BAC Information

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BAC

Clone NameB6Ng01-263B01
Chromosome5 (Build37)
Map Location 79,725,271 - 79,853,063
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263B01.bB6Ng01-263B01.g
ACCGA067326GA067327
length1,1581,125
definitionB6Ng01-263B01.b B6Ng01-263B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,725,271 - 79,726,458)(79,851,933 - 79,853,063)
sequence
gaattcaatctaaagttgtgtaccttcctaagtcaggaaatcatcgtaca
gttttcccaaggcctttgtggaatagtcaggatgagtggttatcagtaca
tggatagtgctgttgttaccaagagacagtctcaaacccatcaactaggg
aagtaaatttcacttttttgcatcactttttgatttttttttacaggaac
gttagcttgataagaatcatctataataaagacttgaataatacatcatt
ggtattaattagtgatttttatggaagttaatatttgttcgagagtgctt
aatactcatgtagggctccgggtcctattcttgttttgcttgagcaaaac
attaaaatcaaaaccataaaaatggttgtgttgctttccatgcaaatcac
caggtatctcagattccagctggcatctcctggaaaccaagaaacatttt
atactttagctatcattttcatgtccatctgcccattcccactcaaacaa
aacgtgtgggatgtttgtttttatctgctggaatcacaccagatagaaga
tgtccaagagagtatggactcttcacattctattgaacattatcatttcc
cctctttcttatttggcttaattttcattttcttcagataatccctcata
cattcatcttgggtgagggatttctttcctattgcacttaaaacgatttt
atctcatcatatcctttcatcagttttccattattatacctttcttccca
taaagtagtaggctacatggtttacctgtgatatctccctttctagaact
taaacatcataaaattgtggattgtttttttttatccccatgtattgttt
gcttataaacttaaagttataaatgactatcatcataagtgatcatttaa
taactgttattacagaagatatacatctcaaaggagtaaatactcatact
aggaagggacttagttgtgtggctgctattgtatatctaagtatatatca
catgcagttgcattataaaaaatactaaatttattaaattattacttact
attagataaatatcaattaattataatttatttcaatggggtgatgtcaa
ttataataattctcttaggtagttcaagtcttttatcaggccttgaaact
tcacgaac

gaattcttcctgaatcattttcttatttctaaataaaaggaagaaaaaag
tacacatgcatagaaataaagcttcttttgatccttctttttctccttta
aatacatatagaaaaatgcatctttttacactgtctccttatataaatat
cttcctaggtagttatgccttaaaaaagaatcttttaaaaatacacttta
cattccactttaaaacccagtcaactcagaaaatattcctagtattaaaa
gctacaattctttctgttatcagtaaatcccttatatttttcaatgtatt
acaataatctcctttcttcctcagactgtctatagaagaacatcttttac
attcaaggatatatcttaaatcagttctagccatgaaccagtttgctaag
gatttatctgaagctgccacattttaataaaaattggactaatgaatttt
tggctatgtagaaacagaaaacaacaaaatagtgtagactgattttaaat
taacattgatttgtcaaaataacctcattgtagtagaattcactgatgtc
ttttaaatatgaaatataagcaaatgcatatatagattcaaatggttttg
cttcagagaaatgacaattctataaaatcatagacacttaaaatacaata
gcctctctacaacacatatattttgccttaggagtaagcacagagccctc
tgtatcctatacccaagacttgggattgttagaatcaaagtgtcagctgg
gatttgactcataagattaaaagcagaataaaattctctgcagacatact
taagaataggtgtctcttttctagaccaacaaaatggctttgcaacagct
ttttcataatgggtttaaccatgtcagacaagcacagcattctctcaatt
ttgactaaaaaagcagaaatgtatcaagagattaaatctacaaatatgtc
atagaatgcatttaatcatgagatgcagtccttcatatttactatgcaat
ctacactccacttgaaaagatgctaccaaaatgactctacaaggtccaaa
aaggaacagcaagtttgagaatatatcatatttttttttcagaagctgta
cataatttatacatagttcacactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79725271_79726458
seq2: B6Ng01-263B01.b_44_1201

seq1  GAATTCAATCTAAAGTTGTGTACCTTCCTAAGTCAGGAAATCATCGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTAAAGTTGTGTACCTTCCTAAGTCAGGAAATCATCGTACA  50

seq1  GTTTTCCCAAGGCCTTTGTGGAATAGTCAGGATGAGTGGTTATCAGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCAAGGCCTTTGTGGAATAGTCAGGATGAGTGGTTATCAGTACA  100

seq1  TGGATAGTGCTGTTGTTACCAAGAGACAGTCTCAAACCCATCAACTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGTGCTGTTGTTACCAAGAGACAGTCTCAAACCCATCAACTAGGG  150

seq1  AAGTAAATTTCACTTTTTTGCATCACTTTTTGATTTTTTTTTACAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATTTCACTTTTTTGCATCACTTTTTGATTTTTTTTTACAGGAAC  200

seq1  GTTAGCTTGATAAGAATCATCTATAATAAAGACTTGAATAATACATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTGATAAGAATCATCTATAATAAAGACTTGAATAATACATCATT  250

seq1  GGTATTAATTAGTGATTTTTATGGAAGTTAATATTTGTTCGAGAGTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAATTAGTGATTTTTATGGAAGTTAATATTTGTTCGAGAGTGCTT  300

seq1  AATACTCATGTAGGGCTCCGGGTCCTATTCTTGTTTTGCTTGAGCAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCATGTAGGGCTCCGGGTCCTATTCTTGTTTTGCTTGAGCAAAAC  350

seq1  ATTAAAATCAAAACCATAAAAATGGTTGTGTTGCTTTCCATGCAAATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATCAAAACCATAAAAATGGTTGTGTTGCTTTCCATGCAAATCAC  400

seq1  CAGGTATCTCAGATTCCAGCTGGCATCTCCTGGAAACCAAGAAACATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCTCAGATTCCAGCTGGCATCTCCTGGAAACCAAGAAACATTTT  450

seq1  ATACTTTAGCTATCATTTTCATGTCCATCTGCCCATTCCCACTCAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAGCTATCATTTTCATGTCCATCTGCCCATTCCCACTCAAACAA  500

seq1  AACGTGTGGGATGTTTGTTTTTATCTGCTGGAATCACACCAGATAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTGGGATGTTTGTTTTTATCTGCTGGAATCACACCAGATAGAAGA  550

seq1  TGTCCAAGAGAGTATGGACTCTTCACATTCTATTGAACATTATCATTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGAGAGTATGGACTCTTCACATTCTATTGAACATTATCATTTCC  600

seq1  CCTCTTTCTTATTTGGCTTAATTTTCATTTTCTTCAGATAATCCCTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCTTATTTGGCTTAATTTTCATTTTCTTCAGATAATCCCTCATA  650

seq1  CATTCATCTTGGGTGAGGGATTTCTTTCCTATTGCACTTAAAACGATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATCTTGGGTGAGGGATTTCTTTCCTATTGCACTTAAAACGATTTT  700

seq1  ATCTCATCATATCCTTTCATCAGTTTTCCATTATTATACCTTTCTTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCATATCCTTTCATCAGTTTTCCATTATTATACCTTTCTTCCCA  750

seq1  TAAAGTAGTAGGCTACATGGTTTACCTGTGATATCTCCCTTTCTAGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGTAGGCTACATGGTTTACCTGTGATATCTCCCTTTCTAGAACT  800

seq1  TAAACATCATAAAATTGTGGATTG-TTTTTTTTATCCCCATGTATTGTTT  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAAACATCATAAAATTGTGGATTGTTTTTTTTTATCCCCATGTATTGTTT  850

seq1  GCTTATAAACTTAAAGTTATAAATGACTATCATCATAAGTGATCATTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAAACTTAAAGTTATAAATGACTATCATCATAAGTGATCATTTAA  900

seq1  TAACTGTTATTACAGAAGATATACATCTCAAAGGAGTAAATACTCATACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTATTACAGAAGATATACATCTCAAAGGAGTAAATACTCATACT  950

seq1  AGGAAGGGACTTAGTTGTGTGGCTGCTATTGTAATATCTAAAGTATATTA  999
      |||||||||||||||||||||||||||||||| |||||| ||||||| ||
seq2  AGGAAGGGACTTAGTTGTGTGGCTGCTATTGT-ATATCT-AAGTATA-TA  997

seq1  TCACATGCAGTTGCCATTTATAAAAAAATACTAAATTTTAATTTTAAAAA  1049
      ||||||||||||||   |||| ||||||||||||||||  |||    |||
seq2  TCACATGCAGTTGC--ATTAT-AAAAAATACTAAATTT--ATT----AAA  1038

seq1  TTATTACTTACTATTTAAGGAATTAAATTATCAAATTTAATTTAATAAAA  1099
      |||||||||||||||     |  |||| ||||||  ||||||  ||||  
seq2  TTATTACTTACTATT-----AGATAAA-TATCAA--TTAATT--ATAA--  1076

seq1  TTTTATTTCAAT-GGGTGATGTCAAAATTATAATTATTCTCTAAAGTAGT  1148
       ||||||||||| ||||||||||  ||||||||| ||||||| | |||||
seq2  -TTTATTTCAATGGGGTGATGTC--AATTATAATAATTCTCTTAGGTAGT  1123

seq1  TCAAAGTTCTTTTTTATCAGGGCCTGAAAATTTCACGAAC  1188
      ||||     | |||||||| |||||  ||| |||||||||
seq2  TCAA----GTCTTTTATCA-GGCCTTGAAACTTCACGAAC  1158


seq1: chr5_79851933_79853063
seq2: B6Ng01-263B01.g_64_1188 (reverse)

seq1  AAGTGTG-ACTATGTATATAATTATGTTACAGC-TCTGAAAAAAATATTG  48
      ||||||| |||||||||| ||||||| |||||| ||||||||||| ||  
seq2  AAGTGTGAACTATGTATA-AATTATG-TACAGCTTCTGAAAAAAAAATAT  48

seq1  GATATA-TCTCAAACTTTGCTGTT-CTTTTTGGACCTTTGTTAGAGGTCA  96
      |||||| |||||||| |||||||| |||||||||||||   |||| ||||
seq2  GATATATTCTCAAAC-TTGCTGTTCCTTTTTGGACCTT--GTAGA-GTCA  94

seq1  TTTTGGTAGCATCTTTTCAAGTGGAGTGTAGATTTGCATAGTAAATATGA  146
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTGGTAGCATCTTTTCAAGTGGAGTGTAGA-TTGCATAGTAAATATGA  143

seq1  AGGACTGCATTCTCATGATTAAATGCATTCTATGACATATTTTGTAGATT  196
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  AGGACTGCA-TCTCATGATTAAATGCATTCTATGACATA-TTTGTAGATT  191

seq1  TAAATCTCTTGATACATTTCTGCTTTTTTAGTCAAAATTGAGAGAATGCT  246
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AATCTCTTGATACATTTCTGCTTTTTTAGTCAAAATTGAGAGAATGCT  240

seq1  GTGCTTGTCTGACATGGTTAAACCCATTATGAAAAAGCTGTTGCAAAGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTCTGACATGGTTAAACCCATTATGAAAAAGCTGTTGCAAAGCC  290

seq1  ATTTTGTTGGTCTAGAAAAGAGACACCTATTCTTAAGTATGTCTGCAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGGTCTAGAAAAGAGACACCTATTCTTAAGTATGTCTGCAGAG  340

seq1  AATTTTATTCTGCTTTTAATCTTATGAGTCAAATCCCAGCTGACACTTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTCTGCTTTTAATCTTATGAGTCAAATCCCAGCTGACACTTTG  390

seq1  ATTCTAACAATCCCAAGTCTTGGGTATAGGATACAGAGGGCTCTGTGCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACAATCCCAAGTCTTGGGTATAGGATACAGAGGGCTCTGTGCTT  440

seq1  ACTCCTAAGGCAAAATATATGTGTTGTAGAGAGGCTATTGTATTTTAAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAAGGCAAAATATATGTGTTGTAGAGAGGCTATTGTATTTTAAGT  490

seq1  GTCTATGATTTTATAGAATTGTCATTTCTCTGAAGCAAAACCATTTGAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGATTTTATAGAATTGTCATTTCTCTGAAGCAAAACCATTTGAAT  540

seq1  CTATATATGCATTTGCTTATATTTCATATTTAAAAGACATCAGTGAATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATGCATTTGCTTATATTTCATATTTAAAAGACATCAGTGAATTC  590

seq1  TACTACAATGAGGTTATTTTGACAAATCAATGTTAATTTAAAATCAGTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAATGAGGTTATTTTGACAAATCAATGTTAATTTAAAATCAGTCT  640

seq1  ACACTATTTTGTTGTTTTCTGTTTCTACATAGCCAAAAATTCATTAGTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTTTGTTGTTTTCTGTTTCTACATAGCCAAAAATTCATTAGTCC  690

seq1  AATTTTTATTAAAATGTGGCAGCTTCAGATAAATCCTTAGCAAACTGGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTAAAATGTGGCAGCTTCAGATAAATCCTTAGCAAACTGGTT  740

seq1  CATGGCTAGAACTGATTTAAGATATATCCTTGAATGTAAAAGATGTTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTAGAACTGATTTAAGATATATCCTTGAATGTAAAAGATGTTCTT  790

seq1  CTATAGACAGTCTGAGGAAGAAAGGAGATTATTGTAATACATTGAAAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACAGTCTGAGGAAGAAAGGAGATTATTGTAATACATTGAAAAAT  840

seq1  ATAAGGGATTTACTGATAACAGAAAGAATTGTAGCTTTTAATACTAGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGATTTACTGATAACAGAAAGAATTGTAGCTTTTAATACTAGGAA  890

seq1  TATTTTCTGAGTTGACTGGGTTTTAAAGTGGAATGTAAAGTGTATTTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGAGTTGACTGGGTTTTAAAGTGGAATGTAAAGTGTATTTTTA  940

seq1  AAAGATTCTTTTTTAAGGCATAACTACCTAGGAAGATATTTATATAAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTTTTTTAAGGCATAACTACCTAGGAAGATATTTATATAAGGA  990

seq1  GACAGTGTAAAAAGATGCATTTTTCTATATGTATTTAAAGGAGAAAAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTAAAAAGATGCATTTTTCTATATGTATTTAAAGGAGAAAAAGA  1040

seq1  AGGATCAAAAGAAGCTTTATTTCTATGCATGTGTACTTTTTTCTTCCTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAAGAAGCTTTATTTCTATGCATGTGTACTTTTTTCTTCCTTT  1090

seq1  TATTTAGAAATAAGAAAATGATTCAGGAAGAATTC  1131
      |||||||||||||||||||||||||||||||||||
seq2  TATTTAGAAATAAGAAAATGATTCAGGAAGAATTC  1125


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