BAC Information

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BAC

Clone NameB6Ng01-262D22
Chromosome5 (Build37)
Map Location 63,642,641 - 63,755,294
singlet/doubletdoublet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262D22.bB6Ng01-262D22.g
ACCGA066711GA066712
length1,1841,147
definitionB6Ng01-262D22.b B6Ng01-262D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,754,121 - 63,755,294)(63,642,641 - 63,643,669)
sequence
gaattctttttctttctttttaaaaatattttttattattacgtattttc
ctcaattacatttagaatgctatcccaaaagtccccaataccctccgccc
cccacttccctacccacccattcccattttttggccctggcatttaatcc
tttacattcaacaaatcaaggcaaaagacttatgcttttgtgcaaacaca
catagagagactgtctttcagatgaactcaagaccttcctaaagtcgagg
atgaaacactaatgcagtataattagggcttttccatatatagcaatcat
ctataggagactgggcagaaagacaagaattgcagaagttctagcaataa
tgagtcatttttcaaatgtgaaacttttagtattaatatttaatattaat
ggtattatgcatatgtgtggatgctatatctataagaaacagtttctaag
cttaacttgtaagttcttcacgcccttgctgagcagagcaactttgactt
catacgacagaactggagggtctttgtgacaggtttctgacctggcttag
gattcaactcacagaacatcttcttccctggtcagttctccactttcagc
tcaatctggggagtctcagcagagtgtttgattacttaccctgtgtcgct
cactgactttagcttaccattgtcaatatctagagaggaaataactcttg
accatcttgagaactttcttaatgcaacaacttgcagtttctgcagacat
tttaaaaaagtatttgaaagcaataaatgataccatagtaagtagtaaga
ttgaaaaccttaatggggaaatgttacaatgaaagtagtctctgtccaca
tttccacttcccccttcccccacattatcctatggggtaaaaaaataaaa
caaagaaaaaaattagtatttagactcagatgtattgaggaaattggtac
tgaggaaaaagattaatggtattttcaacaaaaatttcattccatttgtt
acatctagtttggccagtctgggtccaacaaatggcacatattattctta
tacatgggcattttgaagaatacttattggtaatattgtttacacctaca
ataaaattatttttaagaataataaggtgctaaatactaactggctatgg
ttaattacctaaataacttattattataaacaca

gaattcagagatctacctgccttcataagcacagataataggctaactgg
gtgagatctggctctgagatcaccatctcctcactgcttaggcctacact
agctctgttccaggctgaccttgaactgagaaatctgcctgtctttgtga
gcacaaacaataaacatagctggatgggatcttgccctatgatcactccc
tgaattgcttttatctccttccttgatatctttctgactagctgtctcac
agtacagctgcctctgttctgttaggtctgtgtcacctctcatataattc
atattgcatattttgcatagttgagaagttatatataattgaacttatgt
tttcagagttttttcccacagccttaagagatgtcctgtatttaccaatt
tgctgagacacatcctggcctcccatcctttgcatcctcgagctgcttct
aattatcatagagtcatttaccaaggcagggagaacatctcctgaaggag
aaacataaagtaaattatgtacattattatacaaataaaccccatgtctg
cagcaaccattaaaactcatggaggtccagttcctgctacttctgctcca
agggtgaaaactatgatagtacttggcaaaattatatctaagtatcttct
gtaatctatacaattatagtagggcaaatggttgctacagtaataaagag
acttgtcacacacacacacacacacacacacacacacacacacacactaa
gaagtccagtgaactttattctcaagatattagggacattctaataaata
tagaaatacgaaaacacattaatagaggatgcattggctacaaggtgtaa
attaaatcaaaatatcaatcaagaaattactgtggaacaaatgaccttga
gatatgtgcaaaacttctgtctgttagcagcttgccttatttatggtcat
gagacctagtaaaacacaataaatcgaaaaatataattaaaaaattttca
aaacaaataaaagcatgcataaacaaattcaaagtaccaatatagtttta
ttattttaatttaatttaatttatttttaatttttttaataacggtattt
ccctcaaataacatttcaaatgctatccaaagtccccaatatcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_63754121_63755294
seq2: B6Ng01-262D22.b_44_1227 (reverse)

seq1  TGTGTTTATAATAATAA-TTATATTAGTAAT--AACATA-CCAGTAAGTA  46
      ||||||||||||||||| |||| |  |||||  | |||| ||||| ||| 
seq2  TGTGTTTATAATAATAAGTTATTTAGGTAATTAACCATAGCCAGTTAGT-  49

seq1  ATTTAGCACTTTATTATTCTT-AAAATAATTTTA-TGTA-GTGTAAAC-A  92
      ||||||||| ||||||||||| |||||||||||| |||| |||||||| |
seq2  ATTTAGCACCTTATTATTCTTAAAAATAATTTTATTGTAGGTGTAAACAA  99

seq1  TATTACCAAT-AGTATTCTTCAAAATGCCCATGTATAAGAAT-ATATGTG  140
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TATTACCAATAAGTATTCTTCAAAATGCCCATGTATAAGAATAATATGTG  149

seq1  CCATTTGTTGGACCCAGACTGGCC-AACTAGATGTAACAAATGGAATGAA  189
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCATTTGTTGGACCCAGACTGGCCAAACTAGATGTAACAAATGGAATGAA  199

seq1  ATTTTTGTTGAAAATACCCTTAATCTTTTTCCTCAGTACCAATTTCCTCA  239
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTTTGTTGAAAATACCATTAATCTTTTTCCTCAGTACCAATTTCCTCA  249

seq1  ATACATCTGAGTCTAAATACTAATTTTTTTCTTTGTTTTATTTTTTTACC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTGAGTCTAAATACTAATTTTTTTCTTTGTTTTATTTTTTTACC  299

seq1  CCATAGGATAATGTGGGGGAAGGGGGAAGTGGAAATGTGGACAGAGACTA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGATAATGTGGGGGAAGGGGGAAGTGGAAATGTGGACAGAGACTA  349

seq1  CTTTCATTGTAACATTTCCCCATTAAGGTTTTCAATCTTACTACTTACTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTGTAACATTTCCCCATTAAGGTTTTCAATCTTACTACTTACTA  399

seq1  TGGTATCATTTATTGCTTTCAAATACTTTTTTAAAATGTCTGCAGAAACT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCATTTATTGCTTTCAAATACTTTTTTAAAATGTCTGCAGAAACT  449

seq1  GCAAGTTGTTGCATTAAGAAAGTTCTCAAGATGGTCAAGAGTTATTTCCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGTTGCATTAAGAAAGTTCTCAAGATGGTCAAGAGTTATTTCCT  499

seq1  CTCTAGATATTGACAATGGTAAGCTAAAGTCAGTGAGCGACACAGGGTAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATATTGACAATGGTAAGCTAAAGTCAGTGAGCGACACAGGGTAA  549

seq1  GTAATCAAACACTCTGCTGAGACTCCCCAGATTGAGCTGAAAGTGGAGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAAACACTCTGCTGAGACTCCCCAGATTGAGCTGAAAGTGGAGAA  599

seq1  CTGACCAGGGAAGAAGATGTTCTGTGAGTTGAATCCTAAGCCAGGTCAGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGGGAAGAAGATGTTCTGTGAGTTGAATCCTAAGCCAGGTCAGA  649

seq1  AACCTGTCACAAAGACCCTCCAGTTCTGTCGTATGAAGTCAAAGTTGCTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCACAAAGACCCTCCAGTTCTGTCGTATGAAGTCAAAGTTGCTC  699

seq1  TGCTCAGCAAGGGCGTGAAGAACTTACAAGTTAAGCTTAGAAACTGTTTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCAAGGGCGTGAAGAACTTACAAGTTAAGCTTAGAAACTGTTTC  749

seq1  TTATAGATATAGCATCCACACATATGCATAATACCATTAATATTAAATAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATATAGCATCCACACATATGCATAATACCATTAATATTAAATAT  799

seq1  TAATACTAAAAGTTTCACATTTGAAAAATGACTCATTATTGCTAGAACTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTAAAAGTTTCACATTTGAAAAATGACTCATTATTGCTAGAACTT  849

seq1  CTGCAATTCTTGTCTTTCTGCCCAGTCTCCTATAGATGATTGCTATATAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATTCTTGTCTTTCTGCCCAGTCTCCTATAGATGATTGCTATATAT  899

seq1  GGAAAAGCCCTAATTATACTGCATTAGTGTTTCATCCTCGACTTTAGGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCCCTAATTATACTGCATTAGTGTTTCATCCTCGACTTTAGGAA  949

seq1  GGTCTTGAGTTCATCTGAAAGACAGTCTCTCTATGTGTGTTTGCACAAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGAGTTCATCTGAAAGACAGTCTCTCTATGTGTGTTTGCACAAAA  999

seq1  GCATAAGTCTTTTGCCTTGATTTGTTGAATGTAAAGGATTAAATGCCAGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGTCTTTTGCCTTGATTTGTTGAATGTAAAGGATTAAATGCCAGG  1049

seq1  GCCAAAAAATGGGAATGGGTGGGTAGGGAAGTGGGGGGCGGAGGGTATTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAATGGGAATGGGTGGGTAGGGAAGTGGGGGGCGGAGGGTATTG  1099

seq1  GGGACTTTTGGGATAGCATTCTAAATGTAATTGAGGAAAATACGTAATAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTTGGGATAGCATTCTAAATGTAATTGAGGAAAATACGTAATAA  1149

seq1  TAAAAAATATTTTTAAAAAGAAAGAAAAAGAATTC  1174
      |||||||||||||||||||||||||||||||||||
seq2  TAAAAAATATTTTTAAAAAGAAAGAAAAAGAATTC  1184


seq1: chr5_63642641_63643669
seq2: B6Ng01-262D22.g_182_1210

seq1  CCTTGAACTGAGAAATCTGCCTGTCTTTGTGAGCACAAACAATAAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTGAGAAATCTGCCTGTCTTTGTGAGCACAAACAATAAACATA  50

seq1  GCTGGATGGGATCTTGCCCTATGATCACTCCCTGAATTGCTTTTATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGGGATCTTGCCCTATGATCACTCCCTGAATTGCTTTTATCTCC  100

seq1  TTCCTTGATATCTTTCTGACTAGCTGTCTCACAGTACAGCTGCCTCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGATATCTTTCTGACTAGCTGTCTCACAGTACAGCTGCCTCTGTT  150

seq1  CTGTTAGGTCTGTGTCACCTCTCATATAATTCATATTGCATATTTTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGGTCTGTGTCACCTCTCATATAATTCATATTGCATATTTTGCAT  200

seq1  AGTTGAGAAGTTATATATAATTGAACTTATGTTTTCAGAGTTTTTTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGAAGTTATATATAATTGAACTTATGTTTTCAGAGTTTTTTCCCA  250

seq1  CAGCCTTAAGAGATGTCCTGTATTTACCAATTTGCTGAGACACATCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTAAGAGATGTCCTGTATTTACCAATTTGCTGAGACACATCCTGG  300

seq1  CCTCCCATCCTTTGCATCCTCGAGCTGCTTCTAATTATCATAGAGTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATCCTTTGCATCCTCGAGCTGCTTCTAATTATCATAGAGTCATT  350

seq1  TACCAAGGCAGGGAGAACATCTCCTGAAGGAGAAACATAAAGTAAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGGCAGGGAGAACATCTCCTGAAGGAGAAACATAAAGTAAATTAT  400

seq1  GTACATTATTATACAAATAAACCCCATGTCTGCAGCAACCATTAAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTATTATACAAATAAACCCCATGTCTGCAGCAACCATTAAAACTC  450

seq1  ATGGAGGTCCAGTTCCTGCTACTTCTGCTCCAAGGGTGAAAACTATGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTCCAGTTCCTGCTACTTCTGCTCCAAGGGTGAAAACTATGATA  500

seq1  GTACTTGGCAAAATTATATCTAAGTATCTTCTGTAATCTATACAATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGCAAAATTATATCTAAGTATCTTCTGTAATCTATACAATTATA  550

seq1  GTAGGGCAAATGGTTGCTACAGTAATAAAGAGACTTGTCACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCAAATGGTTGCTACAGTAATAAAGAGACTTGTCACACACACACA  600

seq1  CACACACACACACACACACACACACACACTAAGAAGTCCAGTGAACTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACTAAGAAGTCCAGTGAACTTTA  650

seq1  TTCTCAAGATATTAGGGACATTCTAATAAATATAGAAATACGAAAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGATATTAGGGACATTCTAATAAATATAGAAATACGAAAACACA  700

seq1  TTAATAGAGGATGCATTGGCTACAAGGTGTAAATTAAATCAAAATATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGAGGATGCATTGGCTACAAGGTGTAAATTAAATCAAAATATCAA  750

seq1  TCAAGAAATTACTGTGGAACAAATGACCTTGAGATATGTGCAAAACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAATTACTGTGGAACAAATGACCTTGAGATATGTGCAAAACTTCT  800

seq1  GTCTGTTAGCAGCTTGCCTTATTTATGGTCATGAGACCTAGTAAAACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTAGCAGCTTGCCTTATTTATGGTCATGAGACCTAGTAAAACACA  850

seq1  ATAAATCGAAAAATATAATTAAAAAATTTTCAAAACAAATAAAAGCATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCGAAAAATATAATTAAAAAATTTTCAAAACAAATAAAAGCATGC  900

seq1  ATAAACAAATTCAAAGTA-CAATATTAGTTTTTTATTTATTTTTATTTA-  948
      |||||||||||||||||| ||||| |||||||    ||||||| ||||| 
seq2  ATAAACAAATTCAAAGTACCAATA-TAGTTTT---ATTATTTTAATTTAA  946

seq1  -TTTATTTATTTTTAATTTTTTTATTA--CGTATTTTCCTC-AATTACAT  994
       || |||||||||||||||||||| ||   |||||| |||| ||| ||||
seq2  TTTAATTTATTTTTAATTTTTTTAATAACGGTATTTCCCTCAAATAACAT  996

seq1  TTCCAATGCTATCCCAAAAGTCCCCCATATCCTCC  1029
      ||| ||||||||||  ||||||||| |||||||||
seq2  TTCAAATGCTATCC--AAAGTCCCCAATATCCTCC  1029


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