BAC Information

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BAC

Clone NameB6Ng01-263E03
Chromosome5 (Build37)
Map Location 15,112,624 - 15,141,213
singlet/doubletdoublet
Overlap geneSpeer4d
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263E03.bB6Ng01-263E03.g
ACCGA067472GA067473
length7281,019
definitionB6Ng01-263E03.b B6Ng01-263E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,112,624 - 15,113,392)(15,140,192 - 15,141,213)
sequence
gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgc
aagaaacatatcgtgcaaatgaaacggaagcagcattgaaagtctgagta
gccggtgggcatccctgaacatgtgcctgtgggtagctgacagatcacct
gttttaaaagcaaggctggtggtctagtcaatcatggtcgctgttctggt
tctaaaccagattctggagaaagctctattgttgttaatacttgagagga
gcttggtggctgattatgggatggatccccgggtggggtagtctctggat
ggtccatcctttcctcttaactttgtctccataactccttccatgggaat
tttgttccctattctgatactactgcatatgccagcaagattttgctgaa
aggacctagatatagctgtcttgtgaggctatgccagtacctggcaaaca
gaagtggatgctcacagtcatttataggatggagcacagggcctccaatg
gagaagctagagaaagcacccaaggagctgaagggatctgcaaccctaaa
ggtggaacaacaatatgaactaaccagtacccccagagcttgtgtctcta
gctgcatatgtagcagaagatggcctcgtcagccatcattggaaagagag
gcccctaggtcttgcaaactttatatgctgcacgcagtacagggccaaga
aatgggagtgggtgggtgggggagcagg
gaattctgcactaaacccatctgttcctgggatttgtttgtttgggagac
tattaatgactgcttctaattctttaagggttatgggacagccttagctc
aggggcatagatagagacccaaccttaccagttctcctgtctagtggcac
agtccactttgccccacaatgaaatgtggatgttgtagattaaagaatat
attgaaatatgagcagtaaaatgaaaatcattcattgagagaaaaaaaaa
ttgtcttcaagtggtcattcttaatccaacctttttacaaaaccttaata
aatattcttacaaaataagcatgaaattaattgtaaaagaagaaagaaat
gtttctggcctcttgccataattgattttcaaattttttcttattaattt
taattagacattcagagaaagtagacttgagaaacagtttctagttgata
tgtaaatggtacttaacaggtcacagagatggctgaaggagcaaggacct
agaggatattcaaagaatggttcattattggccaagttgtgcttaacact
ctcataagtaacttctctcacctctaatcatgtaactatggttctatact
atatgtaatccatatctgtttctttttatcaatatcctttaagactaccc
agcactatatattttcaatgtaataattgagcaatatgctcaagtgtctt
gttgcattacgtgtaaaaatttgcaataatctttgagaataagaaaaatt
ttattttttcccagatatatgtcttagttagggttttgctgctgtaaaca
gacactatgaccatggcaactcttaaaaggagaccatttaattgggcctg
tcctacaggttcagaggttcagtccattatcatcaaggcaggagcatggc
agtgccagagcaggcatggttcagaggagctgagagttctacatcttcat
ctgaaggccagttggagaagactggcttccaggaagctaggaggggaggt
ctcaagcatgacagacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15112624_15113392
seq2: B6Ng01-263E03.b_1_771

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTCC  50
                                                 |||||||
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTCC  50

seq1  TCTTCTCAGGTACAACTGGGTCTTTGTCAAGTTGATAAAATGCAAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCAGGTACAACTGGGTCTTTGTCAAGTTGATAAAATGCAAGAAAC  100

seq1  ATATCGTGCAAATGAAACGGAAGCAGCATTGAAAGTCTGAGTAGCCGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTGCAAATGAAACGGAAGCAGCATTGAAAGTCTGAGTAGCCGGTG  150

seq1  GGCATCCCTGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTGGTTTAA  200
      |||||||||| ||||||||||||||||||||||||||||| ||| |||||
seq2  GGCATCCCTGAACATGTGCCTGTGGGTAGCTGACAGATCACCTGTTTTAA  200

seq1  AAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTAGTGCTAAAC  250
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  AAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTGGTTCTAAAC  250

seq1  CAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAGCTTGGT  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGATTCTGGAGAAAGCTCTATTGTTGTTAATACTTGAGAGGAGCTTGGT  300

seq1  GGCTGATTATGGGATGGATCATCGGGTGGGGTAGTCTCTGGATGGTCCAT  350
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GGCTGATTATGGGATGGATCCCCGGGTGGGGTAGTCTCTGGATGGTCCAT  350

seq1  CCTTTCTTCTTAGCTTTGTCTCCGTAACTCCTTCCATGGCTTTTTTGTTC  400
      |||||| ||||| |||||||||| |||||||||||||||   ||||||||
seq2  CCTTTCCTCTTAACTTTGTCTCCATAACTCCTTCCATGGGAATTTTGTTC  400

seq1  CCTATTCTGACACTACTGCATATGCCAGCAAGATTTTGCTGAAAGGACCT  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTGATACTACTGCATATGCCAGCAAGATTTTGCTGAAAGGACCT  450

seq1  TGATATAGCTGTCTTGTGAGGCTATGCCAGTGCCTGGCAAACACAGAAGT  500
       |||||||||||||||||||||||||||||| ||||||||  ||||||||
seq2  AGATATAGCTGTCTTGTGAGGCTATGCCAGTACCTGGCAA--ACAGAAGT  498

seq1  GGATGCTCACAGTCATCTATAGGATGGAGCACAGGGCCTCCAATGGAGAA  550
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGATGCTCACAGTCATTTATAGGATGGAGCACAGGGCCTCCAATGGAGAA  548

seq1  GCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTATAAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  GCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTAAAGGTGG  598

seq1  AACAACAATATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCTAGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCTAGCTGC  648

seq1  ATATGTAGCAGAAGATGGCCTAGTCAGCCAGCATTGGGAAGAGAGGCCCC  700
      ||||||||||||||||||||| |||||||| |||||| ||||||||||||
seq2  ATATGTAGCAGAAGATGGCCTCGTCAGCCATCATTGGAAAGAGAGGCCCC  698

seq1  TAGGTCTTGCAAACTTTATATGC----CGCAGTACAGGGCCAAGAAATAG  746
      |||||||||||||||||||||||    ||||||||||||||||||||| |
seq2  TAGGTCTTGCAAACTTTATATGCTGCACGCAGTACAGGGCCAAGAAATGG  748

seq1  GAGTGGGTGGGTGGGGGAGCAGG  769
      |||||||||||||||||||||||
seq2  GAGTGGGTGGGTGGGGGAGCAGG  771

seq1: chr5_15140192_15141213
seq2: B6Ng01-263E03.g_66_1084 (reverse)

seq1  GAAGTCTGTCATGCTTTGAGACCT-TCCTCCTAGCTTCCTGGAAGCCAGT  49
      |||||||||||||| |||||||||  ||||||||||||||||||||||||
seq2  GAAGTCTGTCATGC-TTGAGACCTCCCCTCCTAGCTTCCTGGAAGCCAGT  49

seq1  CTTCTCCAACTGGCCTTCAGATGAAGATCTAGAACTCTCAGCTCCTCCTG  99
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  CTTCTCCAACTGGCCTTCAGATGAAGATGTAGAACTCTCAGCTCCT-CTG  98

seq1  AACCATGCCTGCCCTGGCACTGCCATGCTCCTGCCTTGATGATAATGGAC  149
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACCATGCCTGCTCTGGCACTGCCATGCTCCTGCCTTGATGATAATGGAC  148

seq1  TGAAACTCTGAACCTGTAGGACAGGCCCAATTAAATGGTCTCCTTTTAAG  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCTGAACCTGTAGGACAGGCCCAATTAAATGGTCTCCTTTTAAG  198

seq1  AGTTGCCATGGTCATAGTGTCTGTTTACAGCAGTAAAACCCTAACTAAGA  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTTGCCATGGTCATAGTGTCTGTTTACAGCAGCAAAACCCTAACTAAGA  248

seq1  CATATTATATCTGGACAAAAATAAAATTTTTCTTATTCTCAAAGATTATT  299
      ||   |||||||||  ||||||||||||||||||||||||||||||||||
seq2  CA---TATATCTGGGAAAAAATAAAATTTTTCTTATTCTCAAAGATTATT  295

seq1  GCAAATTTTTACACATAAAGCAACAGGACACTTGAGCATATTGCTCAATT  349
      |||||||||||||| ||| |||||| ||||||||||||||||||||||||
seq2  GCAAATTTTTACACGTAATGCAACAAGACACTTGAGCATATTGCTCAATT  345

seq1  ATTACATTGAAAATATATAGTGCTGGGTAGTCTTAAAGGATATTGTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTACATTGAAAATATATAGTGCTGGGTAGTCTTAAAGGATATTGATAAA  395

seq1  AAGAAACATATATGGATTACATATAGTATAGAACCATAGTTACATGATTA  449
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGATATGGATTACATATAGTATAGAACCATAGTTACATGATTA  445

seq1  GAGGTGAGAGAAGTTACTTATGAGAGTGTTAAGAACCACTTGGTCAATAA  499
      ||||||||||||||||||||||||||||||||| || |||||| ||||||
seq2  GAGGTGAGAGAAGTTACTTATGAGAGTGTTAAGCACAACTTGGCCAATAA  495

seq1  TGAGCCATTCTTTGAATATCTTCTAGGTCCTTGCTCCTTCAGTCATCTCT  549
      ||| |||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TGAACCATTCTTTGAATATCCTCTAGGTCCTTGCTCCTTCAGCCATCTCT  545

seq1  GTGATCTGTTAAGTACCATTTACATATCAACTAGAAACTGTTTCTCAAGT  599
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGTTAAGTACCATTTACATATCAACTAGAAACTGTTTCTCAAGT  595

seq1  CTACTTTCTCTGAATGTCTAATTAAAATTAATAAGAAAAAATTTGAAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTACTTTCTCTGAATGTCTAATTAAAATTAATAAGAAAAAATTTGAAAAT  645

seq1  CAATTATGGCAAGAGGCCAGAAACATTTCTTTCTTCTTTTACAATTAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGGCAAGAGGCCAGAAACATTTCTTTCTTCTTTTACAATTAATT  695

seq1  TCATGCTTATTTTGTAAGAATATTTATTAAGGTTTTGTAAAAAGGATGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCATGCTTATTTTGTAAGAATATTTATTAAGGTTTTGTAAAAAGGTTGGA  745

seq1  TTAAGAATGACCACTTGAAGACAA-TTTTTTTTCTCTCAATGAATGATTT  798
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAAGAATGACCACTTGAAGACAATTTTTTTTTCTCTCAATGAATGATTT  795

seq1  TCATTTTACTGCTCAAATTTCAATATATTCTTTAATCTACAACATCCACA  848
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCATTTTACTGCTCATATTTCAATATATTCTTTAATCTACAACATCCACA  845

seq1  TTTCATTGTGGGGCAAAGTGGACTGTGCCACCAGACAGGAGAACTGGTAA  898
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCATTGTGGGGCAAAGTGGACTGTGCCACTAGACAGGAGAACTGGTAA  895

seq1  GGTTGGGTCTCTATCTATGCCCCTGAGCTAAGGCTGTCCCATAACCCTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTCTCTATCTATGCCCCTGAGCTAAGGCTGTCCCATAACCCTTA  945

seq1  AAGAATTAGAAGCAGTCATTAATAGTCTCTCAACCAAACAAATCCCAGGA  998
      ||||||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  AAGAATTAGAAGCAGTCATTAATAGTCTCCCAAACAAACAAATCCCAGGA  995

seq1  ACAGATGGGTTTAGTGCAGAATTC  1022
      ||||||||||||||||||||||||
seq2  ACAGATGGGTTTAGTGCAGAATTC  1019