BAC Information

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BAC

Clone NameB6Ng01-268C07
Chromosome5 (Build37)
Map Location 19,214,835 - 19,381,233
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268C07.bB6Ng01-268C07.g
ACCGA071080GA071081
length8741,163
definitionB6Ng01-268C07.b B6Ng01-268C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,214,835 - 19,215,706)(19,380,068 - 19,381,233)
sequence
gaattcagtgtatatattaagcctccctgccacttccaagagagaaagac
tactcacaagcagccttgattgcattttactgagggtttttaagggtgaa
gaacacagaaaaactatatcctgattggcagttccaggaggaagtaaacc
aagcaatcctttgaatagaagtcaaaaacatgcagttagctgtggcagtt
caacctggagctctagacccataggacttttcatggaagggtgcaaggtt
ggatggggatggggctcacttaggttaaaccaaagatggcttcagctgag
atatgatgaagggaacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtac
tcaaatattactatttaatttggtttagaaagccaaataaggttggtggc
cataccagacatctcataaacaaaaatggtgagtttcactgacagaatag
atctttgttcattattggttaatttatttatttacatttcaaatgttatt
cccccttcccagtttctcctcctcaaaactcctatccaatcccccctagc
ccctgcttctatgagggtacttcccaccccccaactcacccattcctgcc
tcagtgccctagcattcccctatgctggggcattgagccttcacaggaca
aagggccccttctcccattgatgccagacaaggccatcctctgctacata
tccagctggagccatgggtccctccaactctttggttggtggtttagtcc
ttgggagttctgaaagagtctggatggttgatattgttgttcttcctatg
gggtttatataccccttgagctccttcagtccttctcctatctccaccat
tgatgaaggaaacatttgccctga

gaattctcacagatgcatccgtgtttctttgcgcagtttttgtgtttggt
ggcaggcatttgtcagatgcttgggcggagtctcaaactcaaactgaagc
tacagaggaagttgaacctattgaacatgaatgtcatcctggtataaaag
gaactgagtttataggcggacgatgaggatgacatttcatagaaattatg
gaacacatttttgtcctacctaagaaattctgtgttttattgcttaataa
cctagtctcgaggtcctagagcctagacaatgtttaatcatattgagcat
attttgttggccaagaaacatgtatttatcattctgagtactttgataac
atttgaaaagtaagttaagagtcaagaataatattttcaaaacaaatttt
ctctcagcagcaaaaatcttcatgttttatttaggaacaaggaatttgta
aattgcctaacctgaaatataccaccctggattcaataatctgtgtataa
tggctggtccagcaaatctcctgagcacaactgaggtgaaggggctaaga
gagtgttgcagtgtcttcaaaactgcacataaaattgtacaggtaggttt
tgtttgttttgttgttgttgttccagaaaatgacccattttgatacttag
aagagaagctgaagccttgagaccatcatggactctgaaacctctactaa
tggtacgctgtctgtcaatcactcaacagatattgtatcattttgtttga
aaaatggaaaattttacttctgtaaactatataggaaccagagatgaaaa
gacaacaatggatttttgtttgattggtttttttccctgaaagttcttgg
agattattttacttaaacattctaaaagttgttcatcttctaacatttca
tatacaagttacaactgttcatgtataaagcaaggaatttgacatttttt
aaaacaaacttgattcatcaagcactaaaaaatatactactaattccatg
ggtttgagtctttaccaaaaaccttactcatttttttttgttcttatact
taaaaatatttgttattgaattttaaaatatttattttattctcatgtgt
gaaattttttcgacggtaggtatgtgttaccacttaccgggcaggggtgc
ggaataagagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19214835_19215706
seq2: B6Ng01-268C07.b_45_918

seq1  GAATTCAGTGTATATATTAAGCCTCCCTGCCACTTCCAAGAGAGAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTATATATTAAGCCTCCCTGCCACTTCCAAGAGAGAAAGAC  50

seq1  TACTCACAAGCAGCCTTGATTGCATTTTACTGAGGGTTTTTAAGGGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACAAGCAGCCTTGATTGCATTTTACTGAGGGTTTTTAAGGGTGAA  100

seq1  GAACACAGAAAAACTATATCCTGATTGGCAGTTCCAGGAGGAAGTAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGAAAAACTATATCCTGATTGGCAGTTCCAGGAGGAAGTAAACC  150

seq1  AAGCAATCCTTTGAATAGAAGTCAAAAACATGCAGTTAGCTGTGGCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCCTTTGAATAGAAGTCAAAAACATGCAGTTAGCTGTGGCAGTT  200

seq1  CAACCTGGAGCTCTAGACCCATAGGACTTTTCATGGAAGGGTGCAAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGAGCTCTAGACCCATAGGACTTTTCATGGAAGGGTGCAAGGTT  250

seq1  GGATGGGGATGGGGCTCACTTAGGTTAAACCAAAGATGGCTTCAGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGATGGGGCTCACTTAGGTTAAACCAAAGATGGCTTCAGCTGAG  300

seq1  ATATGATGAAGGGAACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGAAGGGAACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAC  350

seq1  TCAAATATTACTATTTAATTTGGTTTAGAAAGCCAAATAAGGTTGGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTACTATTTAATTTGGTTTAGAAAGCCAAATAAGGTTGGTGGC  400

seq1  CATACCAGACATCTCATAAACAAAAATGGTGAGTTTCACTGACAGAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAGACATCTCATAAACAAAAATGGTGAGTTTCACTGACAGAATAG  450

seq1  ATCTTTGTTCATTATTGGTTAATTTATTTATTTACATTTCAAATGTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTTCATTATTGGTTAATTTATTTATTTACATTTCAAATGTTATT  500

seq1  CCCCCTTCCCAGTTTCTCCTCCTCAAAACTCCTATCCAATCCCCCCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCCCAGTTTCTCCTCCTCAAAACTCCTATCCAATCCCCCCTAGC  550

seq1  CCCTGCTTCTATGAGGGTACTTCCCACCCCCCAACTCACCCATTCCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTCTATGAGGGTACTTCCCACCCCCCAACTCACCCATTCCTGCC  600

seq1  TCAGTGCCCTAGCATTCCCCTATGCTGGGGCATTGAGCCTTCACAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCCTAGCATTCCCCTATGCTGGGGCATTGAGCCTTCACAGGACA  650

seq1  AAGGGCCCCTTCTCCCATTGATGCCAGACAAGGCCATCCTCTGCTACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCCCTTCTCCCATTGATGCCAGACAAGGCCATCCTCTGCTACATA  700

seq1  TCCAGCTGGAGCCATGGGTCCCTCCAACTCTTTGGTTGGTGGTTTAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGGAGCCATGGGTCCCTCCAACTCTTTGGTTGGTGGTTTAGTCC  750

seq1  TTGGGAGTTCTGAAAGAGTCTGGATGGTTGATATTGTTGTTCTTCCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTTCTGAAAGAGTCTGGATGGTTGATATTGTTGTTCTTCCTATG  800

seq1  GGG-TTATATACCCCTTGAGCTCCTTCAGTCCTTCTCCTATCTCCACCAT  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTATATACCCCTTGAGCTCCTTCAGTCCTTCTCCTATCTCCACCAT  850

seq1  TGATGAAGGAAACA-TTGCCCTGA  872
      |||||||||||||| |||||||||
seq2  TGATGAAGGAAACATTTGCCCTGA  874


seq1: chr5_19380068_19381233
seq2: B6Ng01-268C07.g_65_1227 (reverse)

seq1  GGACTCT--ATCCGCA--CCTTCCGCGTAAGTGGT-ACACATACTTACTG  45
      |||||||   ||||||  ||| ||  ||||||||| |||||||| ||| |
seq2  GGACTCTTATTCCGCACCCCTGCCCGGTAAGTGGTAACACATACCTACCG  50

seq1  TCAGAAAAATATTCACACATGAGAAATAAAAATAAATA-TTTAAAATTCA  94
      || ||||||  ||||||||||||||   |||||||||| |||||||||| 
seq2  TC-GAAAAAATTTCACACATGAGAA--TAAAATAAATATTTTAAAATTC-  96

seq1  AAATAACAAAATATTTTAAAGTATAAGAACAAAAAAAAATTGAGTAAGGT  144
       |||||| ||||||||| ||||||||||||||||||||| ||||||||||
seq2  -AATAAC-AAATATTTTTAAGTATAAGAACAAAAAAAAA-TGAGTAAGGT  143

seq1  TTTTGGTAAAGACTCAAAACCATTGAATTAGTAGTATATTTTTTAGTGCT  194
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TTTTGGTAAAGACTCAAACCCATGGAATTAGTAGTATATTTTTTAGTGCT  193

seq1  TGATGAATTCAAGTTTGTTTTTAAAAAATGTCAAATTCCTTGCTTTATAC  244
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  TGATGAA-TCAAGTTTG-TTTTAAAAAATGTCAAATTCCTTGCTTTATAC  241

seq1  ATGAACAGTTGTAACTTGTATATGAAATGTTAGAAGATGAACAACTTTTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGTTGTAACTTGTATATGAAATGTTAGAAGATGAACAACTTTTA  291

seq1  GAATGTTTAAGTAAAATAATCTCCAAGAACTTTCAGGGAAAAAAACCAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTAAGTAAAATAATCTCCAAGAACTTTCAGGGAAAAAAACCAAT  341

seq1  CAAACAAAAATCCATTGTTGTCTTTTCATCTCTGGTTCCTATATAGTTTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAATCCATTGTTGTCTTTTCATCTCTGGTTCCTATATAGTTTA  391

seq1  CAGAAGTAAAATTTTCCATTTTTCAAACAAAATGATACAATATCTGTTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAAAATTTTCCATTTTTCAAACAAAATGATACAATATCTGTTGA  441

seq1  GTGATTGACAGACAGCGTACCATTAGTAGAGGTTTCAGAGTCCATGATGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGACAGACAGCGTACCATTAGTAGAGGTTTCAGAGTCCATGATGG  491

seq1  TCTCAAGGCTTCAGCTTCTCTTCTAAGTATCAAAATGGGTCATTTTCTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGCTTCAGCTTCTCTTCTAAGTATCAAAATGGGTCATTTTCTGG  541

seq1  AACAACAACAACAAAACAAACAAAACCTACCTGTACAATTTTATGTGCAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAAAACAAACAAAACCTACCTGTACAATTTTATGTGCAG  591

seq1  TTTTGAAGACACTGCAACACTCTCTTAGCCCCTTCACCTCAGTTGTGCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGACACTGCAACACTCTCTTAGCCCCTTCACCTCAGTTGTGCTC  641

seq1  AGGAGATTTGCTGGACCAGCCATTATACACAGATTATTGAATCCAGGGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTTGCTGGACCAGCCATTATACACAGATTATTGAATCCAGGGTG  691

seq1  GTATATTTCAGGTTAGGCAATTTACAAATTCCTTGTTCCTAAATAAAACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTCAGGTTAGGCAATTTACAAATTCCTTGTTCCTAAATAAAACA  741

seq1  TGAAGATTTTTGCTGCTGAGAGAAAATTTGTTTTGAAAATATTATTCTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTTTTGCTGCTGAGAGAAAATTTGTTTTGAAAATATTATTCTTG  791

seq1  ACTCTTAACTTACTTTTCAAATGTTATCAAAGTACTCAGAATGATAAATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAACTTACTTTTCAAATGTTATCAAAGTACTCAGAATGATAAATA  841

seq1  CATGTTTCTTGGCCAACAAAATATGCTCAATATGATTAAACATTGTCTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCTTGGCCAACAAAATATGCTCAATATGATTAAACATTGTCTAG  891

seq1  GCTCTAGGACCTCGAGACTAGGTTATTAAGCAATAAAACACAGAATTTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGACCTCGAGACTAGGTTATTAAGCAATAAAACACAGAATTTCT  941

seq1  TAGGTAGGACAAAAATGTGTTCCATAATTTCTATGAAATGTCATCCTCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGACAAAAATGTGTTCCATAATTTCTATGAAATGTCATCCTCAT  991

seq1  CGTCCGCCTATAAACTCAGTTCCTTTTATACCAGGATGACATTCATGTTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCGCCTATAAACTCAGTTCCTTTTATACCAGGATGACATTCATGTTC  1041

seq1  AATAGGTTCAACTTCCTCTGTAGCTTCAGTTTGAGTTTGAGACTCCGCCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTCAACTTCCTCTGTAGCTTCAGTTTGAGTTTGAGACTCCGCCC  1091

seq1  AAGCATCTGACAAATGCCTGCCACCAAACACAAAAACTGCGCAAAGAAAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTGACAAATGCCTGCCACCAAACACAAAAACTGCGCAAAGAAAC  1141

seq1  ACGGATGCATCTGTGAGAATTC  1166
      ||||||||||||||||||||||
seq2  ACGGATGCATCTGTGAGAATTC  1163


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