTACTTAGGAGGGGTCTACATTTAATATAAAAGGTCTCGC  300

seq1  CAGAGATATTCTTGAAATTAGAGCTTTTTTTTTTCTTTACATGAAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATATTCTTGAAATTAGAGCTTTTTTTTTTCTTTACATGAAAACAT  350

seq1  GTAAGGGAAGAATAAATAGAATGCCTACCAGTGTACCCTGAAGCCTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGAAGAATAAATAGAATGCCTACCAGTGTACCCTGAAGCCTGCTA  400

seq1  TCATTTGGGTCTTAATGCCCCCCACCAAAGTCCATATTGCTAAAGTCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGGTCTTAATGCCCCCCACCAAAGTCCATATTGCTAAAGTCGTG  450

seq1  GTCTCCAGCATTCTGCTGTTGGGAGATGGTGGAGCCTTTAAGAGGTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGCATTCTGCTGTTGGGAGATGGTGGAGCCTTTAAGAGGTGGAA  500

seq1  CCTAGTGAGTCCTTAGGTATTACGGTTTATCTCAAAGGAAAGCATAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGAGTCCTTAGGTATTACGGTTTATCTCAAAGGAAAGCATAGGGC  550

seq1  CCTAGTCTGTTCTGTTTACTAACCATGTAGTAAGAAGCATGAATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTGTTCTGTTTACTAACCATGTAGTAAGAAGCATGAATTC  596

seq1: chr5_116060240_116060427
seq2: B6Ng01-262B03.g_70_257

seq1  CTGTTGCTGAGGGCCCTCAGCTCTCTCCACACTGTCGCCTCTCGGCCGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTGAGGGCCCTCAGCTCTCTCCACACTGTCGCCTCTCGGCCGTT  50

seq1  TTATCATCCTTGTTTCCTGTAGTAGACGTGGTTCCATCCCCTCTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCCTTGTTTCCTGTAGTAGACGTGGTTCCATCCCCTCTGTGTGT  100

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGC  150

seq1  CAGGCGGTTGAACTCAAGCTGTTGTGCATGTTGGGCAA  188
       | ||||||   ||||| || || | | ||||||||||
seq2  GATGCGGTTTTCCTCAATCTTTTCTTCTTGTTGGGCAA  188