BAC Information

Click to search

BAC

Clone NameB6Ng01-264D13
Chromosome5 (Build37)
Map Location 78,251,511 - 78,252,698
singlet/doubletsinglet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264D13.bB6Ng01-264D13.g
ACCGA068180GA068181
length1,2151,202
definitionB6Ng01-264D13.b B6Ng01-264D13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcacaccagtcagaatggctaagatcagaaattcaggtgacagc
agatgctggcaaggatgtggagaatgaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctatacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtttggacactatgcccctccttagaattgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccgggcctagcaaaca
cagaagtggatgctcacagtcagctaattggatggatcacagggctccca
atggaggagctagaggaagtacccaaggagcttaaaggatctgcacccta
taggtggaacaacattatgaacctaaccagtaccctggagctctttgacc
tctagctgcaatatgtattcaaaagaatgcttagtccggccaatcacttg
aagaagaggtccaatggacacgaaaaccttctattgccccagtacaaggg
gaacgcatgccaacgggactgtcggtagggcagtggccacgtataatgac
atgacagcgcacgta
gaattcctgtatatgcaacaaagaaagacatagtataaagaaggtgttgt
gctttcattttagggaataactagagaaagatgttgaaaatgttatatta
aggcagcgacaaaagactgagaaagatgagaaaaactataactaaagtca
acttgaagtggtgtcaaagactcccactgtgtgtggaatgtagtttccca
gtgatttaaagtgtagctgcctgcaaaacctcctcatttgtacagatgag
tatttgaaatttctcttaacaaaatcaaaacctgcagcagggcatggtgt
cacaagtctgcagtctcagcactttgggagacagaaataggaatattatg
aggtgagtttcaaaaataaaaacaaataacagaatgtagagctctgtttt
catatcacgattttagttaaatatggttttgacatgttcaattactgagg
ttcagtgttctgtgttcacacttctctgacatccctctctaggatattag
cccatttagcaatgagcctgtgatcctcccgggtggtgaggccgaagtct
ggggtcatacccaacagtcgtgtatagattttaaaaaaatccacttgttt
aattgggagattaatattgaacagttagcatggaacaatttgcattactt
catgttgagaaattcaccgagctgttgaatgtagaaagtcaacagttttg
gggctagggttgattttcctagtatcttctctgccaaggaccagcccttg
gcttgaggaggagtttctcagggaaggggtgtctaggagccacaaaaaca
gacaacttgaagtcaaattgtggggttcaagatggtggtctaccttctgc
tcaagacagcttccagatttgttctctgtgttctgctttctggagagagc
tttctcaatgtaaatctaaaaataacctcctttgggataactcaacctct
tgcagaccaaaaagtccaggtttttatttacatatcaatttagtctttac
ctcaaggttccctttggattatcccaataaaatcagcaccccatgatccc
agcccttgattcctaaccaagaggacagcaagtgcagcacagaacattac
gaataacctgggtggggatcccacccaggaataccatctaaccaatcctg
accctaattcctctggatcaggctgaccctggactcaggaatcctgtcct
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78251511_78252698
seq2: B6Ng01-264D13.g_65_1266

seq1  GAATTCCTGTATATGCAACAAAGAAAGACATAGTATAAAGAAGGTGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTATATGCAACAAAGAAAGACATAGTATAAAGAAGGTGTTGT  50

seq1  GCTTTCATTTTAGGGAATAACTAGAGAAAGATGTTGAAAATGTTATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATTTTAGGGAATAACTAGAGAAAGATGTTGAAAATGTTATATTA  100

seq1  AGGCAGCGACAAAAGACTGAGAAAGATGAGAAAAACTATAACTAAAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCGACAAAAGACTGAGAAAGATGAGAAAAACTATAACTAAAGTCA  150

seq1  ACTTGAAGTGGTGTCAAAGACTCCCACTGTGTGTGGAATGTAGTTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGTGGTGTCAAAGACTCCCACTGTGTGTGGAATGTAGTTTCCCA  200

seq1  GTGATTTAAAGTGTAGCTGCCTGCAAAACCTCCTCATTTGTACAGATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTAAAGTGTAGCTGCCTGCAAAACCTCCTCATTTGTACAGATGAG  250

seq1  TATTTGAAATTTCTCTTAACAAAATCAAAACCTGCAGCAGGGCATGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAATTTCTCTTAACAAAATCAAAACCTGCAGCAGGGCATGGTGT  300

seq1  CACAAGTCTGCAGTCTCAGCACTTTGGGAGACAGAAATAGGAATATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTCTGCAGTCTCAGCACTTTGGGAGACAGAAATAGGAATATTATG  350

seq1  AGGTGAGTTTCAAAAATAAAAACAAATAACAGAATGTAGAGCTCTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTTTCAAAAATAAAAACAAATAACAGAATGTAGAGCTCTGTTTT  400

seq1  CATATCACGATTTTAGTTAAATATGGTTTTGACATGTTCAATTACTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACGATTTTAGTTAAATATGGTTTTGACATGTTCAATTACTGAGG  450

seq1  TTCAGTGTTCTGTGTTCACACTTCTCTGACATCCCTCTCTAGGATATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTTCTGTGTTCACACTTCTCTGACATCCCTCTCTAGGATATTAG  500

seq1  CCCATTTAGCAATGAGCCTGTGATCCTCCCGGGTGGTGAGGCCGAAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTAGCAATGAGCCTGTGATCCTCCCGGGTGGTGAGGCCGAAGTCT  550

seq1  GGGGTCATACCCAACAGTCGTGTATAGATTTTAAAAAAATCCACTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATACCCAACAGTCGTGTATAGATTTTAAAAAAATCCACTTGTTT  600

seq1  AATTGGGAGATTAATATTGAACAGTTAGCATGGAACAATTTGCATTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAGATTAATATTGAACAGTTAGCATGGAACAATTTGCATTACTT  650

seq1  CATGTTGAG-AATTCACCGAGCTGTTGAATGTAGAAAGTCAACAGTTTTG  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGAGAAATTCACCGAGCTGTTGAATGTAGAAAGTCAACAGTTTTG  700

seq1  GGGCTAGGGTTGATTTTCCTAGTATCTTCTCTGCCAAGGACCAGCCCTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGGTTGATTTTCCTAGTATCTTCTCTGCCAAGGACCAGCCCTTG  750

seq1  GCTTGAGGAGGAG-TTCTCAGGGAAGGGGTGTCTAGGAGCCACAAAAACA  798
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGGAGGAGTTTCTCAGGGAAGGGGTGTCTAGGAGCCACAAAAACA  800

seq1  GACAACTTGAAGTCAAATTGT-GGGTTCAAGATGGTGGTCTACCTTCTGC  847
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACAACTTGAAGTCAAATTGTGGGGTTCAAGATGGTGGTCTACCTTCTGC  850

seq1  TCAAGACAGCTTTCCAGA-TTGTTCTCTGTGTTCTGCTTTCTGGAGAGAG  896
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  TCAAGACAGC-TTCCAGATTTGTTCTCTGTGTTCTGCTTTCTGGAGAGAG  899

seq1  CTTTCTC-ATGTAATTCTAAAAAT-ACCTC--TTTGGATAACTC-ATCTC  941
      ||||||| |||||| ||||||||| |||||  || ||||||||| | |||
seq2  CTTTCTCAATGTAAATCTAAAAATAACCTCCTTTGGGATAACTCAACCTC  949

seq1  TTGCAGACCAAAAAGTCCAGTTTTTATTTTACATATCAATTTAGTCTTTA  991
      |||||||||||||||||||| ||||  |||||||||||||||||||||||
seq2  TTGCAGACCAAAAAGTCCAGGTTTTTATTTACATATCAATTTAGTCTTTA  999

seq1  CCTC-AGGTTCCCTTTTGATTATCCCA--TAAATCAGCACCCCATGATCC  1038
      |||| ||||||||||| ||||||||||   ||||||||||||||||||||
seq2  CCTCAAGGTTCCCTTTGGATTATCCCAATAAAATCAGCACCCCATGATCC  1049

seq1  CAGCCCCTTGATT-CTTACAAAGA-GACAGCAAGTGCAGGCACAG-ACAA  1085
      ||| ||||||||| || || |||| ||||||||||||| |||||| ||| 
seq2  CAG-CCCTTGATTCCTAACCAAGAGGACAGCAAGTGCA-GCACAGAACAT  1097

seq1  TAAGA--TAGCTGGGT-GGGATCCCACCCAGGAATTACCATTCTAACCAT  1132
      || ||   | |||||| ||||||||||||||||| ||||| |||||||| 
seq2  TACGAATAACCTGGGTGGGGATCCCACCCAGGAA-TACCA-TCTAACCAA  1145

seq1  GTCTGACCTAAATTCTCTCTGACCCAAGCTGACCTTGAACTCAGGAATC-  1181
        ||||||  ||||| |||||   || ||||||| || ||||||||||| 
seq2  TCCTGACCCTAATTC-CTCTGGATCAGGCTGACCCTGGACTCAGGAATCC  1194

seq1  -TTCCTGC  1188
        ||||||
seq2  TGTCCTGC  1202