BAC Information

Click to search

BAC

Clone NameB6Ng01-262N03
Chromosome5 (Build37)
Map Location 17,761,826 - 17,897,386
singlet/doubletdoublet
Overlap geneGnai1, LOC100041818
Upstream geneLOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262N03.bB6Ng01-262N03.g
ACCGA067138GA067139
length1,089312
definitionB6Ng01-262N03.b B6Ng01-262N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,761,826 - 17,762,432)(17,897,075 - 17,897,386)
sequence
gaattcatacccaacaataggtaaccaagaaccaaagactaggtagctca
gggtcctagagtaaagccacacaccatagctttaaaaaatagtatcagta
aaaatgactcctaagaactttctgctgtactaatagatcagtgtcttgct
cagccatcattagagaagcttcctactgtagcagacaggaacaaatgcag
agacccacaattagacattatatagaaaatgaaagaccttagaacacttt
tccctaaaagagatgtctccattaaatctctctttttcattattagttac
atagatacatatgtgtgaacaaatgtataaatataacctactgtctgttt
ttgttgtttgtttatatatgatataaggaatgaacacgtggtattgaata
tccagtaaggagacttgtcctagggagaggctaattctccccttctcata
atcattaatcacatgtagcttttaatgtaggggtggaccatataaaactt
ttcttctgtgttaatatacacattaactttgccattgttccagtctttct
tatgcaaatatttctaggtgatactatttcatagaagtatcttgcactct
tcctttccttctccttcaatactcactgagtcacacctattggaatattg
atgtatctaccgtggttgggatacaaggcatcctccatcattctctatag
acacttgctcagcaacgttccttgccacccaattcataatagctaggaaa
tggaaagaacctaagtgttcttcatcaaataaatgtataataaaaatgtg
ctacatgtgcacaataagatgttcatctgtaaagaaaactgaaatttgca
gataaagggatggatgcatctaaaaaaaaagttatagttaataaattaac
ccagaccaagaaagataacaccacatgggtctctctcacctgaggctcca
atcttctggtaaagtatacacaggagtgaccagaaaatataaagggactc
tgggtgtgtagttcttgagatgggactaacaggttacaggaaatagaagt
gggaaacatagaaatgtggagacagcttcactgaaggga

caggcaaacacttatctggaaagtgtttcagtggagtggcttcctaaagc
ctttggtcttttcagggggatgtaagagaccaagtggtgtgggcacctga
ctaagctagatttgaggagatgggtaggtatgaagtgctatgctctctca
agtagtttggctttgaagggaaagaaacgcagaggcactactaaaacact
atttttggaactgaagtcactaggagtgtgtacactcgggatagaagaca
aagctgtagacacaggagacaggaagagagatgggaggagagagatgggg
aggcgagggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17761826_17762432
seq2: B6Ng01-262N03.b_536_1134

seq1  TATAAAACTTTTCTTCTGTGTTAATATACACATTAACTTTGCCATTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACTTTTCTTCTGTGTTAATATACACATTAACTTTGCCATTGTTC  50

seq1  CAGTCTTTCTTATGCAAATATTTCTAGGTGATACTATTTCATAGAAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTCTTATGCAAATATTTCTAGGTGATACTATTTCATAGAAGTAT  100

seq1  CTTGCACTCTTCCTTTCCTTCTCCTTCAATACTCACTGAGTCACACCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTCTTCCTTTCCTTCTCCTTCAATACTCACTGAGTCACACCTAT  150

seq1  TGGAATATTGATGTATCTACCGTGGTTGGGATACAAGGCATCCTCCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATTGATGTATCTACCGTGGTTGGGATACAAGGCATCCTCCATCA  200

seq1  TTCTCTATAGACACTTGCTCAGCAACGTTCCTTGCCACCCAATTCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATAGACACTTGCTCAGCAACGTTCCTTGCCACCCAATTCATAAT  250

seq1  AGCTAGGAAATGGAAAGAACCTAAGTGTTCTTCATCAAATAAATGTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGAAATGGAAAGAACCTAAGTGTTCTTCATCAAATAAATGTATAA  300

seq1  TAAAAATGTGCTACATGTGCACAATAAGATGTTCATCTGTAAAGAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTGCTACATGTGCACAATAAGATGTTCATCTGTAAAGAAAACT  350

seq1  GAAATTTGCAGATAAAGGGATGGATGCATCTAAAAAAAAAGTTATAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGCAGATAAAGGGATGGATGCATCTAAAAAAAAAGTTATAGTTA  400

seq1  ATAAATTAACCCAGACCAAGAAAGATAAACACCACAT-GGTCTCTCTCAC  449
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  ATAAATTAACCCAGACCAAGAAAGAT-AACACCACATGGGTCTCTCTCAC  449

seq1  CTGAGGCTCCAAATCTTCTGGTAAAAGTATACAACAGGGAGTGACCAGAA  499
      |||||||||| ||||||||||| ||||||||| ||| |||||||||||||
seq2  CTGAGGCTCC-AATCTTCTGGT-AAAGTATAC-ACA-GGAGTGACCAGAA  495

seq1  AATATAAAGGGACTCTGGGTGTGTAGGTTCTTGAGATGGGACTAACAGGG  549
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  AATATAAAGGGACTCTGGGTGTGTA-GTTCTTGAGATGGGACTAACAGGT  544

seq1  TACAGGAAATAAGAAGTGGGAAACATAGAAATGTGGAGACAGGCTTCAAC  599
      |||||||||| |||||||||||||||||||||||||||||| ||||| ||
seq2  TACAGGAAAT-AGAAGTGGGAAACATAGAAATGTGGAGACA-GCTTC-AC  591

seq1  TGAAGGGA  607
      ||||||||
seq2  TGAAGGGA  599


seq1: chr5_17897075_17897386
seq2: B6Ng01-262N03.g_72_383 (reverse)

seq1  CATCCCTCGCCTCCCCATCTCTCTCCTCCCATCTCTCTTCCTGTCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCGCCTCCCCATCTCTCTCCTCCCATCTCTCTTCCTGTCTCCTG  50

seq1  TGTCTACAGCTTTGTCTTCTATCCCGAGTGTACACACTCCTAGTGACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACAGCTTTGTCTTCTATCCCGAGTGTACACACTCCTAGTGACTTC  100

seq1  AGTTCCAAAAATAGTGTTTTAGTAGTGCCTCTGCGTTTCTTTCCCTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAAAATAGTGTTTTAGTAGTGCCTCTGCGTTTCTTTCCCTTCAA  150

seq1  AGCCAAACTACTTGAGAGAGCATAGCACTTCATACCTACCCATCTCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACTACTTGAGAGAGCATAGCACTTCATACCTACCCATCTCCTCA  200

seq1  AATCTAGCTTAGTCAGGTGCCCACACCACTTGGTCTCTTACATCCCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGCTTAGTCAGGTGCCCACACCACTTGGTCTCTTACATCCCCCTG  250

seq1  AAAAGACCAAAGGCTTTAGGAAGCCACTCCACTGAAACACTTTCCAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCAAAGGCTTTAGGAAGCCACTCCACTGAAACACTTTCCAGATA  300

seq1  AGTGTTTGCCTG  312
      ||||||||||||
seq2  AGTGTTTGCCTG  312


| Home | SequenceCutter | Blast | Download |