BAC Information

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BAC

Clone NameB6Ng01-262E17
Chromosome5 (Build37)
Map Location 70,965,645 - 71,071,051
singlet/doubletdoublet
Overlap genenone
Upstream geneGnpda2
Downstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik, Gabra4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262E17.bB6Ng01-262E17.g
ACCGA066749GA066750
length1,0891,168
definitionB6Ng01-262E17.b B6Ng01-262E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,965,645 - 70,966,747)(71,069,867 - 71,071,051)
sequence
gaattctagttgctcttgtgacaactttttaacagaatttctaaatatag
gctgacttgtgcatacttctctgctgaaatttttttttcttctcccaact
ccctaatctaaagccattttgatttcttttcaatctctcacctattcaat
atttcctaccatttttatactctctggtcatagatttggtacattttgaa
atatttcattctgatgagaaattaagggtgttatatctgaccacaagtat
aagagtttataacacatacagctgaagaaacaaaagaagtggtccagaaa
ccttattaactcaattgcttctcaagtatctgccaaacatatgaagcatc
ctgaagctcagttatcttattaaattggctttcaatgatggaatgaaggt
acctttgtatgccactccactatacagtctgtaagctaccccatgtgagt
tctataacattacttaaaaggcaatctctccagtgtttgaaatcatgaca
tgcacttacgtcatcttaacagcccctgtttctaaccactgataactatg
tgcacctatagtatggagatttcaaagaggagtgtgacagtattgagttt
ttgatataatgcactgtaaattaaatcatatctacttaaaaataaatcat
atcaaatatttatttcctgttacaaaatgtgtttatgagaatacaagaaa
atatggtttttatacctttgcaacatcctggttcctttaaaaatgccctt
taattttgctcaaaagtttgtcataattcttttcaccacccatatttcaa
gttctgtatcatttctcagactatatcttcaacatactcagtcttgatgg
gaactttatcagtgcataatgcttcagttgtggtacagataagctgccta
tcctagaatatattagatagtattgactttgttttgtttgtttgttgttt
ttttgttgttttttttttttttttgtttttaggatattctggatatttct
gtctctcttctggagtttctatgatttcatcttttttaaattttttttta
ttatacgtatttcctcaatacatttagaatgctatccaa

gaattctttaaggtaagtctgaaacaacttctaatgaatttatattctag
aattagtcaaactggtagctcagttaaagctcacagaggcaaaagacact
gacagttatttaaacacaatattgctagttccatctgaatttcacaggag
caagggtatcctggcgacagtaattttactaagagctgaagacctgaaca
ggcaaacctgtgaaaccctactcaaggtcaaagataattcatttttctct
gcagatgattgaataaaagcaaaatttttggattggaatatagaacattt
cacattgggggggggggacgccaaaggtaagatgatttatcttgccattt
catgcattagcagggttttagtaactttcgtttcaaaatcagaattctta
gctacattttaaattcagtgttagttcatcagtgtccagactgcagcata
tatgaagcatctaataatccaagatgcttactatgacaaatggtatgaaa
tttaagtatccagtaaggaacttcaaagttaataataggacaagtgttgc
aactataatatgaaaacttggaaatatatttaaggtattctctcaactac
taaatatcaagttttaatactatggccttacttttaataataacaaaaat
cagacatttaaaatgatttggtttctaattttcatttttttatagaaaat
tctgtttgagtattatgtgtgttaaaacagtagatataagagcacacaaa
gtagatactacctgtgattggttgataactcagagtatgtgaaatgctaa
gtattttctatatttggaaattgtgactaaataaaaattcctttattttt
tagaaagtgtcctacagaaaaagaagtacccatgaatatgtatgactttt
agacaattactaagagatcacaagaacaaaaacctaccctttgtctagtc
cggtaaatacaattgatgcatacatgttaagatgcacagtggctactcct
catatgagatgacagaaacacatgtcacatatagagcatctacatcacat
gcttggagaggaccatcagctgacatcacaggagagtacattttccaagg
ctgtggtagtacttgctgggctgatctaaggttagacacttcactccaca
gaacttggagatagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_70965645_70966747
seq2: B6Ng01-262E17.b_43_1131

seq1  GAATTCTAGTTGCTCTTGTGACAACTTTTTAACAGAATTTCTAAATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTGCTCTTGTGACAACTTTTTAACAGAATTTCTAAATATAG  50

seq1  GCTGACTTGTGCATACTTCTCTGCTGAAATTTTTTTTTCTTCTCCCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTGTGCATACTTCTCTGCTGAAATTTTTTTTTCTTCTCCCAACT  100

seq1  CCCTAATCTAAAGCCATTTTGATTTCTTTTCAATCTCTCACCTATTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATCTAAAGCCATTTTGATTTCTTTTCAATCTCTCACCTATTCAAT  150

seq1  ATTTCCTACCATTTTTATACTCTCTGGTCATAGATTTGGTACATTTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTACCATTTTTATACTCTCTGGTCATAGATTTGGTACATTTTGAA  200

seq1  ATATTTCATTCTGATGAGAAATTAAGGGTGTTATATCTGACCACAAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTCTGATGAGAAATTAAGGGTGTTATATCTGACCACAAGTAT  250

seq1  AAGAGTTTATAACACATACAGCTGAAGAAACAAAAGAAGTGGTCCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTATAACACATACAGCTGAAGAAACAAAAGAAGTGGTCCAGAAA  300

seq1  CCTTATTAACTCAATTGCTTCTCAAGTATCTGCCAAACATATGAAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTAACTCAATTGCTTCTCAAGTATCTGCCAAACATATGAAGCATC  350

seq1  CTGAAGCTCAGTTATCTTATTAAATTGGCTTTCAATGATGGAATGAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTCAGTTATCTTATTAAATTGGCTTTCAATGATGGAATGAAGGT  400

seq1  ACCTTTGTATGCCACTCCACTATACAGTCTGTAAGCTACCCCATGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTATGCCACTCCACTATACAGTCTGTAAGCTACCCCATGTGAGT  450

seq1  TCTATAACATTACTTAAAAGGCAATCTCTCCAGTGTTTGAAATCATGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACATTACTTAAAAGGCAATCTCTCCAGTGTTTGAAATCATGACA  500

seq1  TGCACTTACGTCATCTTAACAGCCCCTGTTTCTAACCACTGATAACTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTACGTCATCTTAACAGCCCCTGTTTCTAACCACTGATAACTATG  550

seq1  TGCACCTATAGTATGGAGATTTCAAAGAGGAGTGTGACAGTATTGAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTATAGTATGGAGATTTCAAAGAGGAGTGTGACAGTATTGAGTTT  600

seq1  TTGATATAATGCACTGTAAATTAAATCATATCTACTTAAAAATAAATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAATGCACTGTAAATTAAATCATATCTACTTAAAAATAAATCAT  650

seq1  ATCAAATATTTATTTCCTGTTACAAAATGTGTTTATGAGAATACAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATATTTATTTCCTGTTACAAAATGTGTTTATGAGAATACAAGAAA  700

seq1  ATATGGTTTTTATACCTTTGCAACATCCTGGTTCCTTTAAAAATGCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTTTATACCTTTGCAACATCCTGGTTCCTTTAAAAATGCCCTT  750

seq1  TAATTTTGCTCAAAAGTTTGTCATAATTCTTTTCACCACCCATATTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCTCAAAAGTTTGTCATAATTCTTTTCACCACCCATATTTCAA  800

seq1  GTTCTGTATCATTTCTCAGACTATATCTTCAACATACTCAGTCTTGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTATCATTTCTCAGACTATATCTTCAACATACTCAGTCTTGATGG  850

seq1  GAACTTTATCAGTGCATAATGCTTCAGTTGTGGTACAGATAAGCTGCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTATCAGTGCATAATGCTTCAGTTGTGGTACAGATAAGCTGCCTA  900

seq1  TCCTAGAATATATTAGATAGTATTGACTTTTGTTTTGTTTTGTTTTGTTT  950
      |||||||||||||||||||||||||||      ||||||||||||   ||
seq2  TCCTAGAATATATTAGATAGTATTGAC------TTTGTTTTGTTT--GTT  942

seq1  TGTTTTTTTTGTTTTGTTTTTTTTTTTTTTTGTTTTTTAGGATATTCTGG  1000
      |||| ||||| | ||||||||||||||||||  |||||||||||||||||
seq2  TGTTGTTTTTTTGTTGTTTTTTTTTTTTTTTTGTTTTTAGGATATTCTGG  992

seq1  ATATTTCTGTCTCTCTTCTGGAGTTTCTATGATTTTCATCTTTTTTTAAA  1050
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  ATATTTCTGTCTCTCTTCTGGAGTTTCTATGA-TTTCATC-TTTTTTAAA  1040

seq1  ATATTTTTTATTATTACGTATTTTCCTCAATTACATTTAGAATGCTATTC  1100
       | |||||||||| |||||| ||||||||| |||||||||||||||| ||
seq2  TTTTTTTTTATTA-TACGTA-TTTCCTCAA-TACATTTAGAATGCTA-TC  1086

seq1  CAA  1103
      |||
seq2  CAA  1089


seq1: chr5_71069867_71071051
seq2: B6Ng01-262E17.g_66_1233 (reverse)

seq1  CTCT-TATCTCCCAGTTTCTGTGGGAGTGAAGATGTCTAACTTTAAGAAC  49
      |||| ||||||| || |||||| ||||||||| |||||||| || |||  
seq2  CTCTCTATCTCCAAG-TTCTGT-GGAGTGAAG-TGTCTAACCTT-AGA--  44

seq1  ACAGCCCACAAAGTACCTACCCACAGCTGTGAAAAATGTACTTCTTCCTG  99
       |||||||  ||||| ||| |||||||  || ||||||||||   |||||
seq2  TCAGCCCAGCAAGTA-CTA-CCACAGCCTTGGAAAATGTACT--CTCCTG  90

seq1  TGGATTGTCAGCTGATGGTCCTCTCAAAGGCATGTGAATGTAGGATGCTC  149
      ||   |||||||||||||||||||| || ||||||| ||||| |||||||
seq2  TG--ATGTCAGCTGATGGTCCTCTCCAA-GCATGTG-ATGTA-GATGCTC  135

seq1  TATATGTGACATGTGTTTCTGTCATCTCATTATGAGGAGTAGCCACTGTG  199
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATATGTGACATGTGTTTCTGTCATCTCA-TATGAGGAGTAGCCACTGTG  184

seq1  CATCTTAACATGTATGCAATCAATTGTATTTACCGGACTAGACAAAGGGT  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATCTTAACATGTATGC-ATCAATTGTATTTACCGGACTAGACAAAGGGT  233

seq1  AGGTTTTTGTTCTTGTGATCTCTTAGTAATTGTCTAAAAGTCATAACATA  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGTTTTTGTTCTTGTGATCTCTTAGTAATTGTCTAAAAGTCAT-ACATA  282

seq1  TTCATGGGTACTTCTTTTTCTGTAGGACACTTTCTAAAAAATAAAGGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGTACTTCTTTTTCTGTAGGACACTTTCTAAAAAATAAAGGAAT  332

seq1  TTTTATTTAGTCACAATTTCCAAATATAGAAAATACTTAGCATTTCACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAGTCACAATTTCCAAATATAGAAAATACTTAGCATTTCACAT  382

seq1  ACTCTGAGTTATCAACCAATCACAGGTAGTATCTACTTTGTGTGCTCTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTTATCAACCAATCACAGGTAGTATCTACTTTGTGTGCTCTTA  432

seq1  TATCTACTGTTTTAACACACATAATACTCAAACAGAATTTTCTATAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTGTTTTAACACACATAATACTCAAACAGAATTTTCTATAAAAA  482

seq1  AATGAAAATTAGAAACCAAATCATTTTAAATGTCTGATTTTTGTTATTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATTAGAAACCAAATCATTTTAAATGTCTGATTTTTGTTATTAT  532

seq1  TAAAAGTAAGGCCATAGTATTAAAACTTGATATTTAGTAGTTGAGAGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTAAGGCCATAGTATTAAAACTTGATATTTAGTAGTTGAGAGAAT  582

seq1  ACCTTAAATATATTTCCAAGTTTTCATATTATAGTTGCAACACTTGTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAATATATTTCCAAGTTTTCATATTATAGTTGCAACACTTGTCCT  632

seq1  ATTATTAACTTTGAAGTTCCTTACTGGATACTTAAATTTCATACCATTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAACTTTGAAGTTCCTTACTGGATACTTAAATTTCATACCATTTG  682

seq1  TCATAGTAAGCATCTTGGATTATTAGATGCTTCATATATGCTGCAGTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTAAGCATCTTGGATTATTAGATGCTTCATATATGCTGCAGTCTG  732

seq1  GACACTGATGAACTAACACTGAATTTAAAATGTAGCTAAGAATTCTGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGATGAACTAACACTGAATTTAAAATGTAGCTAAGAATTCTGATT  782

seq1  TTGAAACGAAAGTTACTAAAACCCTGCTAATGCATGAAATGGCAAGATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACGAAAGTTACTAAAACCCTGCTAATGCATGAAATGGCAAGATAA  832

seq1  ATCATCTTACCTTTGGCGTCCCCCCCCCCCAATGTGAAATGTTCTATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTACCTTTGGCGTCCCCCCCCCCCAATGTGAAATGTTCTATATT  882

seq1  CCAATCCAAAAATTTTGCTTTTATTCAATCATCTGCAGAGAAAAATGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCAAAAATTTTGCTTTTATTCAATCATCTGCAGAGAAAAATGAAT  932

seq1  TATCTTTGACCTTGAGTAGGGTTTCACAGGTTTGCCTGTTCAGGTCTTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGACCTTGAGTAGGGTTTCACAGGTTTGCCTGTTCAGGTCTTCA  982

seq1  GCTCTTAGTAAAATTACTGTCGCCAGGATACCCTTGCTCCTGTGAAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGTAAAATTACTGTCGCCAGGATACCCTTGCTCCTGTGAAATTC  1032

seq1  AGATGGAACTAGCAATATTGTGTTTAAATAACTGTCAGTGTCTTTTGCCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAACTAGCAATATTGTGTTTAAATAACTGTCAGTGTCTTTTGCCT  1082

seq1  CTGTGAGCTTTAACTGAGCTACCAGTTTGACTAATTCTAGAATATAAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCTTTAACTGAGCTACCAGTTTGACTAATTCTAGAATATAAATT  1132

seq1  CATTAGAAGTTGTTTCAGACTTACCTTAAAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAGTTGTTTCAGACTTACCTTAAAGAATTC  1168


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