BAC Information

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BAC

Clone NameB6Ng01-264I16
Chromosome5 (Build37)
Map Location 117,628,847 - 117,630,011
singlet/doubletsinglet
Overlap geneTaok3
Upstream geneCcdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3
Downstream genePebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264I16.bB6Ng01-264I16.g
ACCGA068420GA068421
length1,1811,164
definitionB6Ng01-264I16.b B6Ng01-264I16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctagaagaaggagaaaaaatgaaaataagctatttcagagccct
cctagggacagacagaaaacgggagacgtcctgcttcctctctggctcct
atggaaatatttttagcttcgaataggatatctgtgttctattttctgtt
ttttggtgcaccaaattgtctatatgtctgtcaactcgtgtttgtttttg
cttggatgattgaatgattgttgttctgtgtttcatgttgaaaaataaaa
aagcagtctcagtctgcacagcaaaaaatgacaagttagctgcacagtgg
ctgggagtcaagtacagctgaaaaagccctgctgaaggctgattgcaaat
ggagcttttaaaggggcaggcagccttttgcttgtaacagaaagttagct
taaaattggaaacccaaggttggagttattctaaacaacataagaaaaca
ggtaatatgcaaaagcaatgtataaagggtagaaagagtatgtttgaaaa
taaagtacatatctttacaaatagaaggaaaaacctttcaaggtataatg
gatacaggagcagataaaagcattatatctagtaagtggtggcctgcttc
ttggcctgttaatcaatcgtcacatagcttacaaggattaggatatgagg
ctaccccaactataagtgcaaaatccttacaatggaaagataaaaaagga
aggacagggctttttcaaccatacgtactccctttgcctgtaaacttgtg
ggggagagatgtgttatcagctatgaactttatattgactaatgattact
ctcagaaaagcaaggaaatgatgaaaggaatgggatatatacctgggact
aggtcttggaaaaattttgcaaggtagaattttaccagttaaagccactg
taaaggcagacaagaaagggctgggtttttttctaggggccactgaagag
cctttgcccatcccgtagcatacggaggacatggtgtagtgcctcaatgg
ccctttacccctctgagaagttaaagcagctaagattagtacaggacgta
gatctgggcatggtggagcccactcattcaccttgcatacccccaatttt
gtgtaagaaaagtcaaggtaaagtgaactgtactgactagagcattaatg
ccaaattgcaaggatatggcttcctggttta
gaattcatctctggtcattgaatgcacagaaacctccctttactgttgac
agacttttctatgacctccacgttcagttatatagtcccatcctggcagc
atagcccacaggtcaagagatcaggcactagagctgggaaggcagctcag
tggataggagcgcttgctttgcagacacctggacccaagttcaaatctcc
accacccacataaaacattggttgaaactttgtgtgtctatcaccccagc
attgtgtgtcagagacaggaggatcctgagagttagctggccagtgagag
accctaatgcagagggtgacagaggctgcctgacatcctgctctgccccc
tgcatgcaagctgccccccacccacagacctgtgcatactgtttacggta
ctatgtactggagtacagactgtctcagggtacaaagaccctaaagtctc
gctcagtgctggacacacaggtgacatttagtatgcttgctgagtgaatg
aaggaatgtgtgataaattaagcaaataagcaaaaataagctttaaaaag
aattaggattctgtaaatattattgataatatatatagatgaatgttaat
caagtctgaggaccacgggatgtattattattgtattttgcaatcgttta
agcatttatattatgtgtttggttcatatcatgtatttgatagctagata
gttatatatcattatgtcacacaatttggttcaatctattagaccaattt
ggaatttataaagccagatgaacaccatttttgcactggtcttaaatatt
tttcatttttatttatgtgtatgtgtgtctgtgcatcccatgagtgcagt
gcccagagaggacagaagagagcatcagatcccagagaactggagttaga
cgctgtgagcctcttgatatgggtactgaaatcaaaccaggtccttttca
agagcagcctgtgctcttaacctctgaccggtctcccagccccagggtct
tgatttaaggacccacataaaagtagtgtttatttttctgaagctcagta
gcattggaggctcagttttctgggcctccatcaaatagcagacgtacaca
aggtggcttaaataccaagtagattccagtggaggctggctcatggttta
gaacaccctcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_117628847_117630011
seq2: B6Ng01-264I16.g_68_1231

seq1  GAATTCATCTCTGGTCATTGAATGCACAGAAACCTCCCTTTACTGTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTGGTCATTGAATGCACAGAAACCTCCCTTTACTGTTGAC  50

seq1  AGACTTTTCTATGACCTCCACGTTCAGTTATATAGTCCCATCCTGGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCTATGACCTCCACGTTCAGTTATATAGTCCCATCCTGGCAGC  100

seq1  ATAGCCCACAGGTCAAGAGATCAGGCACTAGAGCTGGGAAGGCAGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCACAGGTCAAGAGATCAGGCACTAGAGCTGGGAAGGCAGCTCAG  150

seq1  TGGATAGGAGCGCTTGCTTTGCAGACACCTGGACCCAAGTTCAAATCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGGAGCGCTTGCTTTGCAGACACCTGGACCCAAGTTCAAATCTCC  200

seq1  ACCACCCACATAAAACATTGGTTGAAACTTTGTGTGTCTATCACCCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCACATAAAACATTGGTTGAAACTTTGTGTGTCTATCACCCCAGC  250

seq1  ATTGTGTGTCAGAGACAGGAGGATCCTGAGAGTTAGCTGGCCAGTGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGTCAGAGACAGGAGGATCCTGAGAGTTAGCTGGCCAGTGAGAG  300

seq1  ACCCTAATGCAGAGGGTGACAGAGGCTGCCTGACATCCTGCTCTGCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAATGCAGAGGGTGACAGAGGCTGCCTGACATCCTGCTCTGCCCCC  350

seq1  TGCATGCAAGCTGCCCCCCACCCACAGACCTGTGCATACTGTTTACGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCAAGCTGCCCCCCACCCACAGACCTGTGCATACTGTTTACGGTA  400

seq1  CTATGTACTGGAGTACAGACTGTCTCAGGGTACAAAGACCCTAAAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTACTGGAGTACAGACTGTCTCAGGGTACAAAGACCCTAAAGTCTC  450

seq1  GCTCAGTGCTGGACACACAGGTGACATTTAGTATGCTTGCTGAGTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGCTGGACACACAGGTGACATTTAGTATGCTTGCTGAGTGAATG  500

seq1  AAGGAATGTGTGATAAATTAAGCAAATAAGCAAAAATAAGCTTTAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGTGTGATAAATTAAGCAAATAAGCAAAAATAAGCTTTAAAAAG  550

seq1  AATTAGGATTCTGTAAATATTATTGATAATATATATAGATGAATGTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGATTCTGTAAATATTATTGATAATATATATAGATGAATGTTAAT  600

seq1  CAAGTCTGAGGACCACGGGATGTATTATTATTGTATTTTGCAATCGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTGAGGACCACGGGATGTATTATTATTGTATTTTGCAATCGTTTA  650

seq1  AGCATTTATATTATGTGTTTGGTTCATATCATGTATTTGATAGCTAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATATTATGTGTTTGGTTCATATCATGTATTTGATAGCTAGATA  700

seq1  GTTATATATCATTATGTCACACAATTTGGTTCAATCTATTAGACCAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATATCATTATGTCACACAATTTGGTTCAATCTATTAGACCAATTT  750

seq1  GGAATTTATAAAGCCAGATGAACACCATTTTTGCACTGGTCTTAAATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTATAAAGCCAGATGAACACCATTTTTGCACTGGTCTTAAATATT  800

seq1  TTTCA-TTTTATTTATGTGTATGTGTGTCTGTGCATCCCATGAGTGCAGT  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTATTTATGTGTATGTGTGTCTGTGCATCCCATGAGTGCAGT  850

seq1  GCCCAGAGAGGACAGAAGAGAGCATCAGATCCCAGAGAACTGGAGTTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGAGGACAGAAGAGAGCATCAGATCCCAGAGAACTGGAGTTAGA  900

seq1  CGCTGTGAGCCTCTTGATATGGGTACTGAAAATCAAACCCAGGTCCTTTT  949
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  CGCTGTGAGCCTCTTGATATGGGTACTG-AAATCAAA-CCAGGTCCTTTT  948

seq1  CAAGAGCAGCCTGTGCTCTTAACCTCTGACCCGTCTCCCCAGCCCCCAGG  999
      ||||||||||||||||||||||||||||||| |||| |||||||||  ||
seq2  CAAGAGCAGCCTGTGCTCTTAACCTCTGACCGGTCT-CCCAGCCCCAGGG  997

seq1  TCTTGATTTAA-GACCCACAT-AAAGTAGTGTTTA-TTTTCTG-AGCTCA  1045
      ||||||||||| ||||||||| ||||||||||||| ||||||| ||||| 
seq2  TCTTGATTTAAGGACCCACATAAAAGTAGTGTTTATTTTTCTGAAGCTC-  1046

seq1  AGTAGCATTG--AGCTCAAGTTTCTGGCCTCCCATCAAAATAGCAGACAG  1093
      ||||||||||   |||||  ||||||| |  ||||| ||||||||||| |
seq2  AGTAGCATTGGAGGCTCAGTTTTCTGGGCCTCCATC-AAATAGCAGAC-G  1094

seq1  TACAC-AGGTG--CTAAATACCCAAGTGAAGGGATCCAGGGTGGAGGGGT  1140
      ||||| |||||   |||||| ||||||    |  ||||  ||||| || |
seq2  TACACAAGGTGGCTTAAATA-CCAAGT---AGATTCCA--GTGGA-GGCT  1137

seq1  GGCTCAGTGGTTAGAACA--CTCACTG  1165
      ||||||  | ||||||||  |||||||
seq2  GGCTCATGGTTTAGAACACCCTCACTG  1164