BAC Information

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BAC

Clone NameB6Ng01-266K18
Chromosome5 (Build37)
Map Location 10,435,094 - 10,436,230
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream gene9330182L06Rik, Grm3, LOC100042768, LOC625446, LOC435832, LOC381612
Downstream geneEG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266K18.bB6Ng01-266K18.g
ACCGA070011GA070012
length1,1231,207
definitionB6Ng01-266K18.b B6Ng01-266K18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggaattcaccctacttagtattcatagtattgctaatcacagagaaataa
tctttcagaggttgacaaagtaaagacaaataaaatggatggtcaaaaat
tagcatgaacttaaattgatctgttgatgttgatgtaaaaggactctata
actttagaacatgggatatcccatacaagattgattgatgctagccattt
actgtcttctacagacatcattttgctacatgtttgaggaagttttagtt
tattttctcctgacctggttagcttaattcagtatttaaattttatttat
ttattcattactttcttctttcaattcccccaaaggatcacaggtaggct
taactagaatgtccctaacaaaacatggctcttgttcctatttctgattc
agtttactgatgcttttgtataaacgtttatcatcttctgaaaatttgca
tttcataagtggtatttgtattacttattccataacttctctttataaac
ctacttgtgattttgatatttcacttagacttttgaatttacaagtcttg
catatcaatgtgtgtatttgtttgattgaccttacatctctgcttccaaa
aatttccaaaatataaaatattccttaaaatgacacactcttgatatata
tatatatatatatatatatatatatatatatggcttatttagtttataaa
gtagcttgtagtttagagaataatttcagtgcagtaagaaaataactgtt
ctgagcaaggaagcatataaaatcatcaaccatgagtatctgtgtatgaa
ttcagataagttgaagctactaaaaacatgtctccatattttagtgtagc
agttttcaaaagtattttatacacttctacagagattatttaaatatgta
ttgctaagctcataactgggtgactgggtccactctagaatttgtttcct
taagagtccccagagtggaatggcttcagcataagctctgagaaccctga
gtacagattgtatgtacgtttattactcttctactctatatcttttagat
aaacaggtcatgaacactactcactaatataccatttacacatacccagc
aggcttttctagttattagaaac
gaattctctgtttagatatttatcctattttaattagattatttggtttg
ttgatgtttagtttttgagttctttatatattttagatattagggttttt
ttctttttgtgaaatatagagttgatgaaactttttccatttggtagggt
gttgtagaaattatttaatcctgacccagggattttactttgcttttgac
catttagttcacatacacacacacacacacaccatttttatatttaaata
agccttaatcagcgctagagctgggccacacatctaccctgtatgctatc
agaatctacattcctattgataacctcaaattattatttattatttacta
catttcatctgggctattgctaattccaattggccatgatctcttgactc
accttaatcacagtgacttcttttttctcctgcaccttcttttcctgtgc
tctctttccatcccaagcccaggaatcctaaactccaactataacttctg
cccagctattggctgttggcatctttatttaccaatcagaaataacttgg
gggcagggtcacaggtctacatacagattccaggtcttaggggcgtacat
gtaacattgcaagagataagaccgtacctctacagtatggtgcaagtttg
tcctacttatgatgtcctttggcttacacaagttctcagtttcatgagat
tccattttttgtctatcttagtgcctgtactattggtgttcctattatat
aaatgacaaacgggctgacacagaaataagggaaacaacatccttcacaa
taaccatgaacaatattaaaaacaaaacaaaacaaaaaaacctttgagat
aactctaagcaagcgaaagacctatatggacatagtttcaaatctttgaa
gaaaaaaatgtcaaaatcaatctacagattcacacaatctccatcaaaat
tccaacacattcttcacatgtgaaaagagtaattctaagtttccatatgc
aagaacaaatattccagggatagcaaaaaacattcttaatatattagact
tcttgggaaattccaccatctttgactctcaagctgcattacagaagcaa
taactgtcatagcctttgttacagtgaccggccagtgaaccatgcattga
tggagaccgaaaaaaatacccaccacttataacaccttgagatatttgtg
tactcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10435094_10436230
seq2: B6Ng01-266K18.b_47_1168 (reverse)

seq1  GTTTCTAATAAACTAGAAAAAGCCTGGTGTGGTAATGTGT-AATGGTAAT  49
      ||||||||| |||||| ||||||||| || ||| |||||| |||||| ||
seq2  GTTTCTAAT-AACTAG-AAAAGCCTGCTG-GGT-ATGTGTAAATGGT-AT  45

seq1  ATTAAGTTGAGTTAAGTGTTCATGACCTTGTTTATCTAAAAGATATTAGA  99
      ||||   |||||  ||||||||||||| ||||||||||||||||| ||||
seq2  ATTA--GTGAGT--AGTGTTCATGACC-TGTTTATCTAAAAGATA-TAGA  89

seq1  GTTAGAGAGTTATAAACGTACATACAATCTGTTACTTCAGGGTTTCTCAG  149
      ||   ||||| |||||||||||||||||||| ||| |||||| |||||||
seq2  GTAGAAGAGTAATAAACGTACATACAATCTG-TAC-TCAGGG-TTCTCAG  136

seq1  AGCTTTATGCTGAAGCCATTCCACTCTGGGGACCTCTTAAGGAAACAAAT  199
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGC-TTATGCTGAAGCCATTCCACTCTGGGGA-CTCTTAAGGAAACAAAT  184

seq1  TCTAGAGTGGACCCAGTCACCCAGTTATGAGCTTAGCAATACATATTTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTGGACCCAGTCACCCAGTTATGAGCTTAGCAATACATATTTAA  234

seq1  ATAATCTCTGTAGAAGTGTATAAAATACTTTTGAAAACTGCTACACTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTGTAGAAGTGTATAAAATACTTTTGAAAACTGCTACACTAAA  284

seq1  ATATGGAGACATGTTTTTAGTAGCTTCAACTTATCTGAATTCATACACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGACATGTTTTTAGTAGCTTCAACTTATCTGAATTCATACACAG  334

seq1  ATACTCATGGTTGATGATTTTATATGCTTCCTTGCTCAGAACAGTTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATGGTTGATGATTTTATATGCTTCCTTGCTCAGAACAGTTATTT  384

seq1  TCTTACTGCACTGAAATTATTCTCTAAACTACAAGCTACTTTATAAACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGCACTGAAATTATTCTCTAAACTACAAGCTACTTTATAAACTA  434

seq1  AATAAGCCATATATATATATATATATATATATATATATATATATATCAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCATATATATATATATATATATATATATATATATATATATCAAG  484

seq1  AGTGTGTCATTTTAAGGAATATTTTATATTTTGGAAATTTTTGGAAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCATTTTAAGGAATATTTTATATTTTGGAAATTTTTGGAAGCAG  534

seq1  AGATGTAAGGTCAATCAAACAAATACACACATTGATATGCAAGACTTGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGGTCAATCAAACAAATACACACATTGATATGCAAGACTTGTA  584

seq1  AATTCAAAAGTCTAAGTGAAATATCAAAATCACAAGTAGGTTTATAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAAGTCTAAGTGAAATATCAAAATCACAAGTAGGTTTATAAAGA  634

seq1  GAAGTTATGGAATAAGTAATACAAATACCACTTATGAAATGCAAATTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATGGAATAAGTAATACAAATACCACTTATGAAATGCAAATTTTC  684

seq1  AGAAGATGATAAACGTTTATACAAAAGCATCAGTAAACTGAATCAGAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGATAAACGTTTATACAAAAGCATCAGTAAACTGAATCAGAAAT  734

seq1  AGGAACAAGAGCCATGTTTTGTTAGGGACATTCTAGTTAAGCCTACCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAGAGCCATGTTTTGTTAGGGACATTCTAGTTAAGCCTACCTGT  784

seq1  GATCCTTTGGGGGAATTGAAAGAAGAAAGTAATGAATAAATAAATAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTGGGGGAATTGAAAGAAGAAAGTAATGAATAAATAAATAAAAT  834

seq1  TTAAATACTGAATTAAGCTAACCAGGTCAGGAGAAAATAAACTAAAACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACTGAATTAAGCTAACCAGGTCAGGAGAAAATAAACTAAAACTT  884

seq1  CCTCAAACATGTAGCAAAATGATGTCTGTAGAAGACAGTAAATGGCTAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACATGTAGCAAAATGATGTCTGTAGAAGACAGTAAATGGCTAGC  934

seq1  ATCAATCAATCTTGTATGGGATATCCCATGTTCTAAAGTTATAGAGTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAATCTTGTATGGGATATCCCATGTTCTAAAGTTATAGAGTCCT  984

seq1  TTTACATCAACATCAACAGATCAATTTAAGTTCATGCTAATTTTTGACCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCAACATCAACAGATCAATTTAAGTTCATGCTAATTTTTGACCA  1034

seq1  TCCATTTTATTTGTCTTTACTTTGTCAACCTCTGAAAGATTATTTCTCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTATTTGTCTTTACTTTGTCAACCTCTGAAAGATTATTTCTCTG  1084

seq1  TGATTAGCAATACTATGAATACTAAGTAGGGTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGCAATACTATGAATACTAAGTAGGGTGAATTC  1122