BAC Information

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BAC

Clone NameB6Ng01-266F20
Chromosome5 (Build37)
Map Location 7,381,437 - 7,481,735
singlet/doubletdoublet
Overlap geneLOC242823
Upstream geneLOC100041208, EG435830, LOC100042651, 4921511H03Rik
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266F20.bB6Ng01-266F20.g
ACCGA069779GA069780
length1,1411,114
definitionB6Ng01-266F20.b B6Ng01-266F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,381,437 - 7,382,596)(7,480,620 - 7,481,735)
sequence
gaattcagcagcaggatggaaaaaagtaagaagaattgagctagataagc
taaactctggggataattacagagggatcagacagatttgatcaggcatc
atgacagttgtggaagaataactccaaagacttctagaattaaccacatc
cataatcattcttgttgaaattgtctataaagggctactgttttattttt
ttccatccttttttctcccatgacctaatacacgtgtatcttactatctt
gtaaattggaatagataaggcaaactaagttaacactaaaggctttttac
tacatccagcacagtgacgatactgtgagaaaagtattaaaatggagctt
ataaacagtcagtaggagtttgggaatattttatcattcttttcaagcat
aagggccaaagttctgatccaagaccccaagtcaccagcaagacatttta
gaaaatgaagatgattcctgggacttgatggcagacagcctcagtggaaa
aaattagcttcatgttcagtaagagactctgcctgaaaagaataaggcaa
ggtgatagaaaaaggacacaccagtcttctttgggcctacagtgcacaca
tagcctctctttttcacacatacacagagagagagagagagagagagaga
gagagagagagagagagagagagaagagaaagaaaagaaataaccaagta
tataagctgtatgactcaaagttagacagaacttatatagaatcatgtca
agtttctgacttttaatgagaagtctagaatatttaaattttaattcaaa
taatgattttcagaggacataacagtttggagccaatgaggatttacttc
atggctaacaaatgtattgattctttcataatatttcacttttgttacaa
aaatcattttattaaaagtaattctatgacctgaaagagttcacttattt
ccttaagagatattcacttggggcacatcttccatattacagtccctggc
acagggaaagtgcatttggggactgctattttgaataattatagactttt
tctgatccacatcatttgatatttatagattaattatatctgaagaaact
actatgctatgcattaaatgatctttgaaacatatagtcat

gaattctatttgcaaaatgattaagaatatggctgcatcttggtagcaat
gataagaggcaattttccatagacagtaaagcaaaagacctacggttaaa
ccacaagctagccatataaatatgaacacaaagagaggctagattaatga
atcatcaaattcataaaccagcaacccttacaaggttggtggcaagcaat
gtgggctagggctagtggccaacagcttagctaaggtcaatagctataga
ggaggaattcactcattaccagatggtaatctggtacttaggtgaatagc
acaggaaaaatgtgcaatcatcaccctggttgggccaagagaatacacat
agtgtagaactcaatagttggcttgacccatgataaacccagaacattag
ttaatatcgatagatattatccaagtcttggccaatttctccaatgtatc
ttgttaaagctcctagacaaacaattcagaggggccacctttttgaagat
gctctcacattactcatgaatcctaatgtttctgacaacccatttttgga
aacctccctcatgggagcactgcttgctttatttcaccagtaaatctcct
tactttaatatttatttctgtattaaaaacttcttttagaccagacatgg
agaaaaggaactgcaactagatgcccagaggacactaagccagtgacacc
tgagcttattgagctgcagccaatgaaccctcatggtaactgccaaggtg
tttcaggaggcatcaaggagaagctaaaactcaacaggtgatcttcctga
gagagttctgccatggagtgtctaagttaatgatggaattatatctctag
gcaaggctgataagaatttcattttaggaaaaatccctagtattaatatg
catttcctgtttatatatatatatatatatatatatatatatatatatat
atatatatacatacatatgtatatatataacatcactagctattaacaaa
cccttttgagagatttctgcagaacaacaaagatttaatatcttgtagtg
atactatatagatacttctttaattctagatgatacctataagaatttca
aaaggttatacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_7381437_7382596
seq2: B6Ng01-266F20.b_47_1187

seq1  GAATTCAGCAGCAGGATGGAAAAAAGTAAGAAGAATTGAGCTAGATAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGCAGGATGGAAAAAAGTAAGAAGAATTGAGCTAGATAAGC  50

seq1  TAAACTCTGGGGATAATTACAGAGGGATCAGACAGATTTGATCAGGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTGGGGATAATTACAGAGGGATCAGACAGATTTGATCAGGCATC  100

seq1  ATGACAGTTGTGGAAGAATAACTCCAAAGACTTCTAGAATTAACCACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTTGTGGAAGAATAACTCCAAAGACTTCTAGAATTAACCACATC  150

seq1  CATAATCATTCTTGTTGAAATTGTCTATAAAGGGCTACTGTTTTATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCATTCTTGTTGAAATTGTCTATAAAGGGCTACTGTTTTATTTTT  200

seq1  TTCCATCCTTTTTTCTCCCATGACCTAATACACGTGTATCTTACTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCTTTTTTCTCCCATGACCTAATACACGTGTATCTTACTATCTT  250

seq1  GTAAATTGGAATAGATAAGGCAAACTAAGTTAACACTAAAGGCTTTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGGAATAGATAAGGCAAACTAAGTTAACACTAAAGGCTTTTTAC  300

seq1  TACATCCAGCACAGTGACGATACTGTGAGAAAAGTATTAAAATGGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAGCACAGTGACGATACTGTGAGAAAAGTATTAAAATGGAGCTT  350

seq1  ATAAACAGTCAGTAGGAGTTTGGGAATATTTTATCATTCTTTTCAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGTCAGTAGGAGTTTGGGAATATTTTATCATTCTTTTCAAGCAT  400

seq1  AAGGGCCAAAGTTCTGATCCAAGACCCCAAGTCACCAGCAAGACATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCAAAGTTCTGATCCAAGACCCCAAGTCACCAGCAAGACATTTTA  450

seq1  GAAAATGAAGATGATTCCTGGGACTTGATGGCAGACAGCCTCAGTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAAGATGATTCCTGGGACTTGATGGCAGACAGCCTCAGTGGAAA  500

seq1  AAATTAGCTTCATGTTCAGTAAGAGACTCTGCCTGAAAAGAATAAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCTTCATGTTCAGTAAGAGACTCTGCCTGAAAAGAATAAGGCAA  550

seq1  GGTGATAGAAAAAGGACACACCAGTCTTCTTTGGGCCTACAGTGCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAGAAAAAGGACACACCAGTCTTCTTTGGGCCTACAGTGCACACA  600

seq1  TAGCCTCTCTTTTTCACACATACACAGAGAGAGAGAGAGAGAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTCTTTTTCACACATACACAGAGAGAGAGAGAGAGAGAGAGAGA  650

seq1  GAGAGAGAGAGAGAGAGAGAGAGAAGAGAAAGAAAAGAAATAACCAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAAGAGAAAGAAAAGAAATAACCAAGTA  700

seq1  TATAAGCTGTATGACTCAAAGTTAGACAGAACTTATATAGAATCATGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTGTATGACTCAAAGTTAGACAGAACTTATATAGAATCATGTCA  750

seq1  AGTTTCTGACTTTTAATGAGAAGTCTAGAATATTTAAATTTTAATTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGACTTTTAATGAGAAGTCTAGAATATTTAAATTTTAATTCAAA  800

seq1  TAATGATTTTCAGAGGACATAACAGTTTGGAGCCAATGAGGATTTACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTTCAGAGGACATAACAGTTTGGAGCCAATGAGGATTTACTTC  850

seq1  ATGGCTAACAAATGTATTGATTCTTTCATAATATTTCACTTTTGTTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAACAAATGTATTGATTCTTTCATAATATTTCACTTTTGTTACAA  900

seq1  AAATCATTTTATTAAAAGTAATTCTATGACCTGAAAGAGTTCACTTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTTATTAAAAGTAATTCTATGACCTGAAAGAGTTCACTTATTT  950

seq1  CCTTAAGAGAATATTCACTTGGGGCACATCTTCCATATTACAAGTCCCTG  1000
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CCTTAAGAG-ATATTCACTTGGGGCACATCTTCCATATTAC-AGTCCCTG  998

seq1  GCACAGGGAAAGTGCATTTGGGGACTGCTATTTTGAATAAATTATTAGAC  1050
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  GCACAGGGAAAGTGCATTTGGGGACTGCTATTTTGAAT-AATTA-TAGAC  1046

seq1  -TTTTCTGAATCCAACATCAATTTGAATATTTATAGGAATTAATATAATC  1099
       ||||||| |||| ||||| ||||| ||||||||||  ||||||   |||
seq2  TTTTTCTG-ATCC-ACATC-ATTTG-ATATTTATAG--ATTAATTATATC  1090

seq1  TGAAGGAAAACTACATAATGCTATGCAATTTAAAATGAATCTTTGGAAAA  1149
      |||||  |||||||   ||||||||||   | ||||| |||||||  |||
seq2  TGAAG--AAACTAC--TATGCTATGCA---TTAAATG-ATCTTTG--AAA  1130

seq1  CATATAGTCAT  1160
      |||||||||||
seq2  CATATAGTCAT  1141


seq1: chr5_7480620_7481735
seq2: B6Ng01-266F20.g_63_1176 (reverse)

seq1  CAAGTATAA-CTTTTGGAATTCTTATA-GTATCATCCTTAAGAATT-AAG  47
      ||||||||| |||||| |||||||||| ||||||||    |||||| |||
seq2  CAAGTATAACCTTTTGAAATTCTTATAGGTATCATC---TAGAATTAAAG  47

seq1  AAGTATCTATATAGTATCACTACAAGATATTAAATCTTTGTTGTTCTGCA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTATATAGTATCACTACAAGATATTAAATCTTTGTTGTTCTGCA  97

seq1  GAAATCTTCTCAAAAGGGTTTGTTAATAGCTAGTGATTGTTATATATATA  147
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAATC-TCTCAAAAGGGTTTGTTAATAGCTAGTGA-TGTTATATATATA  145

seq1  CATATGTATGTATATATATATATATATATATATATATATATATATATATA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATGTATATATATATATATATATATATATATATATATATATATA  195

seq1  TATATATAAACAGGAAATGCATATTAATACTAGGGATTTTTCCTAAAATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAACAGGAAATGCATATTAATACTAGGGATTTTTCCTAAAATG  245

seq1  AAATTCTTATCAGCCTTGCCTAGAGATATAATTCCATCATTAACTTAGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTATCAGCCTTGCCTAGAGATATAATTCCATCATTAACTTAGAC  295

seq1  ACTCCATGGCAGAACTCTCTCAGGAAGATCACCTGTTGAGTTTTAGCTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGGCAGAACTCTCTCAGGAAGATCACCTGTTGAGTTTTAGCTTC  345

seq1  TCCTTGATGCCTCCTGAAACACCTTGGCAGTTACCATGAGGGTTCATTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATGCCTCCTGAAACACCTTGGCAGTTACCATGAGGGTTCATTGG  395

seq1  CTGCAGCTCAATAAGCTCAGGTGTCACTGGCTTAGTGTCCTCTGGGCATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTCAATAAGCTCAGGTGTCACTGGCTTAGTGTCCTCTGGGCATC  445

seq1  TAGTTGCAGTTCCTTTTCTCCATGTCTGGTCTAAAAGAAGTTTTTAATAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCAGTTCCTTTTCTCCATGTCTGGTCTAAAAGAAGTTTTTAATAC  495

seq1  AGAAATAAATATTAAAGTAAGGAGATTTACTGGTGAAATAAAGCAAGCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAATATTAAAGTAAGGAGATTTACTGGTGAAATAAAGCAAGCAG  545

seq1  TGCTCCCATGAGGGAGGTTTCCAAAAATGGGTTGTCAGAAACATTAGGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCATGAGGGAGGTTTCCAAAAATGGGTTGTCAGAAACATTAGGAT  595

seq1  TCATGAGTAATGTGAGAGCATCTTCAAAAAGGTGGCCCCTCTGAATTGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTAATGTGAGAGCATCTTCAAAAAGGTGGCCCCTCTGAATTGTT  645

seq1  TGTCTAGGAGCTTTAACAAGATACATTGGAGAAATTGGCCAAGACTTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGGAGCTTTAACAAGATACATTGGAGAAATTGGCCAAGACTTGGA  695

seq1  TAATATCTATCGATATTAACTAATGTTCTGGGTTTATCATGGGTCAAGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTATCGATATTAACTAATGTTCTGGGTTTATCATGGGTCAAGCC  745

seq1  AACTATTGAGTTCTACACTATGTGTATTCTCTTGGCCCAACCAGGGTGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTGAGTTCTACACTATGTGTATTCTCTTGGCCCAACCAGGGTGAT  795

seq1  GATTGCACATTTTTCCTGTGCTATTCACCTAAGTACCAGATTACCATCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCACATTTTTCCTGTGCTATTCACCTAAGTACCAGATTACCATCTG  845

seq1  GTAATGAGTGAATTCCTCCTCTATAGCTATTGACCTTAGCTAAGCTGTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAGTGAATTCCTCCTCTATAGCTATTGACCTTAGCTAAGCTGTTG  895

seq1  GCCACTAGCCCTAGCCCACATTGCTTGCCACCAACCTTGTAAGGGTTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAGCCCTAGCCCACATTGCTTGCCACCAACCTTGTAAGGGTTGCT  945

seq1  GGTTTATGAATTTGATGATTCATTAATCTAGCCTCTCTTTGTGTTCATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGAATTTGATGATTCATTAATCTAGCCTCTCTTTGTGTTCATAT  995

seq1  TTATATGGCTAGCTTGTGGTTTAACCGTAGGTCTTTTGCTTTACTGTCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGCTAGCTTGTGGTTTAACCGTAGGTCTTTTGCTTTACTGTCTA  1045

seq1  TGGAAAATTGCCTCTTATCATTGCTACCAAGATGCAGCCATATTCTTAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATTGCCTCTTATCATTGCTACCAAGATGCAGCCATATTCTTAAT  1095

seq1  CATTTTGCAAATAGAATTC  1116
      |||||||||||||||||||
seq2  CATTTTGCAAATAGAATTC  1114


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