BAC Information

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BAC

Clone NameB6Ng01-265J22
Chromosome5 (Build37)
Map Location 47,036,969 - 47,116,896
singlet/doubletdoublet
Overlap genenone
Upstream gene1600023N17Rik, Lcorl, LOC100041576, EG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265J22.bB6Ng01-265J22.g
ACCGA069220GA069221
length1,206681
definitionB6Ng01-265J22.b B6Ng01-265J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,036,969 - 47,038,187)(47,116,217 - 47,116,896)
sequence
gaattctatagttcaagggcatctgctgtataattttgtttaagagtcta
cagatccttccttcaaaacaaccttcaagagtgtaatcaatgattctaat
aaccccctgctctatacaatgtaagatatttcagacagattgcattagcc
tagcaaagaagagattaaaggggagaattcttactttttattagtaactc
aagaaaagatttgtataaactggtttaaaatactccatttattttcacca
agctggatttattatctaaaacttttcaaatatttaagaagagtatttgg
aattggatatcaagcacttataccagcaattttaatattaatatttatct
ttgttgaaagctgtatttgtatataacaaactttatagagattaaaatga
cttatcatgtcttttaggaccctacactatgtaaccaagccaagagaaca
ttaagcaggactgtgagtgccaaagggaactgtggctcaatgaaaatgct
tctgttatctctacctctgggctcctcatgtgatttaaagtactgaagtt
aatgttgatataaatgaaagacctgacacacacacatcaatgcaacagaa
cagacattcccaggatagacccacagaaacaccaccaactgatttttgac
aaaactacagagactactgaaaaaagaaagaattatttttcaataaattg
tgttgactcaattgttcattcatatgcagaaacagaaggcaaagtcatcc
accttatatgtccattatataccaacatggatcctaatctaaatataaaa
attgaatagttttagaagaaaatgtaagagaaaaatcttctctggtctgg
gtttagccgagttatagcattatgagactaggtatacaaaataatagaaa
tcctattttaatttcaccaaaattgaaaactctcataggctacacagagg
tgggctgtaaatataatatcaacaggtggggaggctgaatcaagggattg
tgcatttaaggctagactggactacacatgagcttctacattcacaggca
gcaaacacagcagcacgaaaaggaaataaataaaacaactataacaggaa
catttgtagtctcataccccacacaaaaaactacaaacaggaaatatgta
agtatgaactctaaccgtttacaataagtaacgtgggttgacatatttta
acagag

gaattctgtaacagggagtcgacctcctggaaccagagtgtcagagagtt
gtgaactgccaggtggcactgggaactgaactcagggtctctgacacagc
ctcaagccagttctccagcttggtatccttgccttaaaaataaataaata
aaatttccctgtcagtaaactatcacatctttaaaataaatatttgacat
ttaaaaaaacaaaaaagtaaaagtaactgctgtgtttttgtggcagtttc
ctagttaggaaggacagtccccattagcgaaatgagatggcagcctgtcc
tagaaggtgtgtctcctaatgtctgggtactgctttgtatttaaaaatca
ttggagttaaaatagcttcttacacttgtatcagaaattgagaaaaacac
agaagtggatgctcacagtcagctaatggatggatcacagggctcccaat
ggaggagctagagaaagtagccaagaagctaaagggatctgcaaccctat
aggtggaacaacattatgaactaaccagtaccccggagctcttgactcta
gctgcatatgtatcaaaagatggcctagtcggccatcactggaaagagag
gcccattggacacgcaaactttatatgccccagtacaggggaatgccagg
gccaaaaagggggagtgggtggggtagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47036969_47038187
seq2: B6Ng01-265J22.b_46_1251

seq1  GAATTCTATAGTTCAAGGGCATCTGCTGTATAATTTTGTTTAAGAGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGTTCAAGGGCATCTGCTGTATAATTTTGTTTAAGAGTCTA  50

seq1  CAGATCCTTCCTTCAAAACAACCTTCAAGAGTGTAATCAATGATTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTTCCTTCAAAACAACCTTCAAGAGTGTAATCAATGATTCTAAT  100

seq1  AACCCCCTGCTCTATACAATGTAAGATATTTCAGACAGATTGCATTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCTGCTCTATACAATGTAAGATATTTCAGACAGATTGCATTAGCC  150

seq1  TAGCAAAGAAGAGATTAAAGGGGAGAATTCTTACTTTTTATTAGTAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGAAGAGATTAAAGGGGAGAATTCTTACTTTTTATTAGTAACTC  200

seq1  AAGAAAAGATTTGTATAAACTGGTTTAAAATACTCCATTTATTTTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGATTTGTATAAACTGGTTTAAAATACTCCATTTATTTTCACCA  250

seq1  AGCTGGATTTATTATCTAAAACTTTTCAAATATTTAAGAAGAGTATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATTTATTATCTAAAACTTTTCAAATATTTAAGAAGAGTATTTGG  300

seq1  AATTGGATATCAAGCACTTATACCAGCAATTTTAATATTAATATTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATATCAAGCACTTATACCAGCAATTTTAATATTAATATTTATCT  350

seq1  TTGTTGAAAGCTGTATTTGTATATAACAAACTTTATAGAGATTAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAGCTGTATTTGTATATAACAAACTTTATAGAGATTAAAATGA  400

seq1  CTTATCATGTCTTTTAGGACCCTACACTATGTAACCAAGCCAAGAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATGTCTTTTAGGACCCTACACTATGTAACCAAGCCAAGAGAACA  450

seq1  TTAAGCAGGACTGTGAGTGCCAAAGGGAACTGTGGCTCAATGAAAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGGACTGTGAGTGCCAAAGGGAACTGTGGCTCAATGAAAATGCT  500

seq1  TCTGTTATCTCTACCTCTGGGCTCCTCATGTGATTTAAAGTACTGAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATCTCTACCTCTGGGCTCCTCATGTGATTTAAAGTACTGAAGTT  550

seq1  AATGTTGATATAAATGAAAGACCTGACACACACACATCAATGCAACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGATATAAATGAAAGACCTGACACACACACATCAATGCAACAGAA  600

seq1  CAGACATTCCCAGGATAGACCCACAGAAACACCACCAACTGATTTTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTCCCAGGATAGACCCACAGAAACACCACCAACTGATTTTTGAC  650

seq1  AAAACTACAGAGACTACTGAAAAAAGAAAGAATTATTTTTCAATAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACAGAGACTACTGAAAAAAGAAAGAATTATTTTTCAATAAATTG  700

seq1  TGTTGACTCAATTGTTCATTCATATGCAGAAACAGAAGGCAAAGTCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTCAATTGTTCATTCATATGCAGAAACAGAAGGCAAAGTCATCC  750

seq1  ACCTTATATGTCCATTATATACCAACATGGATCCTAATCTAAATATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATATGTCCATTATATACCAACATGGATCCTAATCTAAATATAAAA  800

seq1  ATTGAATAGTTTTAGAAGAAAATGTAAGAGAAAAATCTTCTCTGGTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATAGTTTTAGAAGAAAATGTAAGAGAAAAATCTTCTCTGGTCTGG  850

seq1  GTTTAGCCGAGTTATAGCATTATGAGACTAGGTATACAAAATAATAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCCGAGTTATAGCATTATGAGACTAGGTATACAAAATAATAGAAA  900

seq1  TCCTATTTTAATTTCACCAAAATTGAAAACTCTCATAGGCTACACAGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTTAATTTCACCAAAATTGAAAACTCTCATAGGCTACACAGAGG  950

seq1  TGGGCTGTAAATATAATATCAACAGGT-GGGAGGCTGAATCAAGGGATTG  999
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGCTGTAAATATAATATCAACAGGTGGGGAGGCTGAATCAAGGGATTG  1000

seq1  TGCATTTAAGGCTAGACTGGACTACACAATGAGCTTCTACATTCACAGCA  1049
      ||||||||||||||||||||||||||| ||||||||||||||||||||  
seq2  TGCATTTAAGGCTAGACTGGACTACAC-ATGAGCTTCTACATTCACAGGC  1049

seq1  AGCAAAACAACAGCAGCAACAAAAAAGAAATAAAATAAAAACAAACTATA  1099
      ||||||   |||||||| || |||| ||||| ||||||||   |||||| 
seq2  AGCAAA--CACAGCAGC-ACGAAAAGGAAAT-AAATAAAA--CAACTAT-  1092

seq1  AACAAGAACATTTGTAGTCTCATACCCCACACAAAAAAACTTACAAACAG  1149
      |||| |||||||||||||||||||||||||||||||||   |||||||||
seq2  AACAGGAACATTTGTAGTCTCATACCCCACACAAAAAA--CTACAAACAG  1140

seq1  --AATATGTAAGTTTATGAACTCATAACGTTTAACAATAAAGTAAAAATG  1197
        ||||||||||  ||||||||| ||||  || ||||| ||||   || |
seq2  GAAATATGTAAG--TATGAACTC-TAACCGTTTACAAT-AAGT---AACG  1183

seq1  TGGGTAGAC-TATTTTAACAGAG  1219
      ||||| ||| |||||||||||||
seq2  TGGGTTGACATATTTTAACAGAG  1206


seq1: chr5_47116217_47116896
seq2: B6Ng01-265J22.g_67_747 (reverse)

seq1  TCCCCTA-CCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCTGTACT  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCTGTACT  50

seq1  GGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGC  100

seq1  CGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGG  150

seq1  GTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTT  200

seq1  TAGCTTCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCC  250

seq1  ATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTTTCTCAATTTCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTTTCTCAATTTCTG  300

seq1  ATACAAGTGTAAGAAGCTATTTTAACTCCAATGATTTTTAAATACAAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTGTAAGAAGCTATTTTAACTCCAATGATTTTTAAATACAAAGC  350

seq1  AGTACCCAGACATTAGGAGACACACCTTCTAGGACAGGCTGCCATCTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCAGACATTAGGAGACACACCTTCTAGGACAGGCTGCCATCTCAT  400

seq1  TTCGCTAATGGGGACTGTCCTTCCTAACTAGGAAACTGCCACAAAAACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTAATGGGGACTGTCCTTCCTAACTAGGAAACTGCCACAAAAACAC  450

seq1  AGCAGTTACTTTTACTTTTTTGTTTTTTTAAATGTCAAATATTTATTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTACTTTTACTTTTTTGTTTTTTTAAATGTCAAATATTTATTTTA  500

seq1  AAGATGTGATAGTTTACTGACAGGGAAATTTTATTTATTTATTTTTAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGATAGTTTACTGACAGGGAAATTTTATTTATTTATTTTTAAGG  550

seq1  CAAGGATACCAAGCTGGAGAACTGGCTTGAGGCTGTGTCAGAGACCCTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATACCAAGCTGGAGAACTGGCTTGAGGCTGTGTCAGAGACCCTGA  600

seq1  GTTCAGTTCCCAGTGCCACCTGGCAGTTCACAACTCTCTGACACTCTGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTCCCAGTGCCACCTGGCAGTTCACAACTCTCTGACACTCTGGT  650

seq1  TCCAGGAGGTCGACTCCCTGTTACAGAATTC  680
      |||||||||||||||||||||||||||||||
seq2  TCCAGGAGGTCGACTCCCTGTTACAGAATTC  681


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