BAC Information

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BAC

Clone NameB6Ng01-263F14
Chromosome5 (Build37)
Map Location 27,165,416 - 27,311,817
singlet/doubletdoublet
Overlap geneDpp6
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneB930011P16Rik, Speer4b, Paxip1, Htr5a, EG433862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263F14.bB6Ng01-263F14.g
ACCGA067542GA067543
length2821,139
definitionB6Ng01-263F14.b B6Ng01-263F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,311,536 - 27,311,817)(27,165,416 - 27,166,529)
sequence
tgctccaagcaagggtggtggtggaggggggaggctctgagcacttgctg
ggggaatagttgttggggcagctatcctcagcggtcccaaggtctctgag
cagtaagatggcataaagaagattcctcccctggcacacatcctcacatc
aaaacctaactgatggtggcatcccaagcaaagaaaaaaattaaacatgt
tttccttttcatgtttaaataattctccctgccctaaaagggtagatttt
tcttttttggtgggggtggggcaggagggggt
gaattcataaccactatgcctcaagatcttcatgcgagatctacgtcaga
aacttgtaacttccagcctccagattaggatcacaggtgagccttccaat
tctggattgtagttcattccagatatagtcaagttgacaaccaggaatag
ccaatacagacatccttagcttttgctttctggggaaaagcttttcccca
ctgtgtctgaaggtaagatcttggttgacatattttcctcttcagcactt
aaacacggtctgtctcctgtcctgcagagtgcattccacaaaatccactg
gcagctatatcctgtttgtctcataatagccctctcttactgatgtctaa
caaactggttctgtgtcttggtgaaatcctttaaaggatgagtttgatga
aggttttatgtatggggatgatcttctttcctacagaccaagaaagtttt
catccattctgtctttagatgtggtttctctctggtcttttcttatcttc
cagaaaatcatattatatgtataatgaatcttgatagtacattccaatta
tatcatccatgatctcacctattatagataactaggccaactctttcttt
ttgttgatattaatagatttttctcccttttgattgggtaactttaaatg
atattattttgttgatattaatagattttatcccttttgattgggtagcc
ttgctaaaagtttagattatatttttaactattttctttagggtttatat
tttgttgtcttatttgctttcttgattgtacatttttttataaaatttta
aattcttgaaagttgataaacatcttaaatatttttactactttaaaata
tttcatgtgtctatgtttatgtgtgacagcatgtgtatgcatgtgtgtct
atctatgtgttcatgggttgcatgtaaggagtgcctctggtgtatctctg
taaatggtgtctctgtggtgtgtgttgtggtttagaacacacatggaaca
ttgtagtaatttagccattcagaagacatttggtgcaagactttagtttt
tttctttcttctaccaggtgattttccagtgttggcgaaggtcaattaga
cctgaagcaagacatcattaacataactgagcctagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_27311536_27311817
seq2: B6Ng01-263F14.b_50_331 (reverse)

seq1  ACCCCCTCCTGCCCCACCCCCACCAAAAAAGAAAAATCTACCCTTTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTCCTGCCCCACCCCCACCAAAAAAGAAAAATCTACCCTTTTAGG  50

seq1  GCAGGGAGAATTATTTAAACATGAAAAGGAAAACATGTTTAATTTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGAATTATTTAAACATGAAAAGGAAAACATGTTTAATTTTTTTC  100

seq1  TTTGCTTGGGATGCCACCATCAGTTAGGTTTTGATGTGAGGATGTGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGGGATGCCACCATCAGTTAGGTTTTGATGTGAGGATGTGTGCC  150

seq1  AGGGGAGGAATCTTCTTTATGCCATCTTACTGCTCAGAGACCTTGGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGAATCTTCTTTATGCCATCTTACTGCTCAGAGACCTTGGGACC  200

seq1  GCTGAGGATAGCTGCCCCAACAACTATTCCCCCAGCAAGTGCTCAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGATAGCTGCCCCAACAACTATTCCCCCAGCAAGTGCTCAGAGCC  250

seq1  TCCCCCCTCCACCACCACCCTTGCTTGGAGCA  282
      ||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCCACCACCACCCTTGCTTGGAGCA  282

seq1: chr5_27165416_27166529
seq2: B6Ng01-263F14.g_67_1205

seq1  GAATTCATAACCACTATGCCTCAAGATCTTCATGCGAGATCTACGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACCACTATGCCTCAAGATCTTCATGCGAGATCTACGTCAGA  50

seq1  AACTTGTAACTTCCAGCCTCCAGATTAGGATCACAGGTGAGCCTTCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTAACTTCCAGCCTCCAGATTAGGATCACAGGTGAGCCTTCCAAT  100

seq1  TCTGGATTGTAGTTCATTCCAGATATAGTCAAGTTGACAACCAGGAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTGTAGTTCATTCCAGATATAGTCAAGTTGACAACCAGGAATAG  150

seq1  CCAATACAGACATCCTTAGCTTTTGCTTTCTGGGGAAAAGCTTTTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACAGACATCCTTAGCTTTTGCTTTCTGGGGAAAAGCTTTTCCCCA  200

seq1  CTGTGTCTGAAGGTAAGATCTTGGTTGACATATTTTCCTCTTCAGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGAAGGTAAGATCTTGGTTGACATATTTTCCTCTTCAGCACTT  250

seq1  AAACACGGTCTGTCTCCTGTCCTGCAGAGTGCATTCCACAAAATCCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACGGTCTGTCTCCTGTCCTGCAGAGTGCATTCCACAAAATCCACTG  300

seq1  GCAGCTATATCCTGTTTGTCTCATAATAGCCCTCTCTTACTGATGTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTATATCCTGTTTGTCTCATAATAGCCCTCTCTTACTGATGTCTAA  350

seq1  CAAACTGGTTCTGTGTCTTGGTGAAATCCTTTAAAGGATGAGTTTGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGGTTCTGTGTCTTGGTGAAATCCTTTAAAGGATGAGTTTGATGA  400

seq1  AGGTTTTATGTATGGGGATGATCTTCTTTCCTACAGACCAAGAAAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTATGTATGGGGATGATCTTCTTTCCTACAGACCAAGAAAGTTTT  450

seq1  CATCCATTCTGTCTTTAGATGTGGTTTCTCTCTGGTCTTTTCTTATCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTCTGTCTTTAGATGTGGTTTCTCTCTGGTCTTTTCTTATCTTC  500

seq1  CAGAAAATCATATTATATGTATAATGAATCTTGATAGTACATTCCAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCATATTATATGTATAATGAATCTTGATAGTACATTCCAATTA  550

seq1  TATCATCCATGATCTCACCTATTATAGATAACTAGGCCAACTCTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCATGATCTCACCTATTATAGATAACTAGGCCAACTCTTTCTTT  600

seq1  TTGTTGATATTAATAGATTTTTCTCCCTTTTGATTGGGTAACTTTAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATATTAATAGATTTTTCTCCCTTTTGATTGGGTAACTTTAAATG  650

seq1  ATATTATTTTGTTGATATTAATAGATTTTATCCCTTTTGATTGGGTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTTGTTGATATTAATAGATTTTATCCCTTTTGATTGGGTAGCC  700

seq1  TTGCTAAAAGTTTAGATTATATTTTTAACTATTTTCTTTAGGGTTTATA-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGCTAAAAGTTTAGATTATATTTTTAACTATTTTCTTTAGGGTTTATAT  750

seq1  TTTGTTGTCTTATTTGCTTTCTTGATTGTACATTTTTTTATAAAATTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTCTTATTTGCTTTCTTGATTGTACATTTTTTTATAAAATTTTA  800

seq1  AATTCTTGAAAGTTGATAAACATCTTAAATATTTTTACTACTTTAAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGAAAGTTGATAAACATCTTAAATATTTTTACTACTTTAAAATA  850

seq1  -TTCATGTGTCTATGTTTATGTGTGACAGCATGTGTATGCATGTGTGTCT  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGTCTATGTTTATGTGTGACAGCATGTGTATGCATGTGTGTCT  900

seq1  ATCTATGTGTTCAT-GGTTGCATGTAA-GAGTGCCTCT-GTGTATCTCTG  945
      |||||||||||||| |||||||||||| |||||||||| |||||||||||
seq2  ATCTATGTGTTCATGGGTTGCATGTAAGGAGTGCCTCTGGTGTATCTCTG  950

seq1  TAAAT-GTGTCTCTGTGTGTGTGTGT----GTTTAG-ACACACAT-GAAC  988
      ||||| ||||||||||| ||||||||    |||||| |||||||| ||||
seq2  TAAATGGTGTCTCTGTG-GTGTGTGTTGTGGTTTAGAACACACATGGAAC  999

seq1  A-TGTAGT-ATTTAG-CAATCAGAAGACATT--GTGCAAGAC-TTAGTTT  1032
      | |||||| |||||| || ||||||||||||  ||||||||| |||||||
seq2  ATTGTAGTAATTTAGCCATTCAGAAGACATTTGGTGCAAGACTTTAGTTT  1049

seq1  TTCTC---CTTCTACCCAGTGA-TTTCCAGTTGTTGCGAAGGTC-ATTAG  1077
      || ||   ||||||||  |||| ||||||||  | ||||||||| |||||
seq2  TTTTCTTTCTTCTACCAGGTGATTTTCCAGTGTTGGCGAAGGTCAATTAG  1099

seq1  ACCTGGAAGC-AGACACCATT-ACAT-ACTGAG-CTAGCTT  1114
      |||| ||||| ||||| |||| |||| |||||| |||||||
seq2  ACCT-GAAGCAAGACATCATTAACATAACTGAGCCTAGCTT  1139