BAC Information

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BAC

Clone NameB6Ng01-265J07
Chromosome5 (Build37)
Map Location 11,809,961 - 11,941,106
singlet/doubletdoublet
Overlap geneLOC623998, EG668043, LOC545732, LOC384144
Upstream geneLOC100041395, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265J07.bB6Ng01-265J07.g
ACCGA069193GA069194
length1,1301,115
definitionB6Ng01-265J07.b B6Ng01-265J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,940,002 - 11,941,106)(11,809,961 - 11,811,069)
sequence
gaattcaaacagaagtggtggtcttacctgtgcttacaggtgtgtcaaca
ctcctgttagaccagctctttggaaggtatttgggtatggggtgctatgg
cacaggaccagcttcaggagctatggcataggatcagctccaggcccaga
tgaaaaccagaaaggcccagtccgaggctactccttggctccttttcctg
aggtctctgggcctctgaacagaagcggtggtcttacttgtggtcacaga
ctcatcagaaaacctggaaatatttgtgtatggagtgctgtgacacagaa
tcagctctaggcgctgtagctcaggatcagctctgggcgcagacagaaag
gtaggataactgtctcttgttgctcttaaattcctttgtcctgaggtctt
cagacaggtcccttggagtaggagtggtgggctcacagaagtgtccacac
tcctgggagaccaattctctccctgatctaataaaattttaaagtattga
aataataaatttaaaaaacttacccaagcaagaggattaaacattggaaa
acacattgagaagaaaatttcattttttattttaaaatagctgaagctag
aagtcatgtgctgcacttttattcataaagaacgacaggaaacttcttgt
catataaacgttgatatactgacaagtttctctttctaacccaagtatac
agtgagaattattgagctatttttctttttgctatatacctctgccaaga
aaaaagtcctgcacaatctagtgatcttaagggagttctcactaggggcc
agttttgtgatgaatgaaacacataataaatacattcctatattaaaatg
tggggatgcgaattcagagcagtgagtggctcccgggagggtgaaatcca
ggcccattgatttctcactaaaacctgggattatatcaacttctaatctc
ttcttggaatttaaatattcatttaggtctgccatctcctagcttattcg
gatgcatttatttggatgcctttgttactacttggtcattaattgcagaa
gaagtcattataaatatttatgaaggaataaaatcagaactaacttccct
ttttctactccagatcctactgaatttgtt
gaattcaattataaatgtgaaaattagctctcctgtggaaattaataatg
atgaatgtcccaatttattttagtgctacgtggtattttcatttgtcatg
atttaacatagagtctgctgtagcttcgatggaagttacaagaatagagg
gacatacaattgtagaagatttaatcactgactgggagacatccaaccct
aactgatacatgtggaacccaacccaacactcagggaagcccccagaaga
ggtgatggaaagattttaggaggcagaagacaaatatgcctgctttaaac
taacatcttttagatctattctagagggctgatcccagaataaacttgtt
tgatatacttagtgcaggcagtagccatgtaaattcgtgttctgctttgt
gtttggcatgttcctttcttacactcgcaggacagagagttcctgtgttc
atgaaatgatgttgtgctaccatacgttccttgacttttcttatcctttg
gatcctttttaacttcttttctttattttaacttctaatgcttcatcatc
tcttctttaacagatattgaagtgttaacatcagattatatttttaaagt
agaataatcatgccaaggttgcatgaaatatgagtgaaatgtgtggtgaa
gtgatttttagatgtgaagtattaaacaatactccataaataacaggcag
tgagtaaatagtggattttaaattgtctcatggttcaaatgtttgtaaga
catgataaagaacaagaaagtgaattattataccctgttactctgtttca
aatctactctcttttgtaatttcaaagaaagcatttacttaaaatcaatt
taagagcataaattgcatgtctaagaacaaattttgatagacactgtaat
tttttcaatcatcaaggagattcaagtaacttaatggaaaggaaatctta
attttgctaatgaattactgagctacaacttcttgctgtgcctttaactt
atgtgtgctgtctcagactgccctggcccacaatcaacttgatcaactca
aaataattctaataggaggattctatggaaccctgggcaaccatttttaa
tttctaagagataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11940002_11941106
seq2: B6Ng01-265J07.b_66_1173 (reverse)

seq1  AACAAATTCAGTA-GAACGTGAGTAGAAAAAGGGAAGTTTG-TCTGATTT  48
      ||||||||||||| || |  ||||||||||||||||||| | ||||||||
seq2  AACAAATTCAGTAGGATCTGGAGTAGAAAAAGGGAAGTTAGTTCTGATTT  50

seq1  TATCCTTTCATAAATA-TTATAATGACTTC-TCTGAAATTAATGACAAAG  96
      ||| | |||||||||| ||||||||||||| |||| |||||||||| |||
seq2  TATTCCTTCATAAATATTTATAATGACTTCTTCTGCAATTAATGACCAAG  100

seq1  TAGGTAACAAAGGCATCCAAA-AAATGCACCCGAATAAGCTAGGGAGATG  145
      || |||||||||||||||||| ||||||| |||||||||||| |||||||
seq2  TA-GTAACAAAGGCATCCAAATAAATGCATCCGAATAAGCTA-GGAGATG  148

seq1  GCAGACCTAAATGAATATTTAAATTCCAAGAAGAGATTTAGAAGTTGATA  195
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCAGACCTAAATGAATATTTAAATTCCAAGAAGAGA-TTAGAAGTTGATA  197

seq1  TAATCCCAGGTTTTAGTGAG-AATCAATTGGCCTGGATTTCACCCTCCC-  243
      |||||||||||||||||||| ||||||| |||||||||||||||||||| 
seq2  TAATCCCAGGTTTTAGTGAGAAATCAATGGGCCTGGATTTCACCCTCCCG  247

seq1  GGAGCCACTCACCTGCTCTGAATTCGCATCCCCACATTTTAATATAGGAA  293
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCACTCA-CTGCTCTGAATTCGCATCCCCACATTTTAATATAGGAA  296

seq1  TGTATTTATTATGTGTTTCATTCATCACAAAACTGGCCCCTAGTGAGAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATTATGTGTTTCATTCATCACAAAACTGGCCCCTAGTGAGAAC  346

seq1  TCCCTTAAGATCACTAGATTGTGCAGGACTTTTTTCTTGGCAGAGGTATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAGATCACTAGATTGTGCAGGACTTTTTTCTTGGCAGAGGTATA  396

seq1  TAGCAAAAAGAAAAATAGCTCAATAATTCTCACTGTATACTTGGGTTAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAAGAAAAATAGCTCAATAATTCTCACTGTATACTTGGGTTAGA  446

seq1  AAGAGAAACTTGTCAGTATATCAACGTTTATATGACAAGAAGTTTCCTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACTTGTCAGTATATCAACGTTTATATGACAAGAAGTTTCCTGT  496

seq1  CGTTCTTTATGAATAAAAGTGCAGCACATGACTTCTAGCTTCAGCTATTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTTATGAATAAAAGTGCAGCACATGACTTCTAGCTTCAGCTATTT  546

seq1  TAAAATAAAAAATGAAATTTTCTTCTCAATGTGTTTTCCAATGTTTAATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAAAATGAAATTTTCTTCTCAATGTGTTTTCCAATGTTTAATC  596

seq1  CTCTTGCTTGGGTAAGTTTTTTAAATTTATTATTTCAATACTTTAAAATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTTGGGTAAGTTTTTTAAATTTATTATTTCAATACTTTAAAATT  646

seq1  TTATTAGATCAGGGAGAGAATTGGTCTCCCAGGAGTGTGGACACTTCTGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGATCAGGGAGAGAATTGGTCTCCCAGGAGTGTGGACACTTCTGT  696

seq1  GAGCCCACCACTCCTACTCCAAGGGACCTGTCTGAAGACCTCAGGACAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCACCACTCCTACTCCAAGGGACCTGTCTGAAGACCTCAGGACAAA  746

seq1  GGAATTTAAGAGCAACAAGAGACAGTTATCCTACCTTTCTGTCTGCGCCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTAAGAGCAACAAGAGACAGTTATCCTACCTTTCTGTCTGCGCCC  796

seq1  AGAGCTGATCCTGAGCTACAGCGCCTAGAGCTGATTCTGTGTCACAGCAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGATCCTGAGCTACAGCGCCTAGAGCTGATTCTGTGTCACAGCAC  846

seq1  TCCATACACAAATATTTCCAGGTTTTCTGATGAGTCTGTGACCACAAGTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACACAAATATTTCCAGGTTTTCTGATGAGTCTGTGACCACAAGTA  896

seq1  AGACCACCGCTTCTGTTCAGAGGCCCAGAGACCTCAGGAAAAGGAGCCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACCGCTTCTGTTCAGAGGCCCAGAGACCTCAGGAAAAGGAGCCAA  946

seq1  GGAGTAGCCTCGGACTGGGCCTTTCTGGTTTTCATCTGGGCCTGGAGCTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGCCTCGGACTGGGCCTTTCTGGTTTTCATCTGGGCCTGGAGCTG  996

seq1  ATCCTATGCCATAGCTCCTGAAGCTGGTCCTGTGCCATAGCACCCCATAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGCCATAGCTCCTGAAGCTGGTCCTGTGCCATAGCACCCCATAC  1046

seq1  CCAAATACCTTCCAAAGAGCTGGTCTAACAGGAGTGTTGACACACCTGTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATACCTTCCAAAGAGCTGGTCTAACAGGAGTGTTGACACACCTGTA  1096

seq1  AGCACAGGTAAG  1105
      ||||||||||||
seq2  AGCACAGGTAAG  1108

seq1: chr5_11809961_11811069
seq2: B6Ng01-265J07.g_66_1180

seq1  GAATTCAATTATAAATGTGAAAATTAGCTCTCCTGTGGAAATTAATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATAAATGTGAAAATTAGCTCTCCTGTGGAAATTAATAATG  50

seq1  ATGAATGTCCCAATTTATTTTAGTGCTACGTGGTATTTTCATTTGTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTCCCAATTTATTTTAGTGCTACGTGGTATTTTCATTTGTCATG  100

seq1  ATTTAACATAGAGTCTGCTGTAGCTTCGATGGAAGTTACAAGAATAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACATAGAGTCTGCTGTAGCTTCGATGGAAGTTACAAGAATAGAGG  150

seq1  GACATACAATTGTAGAAGATTTAATCACTGACTGGGAGACATCCAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACAATTGTAGAAGATTTAATCACTGACTGGGAGACATCCAACCCT  200

seq1  AACTGATACATGTGGAACCCAACCCAACACTCAGGGAAGCCCCCAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATACATGTGGAACCCAACCCAACACTCAGGGAAGCCCCCAGAAGA  250

seq1  GGTGATGGAAAGATTTTAGGAGGCAGAAGACAAATATGCCTGCTTTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGAAAGATTTTAGGAGGCAGAAGACAAATATGCCTGCTTTAAAC  300

seq1  TAACATCTTTTAGATCTATTCTAGAGGGCTGATCCCAGAATAAACTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTTTTAGATCTATTCTAGAGGGCTGATCCCAGAATAAACTTGTT  350

seq1  TGATATACTTAGTGCAGGCAGTAGCCATGTAAATTCGTGTTCTGCTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATACTTAGTGCAGGCAGTAGCCATGTAAATTCGTGTTCTGCTTTGT  400

seq1  GTTTGGCATGTTCCTTTCTTACACTCGCAGGACAGAGAGTTCCTGTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCATGTTCCTTTCTTACACTCGCAGGACAGAGAGTTCCTGTGTTC  450

seq1  ATGAAATGATGTTGTGCTACCATACGTTCCTTGACTTTTCTTATCCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGATGTTGTGCTACCATACGTTCCTTGACTTTTCTTATCCTTTG  500

seq1  GATCCTTTTTAACTTCTTTTCTTTATTTTAACTTCTAATGCTTCATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTTTAACTTCTTTTCTTTATTTTAACTTCTAATGCTTCATCATC  550

seq1  TCTTCTTTAACAGATATTGAAGTGTTAACATCAGATTATATTTTTAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTAACAGATATTGAAGTGTTAACATCAGATTATATTTTTAAAGT  600

seq1  AGAATAATCATGCCAAGGTTGCATGAAATATGAGTGAAATGTGTGGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATCATGCCAAGGTTGCATGAAATATGAGTGAAATGTGTGGTGAA  650

seq1  GTGATTTTTAGATGTGAAGTATTAAACAATACTCCATAAATAACAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTAGATGTGAAGTATTAAACAATACTCCATAAATAACAGGCAG  700

seq1  TGAGTAAATAGTGGATTTTAAATTGTCTCATGGTTCAAATG-TTGTAAGA  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGTAAATAGTGGATTTTAAATTGTCTCATGGTTCAAATGTTTGTAAGA  750

seq1  CATGATAAAGAACAAGAAAGTGAATTATTATACCCTGTTACTCTGTTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAAAGAACAAGAAAGTGAATTATTATACCCTGTTACTCTGTTTCA  800

seq1  AATCTACTCTCTTTTGTAATTTCAAAGAAAGCATTTACTTAAAATCAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTCTCTTTTGTAATTTCAAAGAAAGCATTTACTTAAAATCAATT  850

seq1  TAAGAGCATAAA-TGCATGTCTAAGAACAAA-TTTGATAGACACTGTAA-  896
      |||||||||||| |||||||||||||||||| ||||||||||||||||| 
seq2  TAAGAGCATAAATTGCATGTCTAAGAACAAATTTTGATAGACACTGTAAT  900

seq1  TTTTTCAATCATC-AGGAGAATCAAGTAACTTAATGGAAAGGAAATCTTA  945
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TTTTTCAATCATCAAGGAGATTCAAGTAACTTAATGGAAAGGAAATCTTA  950

seq1  A-TTTGCTTATGAATTACTGAGCTACAAACTCTTGCTGTG-CTTTAACTT  993
      | |||||| |||||||||||||||||||  |||||||||| |||||||||
seq2  ATTTTGCTAATGAATTACTGAGCTACAACTTCTTGCTGTGCCTTTAACTT  1000

seq1  ATGTGTGCTTGTCTCAGACTG-CCTGGCCCACAATCA--CTGATCATCTC  1040
      |||||||| |||||||||||| |||||||||||||||   |||||| |||
seq2  ATGTGTGC-TGTCTCAGACTGCCCTGGCCCACAATCAACTTGATCAACTC  1049

seq1  AAAAATAAATTCTAATAGGAAGA-TCTATGGACCCTGGGGCAAACCATTT  1089
      ||||   ||||||||||||| || |||||||| ||  |||| ||||||||
seq2  AAAA--TAATTCTAATAGGAGGATTCTATGGAACCCTGGGC-AACCATTT  1096

seq1  TTATTTCCAAAGAGGATAGA  1109
      ||| || | |||| ||||||
seq2  TTAATTTCTAAGA-GATAGA  1115