BAC Information

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BAC

Clone NameB6Ng01-262I11
Chromosome5 (Build37)
Map Location 71,426,356 - 71,427,324
singlet/doubletsinglet
Overlap geneGabra2
Upstream geneGabrg1
Downstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262I11.bB6Ng01-262I11.g
ACCGA066920GA066921
length1,1871,079
definitionB6Ng01-262I11.b B6Ng01-262I11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgagaaataccgaatggctgagaagcatctgaaaaaatg
ttcaacatccttaatcttcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
aggttctagcgaggatgtggagaaagaggaacactcctctattgttggtg
ggattgcaagtttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggaggatcctgcaatgcctctcctgggc
atatatccagaagatgttccaaccagtaagaaggacacattctcctgtat
gttcatagcagccttatttataatagccagaagctggaaagaacacagat
gcccctcaatacaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggaggtcatcatcctgagtgaggtaacccaatcacaaa
agaactcacacaatatgtactcactgataagtggatattagcctggaaac
ttagaatacccaagatataaggtacaatttgctaaacacataaaactcaa
gaagaacgaagaccaaagtgtggacaatttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgtgacg
aaaggttggaccatctagagactgccatatctggggatccatcccataat
cagcctccaaatgctgacaccattgcatacactagcaagattttgctgaa
aagacccagatatagctgtctcttttgagactatgccagggcctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagagcccca
atggaggagctagagaaagtacccaagagctaaaggggtctgcaacccta
tagtggacacattattactaaccagtaccccggagctcttgactctagct
gcatatgttattcagaagaatggtctagtggacatcagtggacgagaggg
tcaattggtcattgcaaacttataatgcctcagtacagggcacgccaagg
ccaaaactggggagttgtgttatagttggtggagtat
gaattccttctttttttattttttccccatttttaattaggtatttagct
catttacatttccaatgctatcccaaaagtcccccatacccacccacccc
cactcccctacccacccactccccctttttggccttgcgttcccctgtac
tggggcatataaagtttgcaagtccaatgggcctctctttccagtgatgg
ccgactaggccatcttttgatacatatgcagctagagtcaagagctccgg
gatactggttagttcattatgttgttccgccttagggttgcagatccctt
taggtccttgggtactttctctagctcctccattgggggccatgcgttcc
atcctctagatgactgtgagcatccacttctgtgtttgctaggcctctgc
ctagtctcataagagacagctatatcagggtcctttcagcaaaatcttgc
tagtgtatgcaatggtgtctgcgtttggcggctgattatggggtggatcc
ctggatatagcagtctctacatggtccatcctttcatctcagcttcaaac
tttgtctctgtaactccttccaagggtgttttgttcccacttctaagaag
gggcatagtgtccacacttccagtccagaattccttcttaaatattgcat
tgctaattatgaatagcttcttaaaaactgtcttaaataaatcagtcaaa
caaatttttaccattaacactgacaatagttaggggttattgcttgatac
tataaatctgatggttaaactaatattacagatgtcattttgggatggtt
gggattaatagtttgcataccacatggattattttagcctaaaaatcaat
atctttccatagaataaaataaaaaacaaattgtatacaattataataaa
tgtgactcatcatatatataccatattacttataacttataaataaagaa
ataaattaatctattgactatatttaaatggtctataaatgtctttacac
tcctgaatgctatgttcaagtgaattcgattctaaataaatataaatttg
accttaacaattacaacctttatcaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71426356_71427324
seq2: B6Ng01-262I11.g_196_1146

seq1  TTGGCCTTGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  50

seq1  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG  100

seq1  CAGCTAGAGTCAAGAGCTCCGGGATACTGGTTAGTTCATTATGTTGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAGTCAAGAGCTCCGGGATACTGGTTAGTTCATTATGTTGTTCC  150

seq1  GCCTTAGGGTTGCAGATCCCTTTAGGTCCTTGGGTACTTTCTCTAGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGGGTTGCAGATCCCTTTAGGTCCTTGGGTACTTTCTCTAGCTCC  200

seq1  TCCATTGGGGGCCATGCGTTCCATCCTCTAGATGACTGTGAGCATCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGGGGCCATGCGTTCCATCCTCTAGATGACTGTGAGCATCCACT  250

seq1  TCTGTGTTTGCTAGGCCTCTGCCTAGTCTCATAAGAGACAGCTATATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTGCTAGGCCTCTGCCTAGTCTCATAAGAGACAGCTATATCAG  300

seq1  GGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCTGCGTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCTGCGTTTGG  350

seq1  CGGCTGATTATGGGGTGGATCCCTGGATATAGCAGTCTCTACATGGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGATTATGGGGTGGATCCCTGGATATAGCAGTCTCTACATGGTCCA  400

seq1  TCCTTTCATCTCAGCTTCAAACTTTGTCTCTGTAACTCCTTCCAAGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCATCTCAGCTTCAAACTTTGTCTCTGTAACTCCTTCCAAGGGTG  450

seq1  TTTTGTTCCCACTTCTAAGAAGGGGCATAGTGTCCACACTTCCAGTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCCACTTCTAAGAAGGGGCATAGTGTCCACACTTCCAGTCCAG  500

seq1  AATTCCTTCTTAAATATTGCATTGCTAATTATGAATAGCTTCTTAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTCTTAAATATTGCATTGCTAATTATGAATAGCTTCTTAAAAAC  550

seq1  TGTCTTAAATAAATCAGTCAAACAAATTTTTACCATTAACACTGACAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAATAAATCAGTCAAACAAATTTTTACCATTAACACTGACAATA  600

seq1  GTTAGGGGTTATTGCTTGATACTATAAATCTGATGGTTAAACTAATATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGGTTATTGCTTGATACTATAAATCTGATGGTTAAACTAATATTA  650

seq1  CAGATGTCATTTTGGGATGGTTGGGATTAATAGTTTGCATACCACATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCATTTTGGGATGGTTGGGATTAATAGTTTGCATACCACATGGA  700

seq1  TTA-TTTAGCCTAAAAATCAATATCTTTCCATAGAATAAAAT-AAAAACA  748
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTATTTTAGCCTAAAAATCAATATCTTTCCATAGAATAAAATAAAAAACA  750

seq1  AATTGTATACAATTATAAATAAATGTGACTCATCATATATATAACCATAT  798
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  AATTGTATACAATTAT-AATAAATGTGACTCATCATATATAT-ACCATAT  798

seq1  TACTTAATAACTTATAAATAAAAAGAAAATAAATTAATCCATATTGGACT  848
      ||||| ||||||||||||||||    |||||||||||||  |||| ||||
seq2  TACTT-ATAACTTATAAATAAA---GAAATAAATTAATC--TATT-GACT  841

seq1  ATATTTAAAATGGGTCTATAAATGTCTTTACAACTTCCTGAAATGCTAAT  898
      |||||||||   ||||||||||||||||||||   ||||| |||||| ||
seq2  ATATTTAAA--TGGTCTATAAATGTCTTTACA--CTCCTG-AATGCT-AT  885

seq1  GTTCAAGTGAATCAGATTCTAAATAAATATAAAATATGAACTATAAAACA  948
      ||||||||||||  |||||||||||||||| |||| ||| ||    ||||
seq2  GTTCAAGTGAATTCGATTCTAAATAAATAT-AAATTTGACCT---TAACA  931

seq1  ATTAACAACACTTATCAATTA  969
      ||| |||||  ||||||||||
seq2  ATT-ACAACCTTTATCAATTA  951