BAC Information

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BAC

Clone NameB6Ng01-262J07
Chromosome5 (Build37)
Map Location 46,827,340 - 46,828,462
singlet/doubletsinglet
Overlap genenone
Upstream geneQdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576, EG666103
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262J07.bB6Ng01-262J07.g
ACCGA066959GA066960
length1,1221,197
definitionB6Ng01-262J07.b B6Ng01-262J07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttctaacaagcttaaacaacaattgaaaatttcccaatgata
ttgtaaggcagcttttcaaagctatattaaatagagtgatgtgctcctta
aagcagataatgaattaaaataatataaaagggaaaatatgtaaaatctg
taaataagtagaataaatccagtagttaagagtttcttagttatttctaa
atctacttttcaaactcattttacaaatcaatccatcaaggagttatttc
aggtgggtatggtggtacatatctgtaattctatctcccaagaggggaat
gcaagatcacagaagttttgagcataaccaaataataagttcaaagctag
ctgggctatgtaggaagattctgtctttttttttttaatatcaaaacaaa
cagaaagttaaaatctattgctgcattctttgaatgtggtgctagggttt
ggtcttaaacttactctggtcaataaagacaaagagggaaaagttaaagc
atttcaggtctaaatctcagttggagaatcatgttaataagtgtatttgg
cttttggctttatccaaaataagaaaccataatgccatgcatgccaaata
ccatcattatcaaggttatgtcatttcccttggctggtcaaagtacaatt
ctgactcagaaacttaggagatgtcatagtaccaccatttacttttgaaa
ttagaccactccccttttcccagctggggttcacaactatgtacctctca
gggaacttgacattacttcttttggtgtagagtacattcagggtgctgtc
acttcgctttgattacatttatcctgcagcttttgaggattcaagtttgc
cttgccctatcacacatcactgatgttatatttgatcaacagattaacac
aatgccccagcaatttcccgtggttctggtactgtctgatcagggctact
ctcagcttcaccacaaatgaatgtctaactgaaaaacatattttcagaat
agatgaaaggtacgtacttccccctgctttatacatccaggtctccctta
tagcagaggccatggcatagatgtatctacttaagatcacttatcatgca
gagtgttgccttttagccatgt

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagac
tccacttcactccaatcagaatggctaagatcaaaaactcaggtgacagc
agatgttggtgaggatgtggagaaaggggaacactcctccattgttggtg
ggatgcaagcttgtacaaccactctggaaatcagtctggctgttcctcag
aaaattggacatagtactaccggaggatcctgcaatacctctcctgggca
tatatccagaagatgtcccaaccggtaagaagaacacatgctccactatg
ttcattgcagccttgtttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
aatactactcagctattaaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgaatgaagtaacccaatcacaaag
gaactcgcacaatatgtactcattgataagtggataatagcccagaaact
taggatacccaagatataagatacaacttgccaaacacatgaaattcaag
aagaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccatagaaggagttacagagacaaaagttggagctgtgacga
aaggatggaccatctagtgactgccatatgcagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagttatagctctctcttgtgagactatgcaggggcctagcaaac
acagaagtggatgatcacagtcagctattggatgggtcacacggccccta
atggaggagctagagaaattacccaaggagctatagggaactgcacccta
ttaggtgacaacatatgactaccagtacccggagctcttgtctttagctg
catattgtatccaaagatgggctagtcgcatcactgcaagaggggcccaa
tgaactgccaactttatattgcaggggacgcacgctactggggatggtcg
tcgataggccactcgtcactgcaatcagctaccgacatgtcgacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46827340_46828462
seq2: B6Ng01-262J07.b_44_1165

seq1  GAATTCACTTCTAACAAGCTTAAACAACAATTGAAAATTTCCCAATGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTAACAAGCTTAAACAACAATTGAAAATTTCCCAATGATA  50

seq1  TTGTAAGGCAGCTTTTCAAAGCTATATTAAATAGAGTGATGTGCTCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGCAGCTTTTCAAAGCTATATTAAATAGAGTGATGTGCTCCTTA  100

seq1  AAGCAGATAATGAATTAAAATAATATAAAAGGGAAAATATGTAAAATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATAATGAATTAAAATAATATAAAAGGGAAAATATGTAAAATCTG  150

seq1  TAAATAAGTAGAATAAATCCAGTAGTTAAGAGTTTCTTAGTTATTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTAGAATAAATCCAGTAGTTAAGAGTTTCTTAGTTATTTCTAA  200

seq1  ATCTACTTTTCAAACTCATTTTACAAATCAATCCATCAAGGAGTTATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTTTCAAACTCATTTTACAAATCAATCCATCAAGGAGTTATTTC  250

seq1  AGGTGGGTATGGTGGTACATATCTGTAATTCTATCTCCCAAGAGGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTATGGTGGTACATATCTGTAATTCTATCTCCCAAGAGGGGAAT  300

seq1  GCAAGATCACAGAAGTTTTGAGCATAACCAAATAATAAGTTCAAAGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATCACAGAAGTTTTGAGCATAACCAAATAATAAGTTCAAAGCTAG  350

seq1  CTGGGCTATGTAGGAAGATTCTGTCTTTTTTTTTTTAATATCAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTATGTAGGAAGATTCTGTCTTTTTTTTTTTAATATCAAAACAAA  400

seq1  CAGAAAGTTAAAATCTATTGCTGCATTCTTTGAATGTGGTGCTAGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTTAAAATCTATTGCTGCATTCTTTGAATGTGGTGCTAGGGTTT  450

seq1  GGTCTTAAACTTACTCTGGTCAATAAAGACAAAGAGGGAAAAGTTAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAAACTTACTCTGGTCAATAAAGACAAAGAGGGAAAAGTTAAAGC  500

seq1  ATTTCAGGTCTAAATCTCAGTTGGAGAATCATGTTAATAAGTGTATTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGTCTAAATCTCAGTTGGAGAATCATGTTAATAAGTGTATTTGG  550

seq1  CTTTTGGCTTTATCCAAAATAAGAAACCATAATGCCATGCATGCCAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCTTTATCCAAAATAAGAAACCATAATGCCATGCATGCCAAATA  600

seq1  CCATCATTATCAAGGTTATGTCATTTCCCTTGGCTGGTCAAAGTACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTATCAAGGTTATGTCATTTCCCTTGGCTGGTCAAAGTACAATT  650

seq1  CTGACTCAGAAACTTAGGAGATGTCATAGTACCACCATTTACTTTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCAGAAACTTAGGAGATGTCATAGTACCACCATTTACTTTTGAAA  700

seq1  TTAGACCACTCCCCTTTTCCCAGCTGGGGTTCACAACTATGTACCTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCACTCCCCTTTTCCCAGCTGGGGTTCACAACTATGTACCTCTCA  750

seq1  GGGAACTTGACATTACTTCTTTTGGTGTAGAGTACATTCAGGGTGCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTGACATTACTTCTTTTGGTGTAGAGTACATTCAGGGTGCTGTC  800

seq1  ACTTCGCTTTGATTACATTTATCCTGCAGCTTTTGAGGATTCAAGTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGCTTTGATTACATTTATCCTGCAGCTTTTGAGGATTCAAGTTTGC  850

seq1  CTTGCCCTATCACACATCACTGATGTTATATTTGATCAACAGATTAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTATCACACATCACTGATGTTATATTTGATCAACAGATTAACAC  900

seq1  AATGCCCCAGCAATTTCCCGTGGTTCTGGTACTGTCTGATCAGGGCTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCCAGCAATTTCCCGTGGTTCTGGTACTGTCTGATCAGGGCTACT  950

seq1  CTCAGCTTCACCACAAATGAATGTCTAACTGAAAAACATATTTTCAGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTCACCACAAATGAATGTCTAACTGAAAAACATATTTTCAGAAT  1000

seq1  AGATGAAAGGTACGTACTTCCCCCCTGCTTTATACAATCCAGGTCTCCCT  1050
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AGATGAAAGGTACGTACTT-CCCCCTGCTTTATAC-ATCCAGGTCTCCCT  1048

seq1  TATAGCAGA-GCCATGGCATAGATGTATCTACTT-AGATCAC-TATCATG  1097
      ||||||||| |||||||||||||||||||||||| ||||||| |||||||
seq2  TATAGCAGAGGCCATGGCATAGATGTATCTACTTAAGATCACTTATCATG  1098

seq1  CAGGGAGTTGTGGCCTTTAGCCATGT  1123
      ||  ||||  || | |||||||||||
seq2  CA--GAGTGTTGCCTTTTAGCCATGT  1122


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