BAC Information

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BAC

Clone NameB6Ng01-266F01
Chromosome5 (Build37)
Map Location 94,068,946 - 94,070,094
singlet/doubletsinglet
Overlap geneC87414
Upstream gene4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909
Downstream geneLOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266F01.bB6Ng01-266F01.g
ACCGA069741GA069742
length1,2161,142
definitionB6Ng01-266F01.b B6Ng01-266F01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaggaaattcaaaatgccaagaagcacctaaagaaatg
gttcaacacccttagtcatccgggaaatgaaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaactcaggtgacag
caaatgctgatgaggatgtggaaaaagaggaaaacccctccactgctggt
gggattgcaggctggtacaattattttggaaataagtctctctctgttcc
tcagaaaatttgacatagtcctaccagagtatccagctataccacacatg
ggcatatattcagaagatgctccaccacgtaataaggatactttctctac
tatgttcatagtagccttatttataatagccagaagctggaaagaacctt
gatgctcttcaacagaggaatggatacaaaacatgtggtacatttacaca
gtggagtattactcagcctttaaaaagaatgaatttatgaaattcctagg
caaatggttggacctggagggccttatcctgagtgaggtaacccaatcac
aaaagaacacacatggtccgcaatcactgatttgttgacattaggccaaa
acctaggaataaccaagatacaattcacagactacatgaagctcaagaag
aagaaaaaccaaagtgtgggtactttggcccttcttagataggggaacta
aatattcacaggagcaaatatggagacaaagtatggagcagagactgaaa
gaaagtctacctagaaactgcaccacctggaaatccatgccatatacagt
caccaaacccagacactattgtggatgccaaaaagtgcaagctgacagga
acctgatatagctctcctgagaggctctgccagaaccctgagaaatacag
agccagatgctcacatccaaccattgggctaagcataggctccccaatgg
aagagttagggaaaggactgaaggagctgaagggtttaaaatcccataga
gacagcatatcaccaacaagaacccccagagttcaggactaactacccaa
cgagacatggagggacccatgtctctctccaccatattattagccaagat
gcattattggcatcatagagaaggagcctgatcttcctgagctctatgtt
cagctagtagattcaatggcagcagaaagagaggtatcaatttgtaatgt
taattatggaaaagtc
gaattccaggacagtcagggctatacagagaaaccctatctcaaaaacca
aaaaagggggggggcaagggacaaggaggaggaatgggatgaggaacaat
agaacaatcaagtggcagatcaggagtgggataataactggagggtaaaa
tgaattgaagaataattaaatttagtaataaaaattaaaaaaagaaaaaa
aaaacaaatcaaaaactgaataacaaaaaacaagcaaacaagaaacaaac
aaaaaaaacaagcaaaaaatataatacaaacaaaagtcttgtgttgtaga
tcaatattgaattctcactaaggaagatgacaactgtgggttcctacaac
tttcaggctctcttgggtcccaaaaacataccaaacccctccacacacac
actcacacacacacaaaagaaaaaagaaaaagaaaaagaaaaagaaaaag
aaaaggaaaggaaagaaaaatcaggaaatcaggtgaaacatgtgaaaatg
atctaaagcaaagactaaggtgagacatttgattaactcagaattgtaat
tcctgctattgggagttaatgattatcaaagttaaatgttctatagggct
acaatgtgagccagggtctcacaaaaacaaagaagaccatcatttcagtg
aaaggaaatatgaaggaacaggttagtcagaatgatctgatttccagcaa
acccagagcaacatgcccaagggcttagaaaattcttctatcaaagaaat
atataaagcacactaatgaagtatacaagctatcatagagatatattgga
gaagaggctaaaactgcattgggaatgaaacacaaggtcttcaatgtgtt
ttactaaagagacagaaaatgaaatttcctgtactatcctggagtctaaa
gagctctgcatcaaacggcttaaccctagggaaaccaatttacatacccg
ttgtgagtactgcagttctgagtcctagacaaagtaggcagttttttctg
cctcgaggtctgaatattttctgtctcactgaagactttatatgcctctc
tctgtacatcctatgccaccccacacccttccaactcgagtagactggaa
taagatggttactccaccttcagtctatatgtaacaatccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_94068946_94070094
seq2: B6Ng01-266F01.g_65_1206

seq1  GAATTCCAGGACAGTCAGGGCTATACAGAGAAACCCTATCTCAAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGTCAGGGCTATACAGAGAAACCCTATCTCAAAAACCA  50

seq1  AAAAAGGGGGGGGGCAAGGGACAAGGAGGAGGAATGGGATGAGGAACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGGGGGGGCAAGGGACAAGGAGGAGGAATGGGATGAGGAACAAT  100

seq1  AGAACAATCAAGTGGCAGATCAGGAGTGGGATAATAACTGGAGGGTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATCAAGTGGCAGATCAGGAGTGGGATAATAACTGGAGGGTAAAA  150

seq1  TGAATTGAAGAATAATTAAATTTAGTAATAAAAATTAAAAAAAGAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGAAGAATAATTAAATTTAGTAATAAAAATTAAAAAAAGAAAAAA  200

seq1  AAAACAAATCAAAAACTGAATAACAAAAAACAAGCAAACAAGAAACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATCAAAAACTGAATAACAAAAAACAAGCAAACAAGAAACAAAC  250

seq1  AAAAAAAACAAGCAAAAAATATAATACAAACAAAAGTCTTGTGTTGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAAGCAAAAAATATAATACAAACAAAAGTCTTGTGTTGTAGA  300

seq1  TCAATATTGAATTCTCACTAAGGAAGATGACAACTGTGGGTTCCTACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTGAATTCTCACTAAGGAAGATGACAACTGTGGGTTCCTACAAC  350

seq1  TTTCAGGCTCTCTTGGGTCCCAAAAACATACCAAACCCCTCCACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCTCTCTTGGGTCCCAAAAACATACCAAACCCCTCCACACACAC  400

seq1  ACTCACACACACACAAAAGAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACACACACAAAAGAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAG  450

seq1  AAAAGGAAAGGAAAGAAAAATCAGGAAATCAGGTGAAACATGTGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAGGAAAGAAAAATCAGGAAATCAGGTGAAACATGTGAAAATG  500

seq1  ATCTAAAGCAAAGACTAAGGTGAGACATTTGATTAACTCAGAATTGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAGCAAAGACTAAGGTGAGACATTTGATTAACTCAGAATTGTAAT  550

seq1  TCCTGCTATTGGGAGTTAATGATTATCAAAGTTAAATGTTCTATAGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTATTGGGAGTTAATGATTATCAAAGTTAAATGTTCTATAGGGCT  600

seq1  ACAATGTGAGCCAGGGTCTCACAAAAACAAAGAAGACCATCATTTCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTGAGCCAGGGTCTCACAAAAACAAAGAAGACCATCATTTCAGTG  650

seq1  AAAGGAAATATGAAGGAACAGGTTAGTCAGAATGATCTGATTTCCAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATATGAAGGAACAGGTTAGTCAGAATGATCTGATTTCCAGCAA  700

seq1  ACCCAGAGCAACATGCCCAAGGGCTTAGAAAATTCTTCTATCAAAGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCAACATGCCCAAGGGCTTAGAAAATTCTTCTATCAAAGAAAT  750

seq1  ATATAAAGCACACTAATGAAGTATACAAGCTATCATAGAGATATATTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGCACACTAATGAAGTATACAAGCTATCATAGAGATATATTGGA  800

seq1  GAAGAGGCTAAAACTGCATTGGGAATGAAACACAAGGTCTTCAATGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCTAAAACTGCATTGGGAATGAAACACAAGGTCTTCAATGTGTT  850

seq1  TTACTAAAGAGACAGAAAATGAAATTTCCTGTACTATCCTGGAGTCTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAGAGACAGAAAATGAAATTTCCTGTACTATCCTGGAGTCTAAA  900

seq1  GAGCTCTGCATCAAACGGCTTAACCCTAGGGAAACCAATTTACATACCCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGCATCAAACGGCTTAACCCTAGGGAAACCAATTTACATACCCG  950

seq1  TTGTGAGTACTGCAGTTCTGAGTCCTAGACAAAGTAGGCAG-TTTTTCTG  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTGAGTACTGCAGTTCTGAGTCCTAGACAAAGTAGGCAGTTTTTTCTG  1000

seq1  CCTCGAGGTCTGAATATTTTCTGTCTCCACTGAAGACTTTATATGCCTCT  1049
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTCGAGGTCTGAATATTTTCTGTCT-CACTGAAGACTTTATATGCCTCT  1049

seq1  CTCTGTAACCTTCCCTATTGCA-CCCACACCCTTCAACCTCGAAGTAGAA  1098
      |||||||  | | |||||  || |||||||||||| | |||| |||||| 
seq2  CTCTGTA--CAT-CCTATGCCACCCCACACCCTTCCAACTCG-AGTAGAC  1095

seq1  TTGGATTAGATGGTTAAACTCCACCCTTTTAATTCTATATGTAAC-ATCC  1147
      | | || ||||||||  ||||||||   || | |||||||||||| ||||
seq2  TGGAATAAGATGGTT--ACTCCACC---TTCAGTCTATATGTAACAATCC  1140

seq1  AA  1149
      ||
seq2  AA  1142