BAC Information

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BAC

Clone NameB6Ng01-263A02
Chromosome5 (Build37)
Map Location 31,262,024 - 31,407,699
singlet/doubletdoublet
Overlap genePreb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1
Downstream geneDnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263A02.bB6Ng01-263A02.g
ACCGA067280GA067281
length1,0551,095
definitionB6Ng01-263A02.b B6Ng01-263A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,406,644 - 31,407,699)(31,262,024 - 31,263,108)
sequence
gaattcatgatttgttgaatgagctaaagctaaaggatctttgtcccgat
agaatgtaagcctggaggttgttcctcccgatagaatgtaagcctggagg
ttggccagcaaaaactgcctgtgctagaagctggggaagtggacaagatg
acagagcatctttgcccataccgttctagaggtgacaacctgggggtggg
gcgcatgacagataacatgtcacatgttcctgagctccttagttcctagt
attcctccagctcttcatacagttactgggatactgaaggtgatcaatga
atgccattggctgaaggaaagagcacctttacccaaccatttctgagctc
cgagacacggatacactcgtacagacagcatgactgcaaccctgctgtac
caagacgggccctggcagagaatcagtaaacatccttcaagtcttgccag
aagctgcagaatgcgatttctttttgtgcacaccctctggcatcctaatc
catcccagtctgtggccctcgaaagagccttcagttcttgtgatgccctg
ctccgaataaaaagatacggcagcctggcagccgccaagtgttgggacac
agcaggcaagagggcctggcgtgctgtgtgacccgaggcttctacgcact
gctttccagacagcacagcgcttttgatgggttctcaggagcctgcaagt
caggtgctagatccctcttctggctctggttctaactagccatgtgatcc
ctgcacctctgaaccttctcttcttctatgagatcacttgctactcccac
ctgatcccaaaacttagatttgcttgcaaaaataaaaggaagagaaacaa
caaaataaacttgtcagcagatgaccacaggttccgttttccagagttct
ttgtcttcctgtcacacaccttgagtcagtgagcttccccgacagcctac
tcagcagccatttggtcctgtttgaagaaacagtgagcatcccttgtttt
atcacaaacaaaaaaacactgtagtcaacatagctagatacccacatata
caaga
gaattccgtctccagctgcttgaagatggacaagacaatgtgccttcctg
gaaaaggccagcgtatgagccctggaccagctctcgtaatccggcgtgga
cagtcctggattcgcagacctgcacagctttcagtctaattttggctgtc
tcaaccactctgctcaggtgaaaccagcacccgaacggcaatcctgggtg
ctcccgctagaaatgggtagggactaaatcaggggtactgctcacctctg
catcccccggccaccctggaatctccctgggccacggtataacctgttct
cagtggccctgcgttctcaccacgccattctttatgccggtcttggcagc
tcctcctccgcccgcagcgatgagcagcccagtcttggggtctatccgaa
gcgcgtacaacgggaacggggcccggtacagctccacaccccggcgccga
cccatcccgcccgcacgttcaccgccaaccccgcggaacccacgacatgc
cgcgcctcgcctccgaaagctcaggaacttggcgctagagttttccggaa
gactgccgacccctctcagcactggacttgccaccactcaaaccaccgca
agcagccgatctgcgcccgcgcggccgactgggtcttgcaggcgttcagt
gcgcacgcgccgagctcctgggctctctctgcgcaagcgcaagacgccaa
tccgcgtcagcactagcgggacgcgctgtcacggaaccctggcgtcggat
ccgggtcctagccccgaatgacgatgaagctgccatctttgtgtggggcg
tgggaggtggggctagaagaggattactgaagatcagtaaatcgaattaa
aaagttctcggactggaacagtcccccaccttcaggagagatacacagca
gactccgtacaagccgggccctttgtgtgttactccagggagaaatgggt
tcttcccgggttgtgtggaggacagaccctccaaacacaatccacctgct
tcctaatttcctaaatatgaagaaatcagtccccaccttgagaagcatct
cgcgagttgaattggcactttttcttatggcttgacaatccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31406644_31407699
seq2: B6Ng01-263A02.b_47_1101 (reverse)

seq1  TCTTGTATATGTGTGTATTCTAGCTATG-TGACTACAGTGTTTTTTTGTT  49
      ||||||||||||| ||| |||||||||| |||||||||||||||||||||
seq2  TCTTGTATATGTGGGTA-TCTAGCTATGTTGACTACAGTGTTTTTTTGTT  49

seq1  TGTGGATAAACAAGGGATGCTTCACTGTTTCTTCAAACAGGACCAAATGG  99
      ||||   ||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTGATAAAACAAGGGATGC-TCACTGTTTCTTCAAACAGGACCAAATGG  98

seq1  CTGCTGAGTAGGCTGTCGGGGAAGCTCACTGACTCAAGGTGTGTGACAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGTAGGCTGTCGGGGAAGCTCACTGACTCAAGGTGTGTGACAGG  148

seq1  AAGACAAAGAACTCTGGAAAACGGAACCTGTGGTCATCTGCTGACAAGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGAACTCTGGAAAACGGAACCTGTGGTCATCTGCTGACAAGTT  198

seq1  TATTTTGTTGTTTCTCTTCCTTTTATTTTTGCAAGCAAATCTAAGTTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTGTTTCTCTTCCTTTTATTTTTGCAAGCAAATCTAAGTTTTG  248

seq1  GGATCAGGTGGGAGTAGCAAGTGATCTCATAGAAGAAGAGAAGGTTCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGGTGGGAGTAGCAAGTGATCTCATAGAAGAAGAGAAGGTTCAGA  298

seq1  GGTGCAGGGATCACATGGCTAGTTAGAACCAGAGCCAGAAGAGGGATCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGGATCACATGGCTAGTTAGAACCAGAGCCAGAAGAGGGATCTA  348

seq1  GCACCTGACTTGCAGGCTCCTGAGAACCCATCAAAAGCGCTGTGCTGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGACTTGCAGGCTCCTGAGAACCCATCAAAAGCGCTGTGCTGTCT  398

seq1  GGAAAGCAGTGCGTAGAAGCCTCGGGTCACACAGCACGCCAGGCCCTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAGTGCGTAGAAGCCTCGGGTCACACAGCACGCCAGGCCCTCTT  448

seq1  GCCTGCTGTGTCCCAACACTTGGCGGCTGCCAGGCTGCCGTATCTTTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGTGTCCCAACACTTGGCGGCTGCCAGGCTGCCGTATCTTTTTA  498

seq1  TTCGGAGCAGGGCATCACAAGAACTGAAGGCTCTTTCGAGGGCCACAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAGCAGGGCATCACAAGAACTGAAGGCTCTTTCGAGGGCCACAGAC  548

seq1  TGGGATGGATTAGGATGCCAGAGGGTGTGCACAAAAAGAAATCGCATTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGATTAGGATGCCAGAGGGTGTGCACAAAAAGAAATCGCATTCT  598

seq1  GCAGCTTCTGGCAAGACTTGAAGGATGTTTACTGATTCTCTGCCAGGGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCTGGCAAGACTTGAAGGATGTTTACTGATTCTCTGCCAGGGCC  648

seq1  CGTCTTGGTACAGCAGGGTTGCAGTCATGCTGTCTGTACGAGTGTATCCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTGGTACAGCAGGGTTGCAGTCATGCTGTCTGTACGAGTGTATCCG  698

seq1  TGTCTCGGAGCTCAGAAATGGTTGGGTAAAGGTGCTCTTTCCTTCAGCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGGAGCTCAGAAATGGTTGGGTAAAGGTGCTCTTTCCTTCAGCCA  748

seq1  ATGGCATTCATTGATCACCTTCAGTATCCCAGTAACTGTATGAAGAGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTCATTGATCACCTTCAGTATCCCAGTAACTGTATGAAGAGCTG  798

seq1  GAGGAATACTAGGAACTAAGGAGCTCAGGAACATGTGACATGTTATCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATACTAGGAACTAAGGAGCTCAGGAACATGTGACATGTTATCTGT  848

seq1  CATGCGCCCCACCCCCAGGTTGTCACCTCTAGAACGGTATGGGCAAAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGCCCCACCCCCAGGTTGTCACCTCTAGAACGGTATGGGCAAAGAT  898

seq1  GCTCTGTCATCTTGTCCACTTCCCCAGCTTCTAGCACAGGCAGTTTTTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCATCTTGTCCACTTCCCCAGCTTCTAGCACAGGCAGTTTTTGC  948

seq1  TGGCCAACCTCCAGGCTTACATTCTATCGGGAGGAACAACCTCCAGGCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACCTCCAGGCTTACATTCTATCGGGAGGAACAACCTCCAGGCTT  998

seq1  ACATTCTATCGGGACAAAGATCCTTTAGCTTTAGCTCATTCAACAAATCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTATCGGGACAAAGATCCTTTAGCTTTAGCTCATTCAACAAATCA  1048

seq1  TGAATTC  1056
      |||||||
seq2  TGAATTC  1055

seq1: chr5_31262024_31263108
seq2: B6Ng01-263A02.g_73_1167

seq1  GAATTCCGTCTCCAGCTGCTTGAAGATGGACAAGACAATGTGCCTTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTCTCCAGCTGCTTGAAGATGGACAAGACAATGTGCCTTCCTG  50

seq1  GAAAAGGCCAGCGTATGAGCCCTGGACCAGCTCTCGTAATCCGGCGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGCCAGCGTATGAGCCCTGGACCAGCTCTCGTAATCCGGCGTGGA  100

seq1  CAGTCCTGGATTCGCAGACCTGCACAGCTTTCAGTCTAATTTTGGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGGATTCGCAGACCTGCACAGCTTTCAGTCTAATTTTGGCTGTC  150

seq1  TCAACCACTCTGCTCAGGTGAAACCAGCACCCGAACGGCAATCCTGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCACTCTGCTCAGGTGAAACCAGCACCCGAACGGCAATCCTGGGTG  200

seq1  CTCCCGCTAGAAATGGGTAGGGACTAAATCAGGGGTACTGCTCACCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGCTAGAAATGGGTAGGGACTAAATCAGGGGTACTGCTCACCTCTG  250

seq1  CATCCCCCGGCCACCCTGGAATCTCCCTGGGCCACGGTATAACCTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCGGCCACCCTGGAATCTCCCTGGGCCACGGTATAACCTGTTCT  300

seq1  CAGTGGCCCTGCGTTCTCACCACGCCATTCTTTATGCCGGTCTTGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCCTGCGTTCTCACCACGCCATTCTTTATGCCGGTCTTGGCAGC  350

seq1  TCCTCCTCCGCCCGCAGCGATGAGCAGCCCAGTCTTGGGGTCTATCCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCGCCCGCAGCGATGAGCAGCCCAGTCTTGGGGTCTATCCGAA  400

seq1  GCGCGTACAACGGGAACGGGGCCCGGTACAGCTCCACACCCCGGCGCCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGTACAACGGGAACGGGGCCCGGTACAGCTCCACACCCCGGCGCCGA  450

seq1  CCCATCCCGCCCGCACGTTCACCGCCAACCCCGCGGAACCCACGACATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCGCCCGCACGTTCACCGCCAACCCCGCGGAACCCACGACATGC  500

seq1  CGCGCCTCGCCTCCGAAAGCTCAGGAACTTGGCGCTAGAGTTTTCCGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCCTCGCCTCCGAAAGCTCAGGAACTTGGCGCTAGAGTTTTCCGGAA  550

seq1  GACTGCCGACCCCTCTCAGCACTGGACTTGCCACCACTCAAACCACCGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCGACCCCTCTCAGCACTGGACTTGCCACCACTCAAACCACCGCA  600

seq1  AGCAGCCGATCTGCGCCCGCGCGGCCGACTGGGTCTTGCAGGCGTTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCGATCTGCGCCCGCGCGGCCGACTGGGTCTTGCAGGCGTTCAGT  650

seq1  GCGCACGCGCCGAGCTCCTGGGCTCTCTCTGCGCAAGCGCAAGACGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACGCGCCGAGCTCCTGGGCTCTCTCTGCGCAAGCGCAAGACGCCAA  700

seq1  TCCGCGTCAGCACTAGCGGGACGCGCTGTCACGGAACCCTGGCGTCGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCGTCAGCACTAGCGGGACGCGCTGTCACGGAACCCTGGCGTCGGAT  750

seq1  CCGGGTCCTAGCCCCGAATGACGATGAAGCTGCCATCTTTGTGTGGGGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTCCTAGCCCCGAATGACGATGAAGCTGCCATCTTTGTGTGGGGCG  800

seq1  TGGGAGGTGGGGCTAGAAGA-GATTACTGAAGATCAGTAAATCGAATTAA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGGAGGTGGGGCTAGAAGAGGATTACTGAAGATCAGTAAATCGAATTAA  850

seq1  AAAGTTCTCGGACTGGGACAGTCCCC--ACTTCAGGAGAGATACACAGCA  897
      |||||||||||||||| |||||||||   |||||||||||||||||||||
seq2  AAAGTTCTCGGACTGGAACAGTCCCCCACCTTCAGGAGAGATACACAGCA  900

seq1  GACT-CGTACAAGCCGGG-CCTTTGTGTGTTACTCCAGGGAGGAAATGGG  945
      |||| ||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GACTCCGTACAAGCCGGGCCCTTTGTGTGTTACTCCAGGGA-GAAATGGG  949

seq1  TTC-TCCCGGGTTGTGTGGAGGACAGACACTCCAAA-ACAGATTCA-CTG  992
      ||| |||||||||||||||||||||||| ||||||| ||| || || |||
seq2  TTCTTCCCGGGTTGTGTGGAGGACAGACCCTCCAAACACA-ATCCACCTG  998

seq1  CTTCCTAATATCCT-AATATGAAGAAATCAGTCCCCACTTTGAG-AGCAT  1040
      ||||||||| |||| ||||||||||||||||||||||| ||||| |||||
seq2  CTTCCTAATTTCCTAAATATGAAGAAATCAGTCCCCACCTTGAGAAGCAT  1048

seq1  CCTCCGCG-GTTG-ATTGG-ACTCTTTCTTATGGCTTGAC-ATCCACTT  1085
      |   |||| |||| ||||| ||| |||||||||||||||| ||||||||
seq2  C--TCGCGAGTTGAATTGGCACTTTTTCTTATGGCTTGACAATCCACTT  1095