BAC Information

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BAC

Clone NameB6Ng01-267L08
Chromosome5 (Build37)
Map Location 138,487,445 - 138,487,956
singlet/doubletsinglet
Overlap geneSmok3b
Upstream geneVgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a
Downstream geneSmok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267L08.bB6Ng01-267L08.g
ACCGA070758GA070759
length1,2141,004
definitionB6Ng01-267L08.b B6Ng01-267L08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagttgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccagtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
acttgccgagtcggtccgtaaatacggaaccaatgctaattttaccttgg
tgcagttagacaggctcgccggcatggcactaactcctgctgactggcaa
acgattgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agctctttggcatgaaactgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcaaacaaactaccattggggagcttatgccca
agtttcctccacggctattagggcctggaaggcgctctcccgagcaggtg
aaaccactggtcaattaacaaaagttgtccagggacctcaggagtccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
ttcagagcaagccgcgcctctggtagaacagctcatctatgagcaagcca
caaaggagtgccgagcggccatagccccaagaaagaacaaaaggcttaca
agactggctcaggtctgtcgagagcttgggggacctctcagcaatgcagg
tttagcggctgccatccttcaatcccaaaaccgctccatggcagaaaata
atcagaggacatgttttaactgcggaaagcctgggcattttaagaaagat
tgcagagctccagataaacaggaggactctcactctttgctctagtgtgg
ccagggtatcatagagcctgacaaggtcgctctgtgaaggaattatgggc
cgaatctccactgtatatgtccattcagcttatgtgcagatcggtccact
cggccctcttcggt
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaaaagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctctcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgttgccgcctcagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaagatggtgccgccccagaatctctgtgactctc
tcgcccgtcccagaaacggctggcactctgtattccacacggtcacccgt
gcagcctgccctccgcggagtcccggagccaagaaggctcccgccggcgc
ctgtgccacaaacctctcaggccaggcagacccccgtgctctcaccagga
aggtggccggctgtctggagctgaagatggcgccgcccagaagctctgcg
actctctcgcccgtcccagaaacggctggcactctgtattccacacggtc
acccgtgcagcctgccctccgcggagtcccggagccaagaaaggctcccg
ccggcgcctgtgccacaacctctcagccaggcagacccctgtgctctcac
caggaaggtgcccggctgtctggagctaaagatggcgccgcccctgtgat
taattttataacagacatcactgtacaactcgtgtataacgcctaagaac
agtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138487445_138487956
seq2: B6Ng01-267L08.g_495_1010

seq1  AGGTGGCCGGCCGTCTGGAGCCGAAGATGGCGCCGCCTCAGAAGCTCTGT  50
      |||||||| |  |||||||| ||||||||  |||||||||||||||||||
seq2  AGGTGGCCAGTTGTCTGGAGTCGAAGATGTTGCCGCCTCAGAAGCTCTGT  50

seq1  GGCTCTCGCCAGGAAGGTGGCTGGTTGTCTGGAGCCGAAGATGGCGCCGC  100
      |||||| ||| |||||||||||||||||||||||| |||||||| |||||
seq2  GGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGTGCCGC  100

seq1  CCCAGAAGCTCTGCGA--CTCTCGCCCGTCCCAGAAACGGCTGGC-CTCT  147
      ||||||| ||||| ||  ||||||||||||||||||||||||||| ||||
seq2  CCCAGAATCTCTGTGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCT  150

seq1  GTATTCCACACGGTCACCCGTGCAGCCTGCCCTCTGCGGAGTCCCGGAGC  197
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGC  200

seq1  CAAGAAGTCTCCCGCCGGCGCCTGTGACACAAACCTCTCAGGCCGGGCAG  247
      ||||||| |||||||||||||||||| ||||||||||||||||| |||||
seq2  CAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCAGGCAG  250

seq1  ACCCCTGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGCCGAAGATG  297
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  ACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATG  300

seq1  GCGTCGCCCCAGAAGCTCTGCGA--CTCTCATCCGTCCCAGAAACGGCTG  345
      ||| || ||||||||||||||||  |||||  ||||||||||||||||||
seq2  GCGCCG-CCCAGAAGCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTG  349

seq1  GC-CTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCTGCGGAGTC  394
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTC  399

seq1  CCGGAGCCAAG-AAGGCTCCCGCCGGCGCCTGTGACACAAACCTCTCAGG  443
      ||||||||||| |||||||||||||||||||||| ||| ||||||||| |
seq2  CCGGAGCCAAGAAAGGCTCCCGCCGGCGCCTGTGCCAC-AACCTCTCA-G  447

seq1  CCGGGCAGACCCCTGTGCTCTCACCAGGAAGGTGGCCAGCTGTCTGGAGC  493
      || ||||||||||||||||||||||||||||||| || ||||||||||||
seq2  CCAGGCAGACCCCTGTGCTCTCACCAGGAAGGTGCCCGGCTGTCTGGAGC  497

seq1  CGAAGATGGCGCCGCCCCT  512
        |||||||||||||||||
seq2  TAAAGATGGCGCCGCCCCT  516