BAC Information

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BAC

Clone NameB6Ng01-268D21
Chromosome5 (Build37)
Map Location 58,313,908 - 58,453,452
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268D21.bB6Ng01-268D21.g
ACCGA071151GA071152
length1,1701,132
definitionB6Ng01-268D21.b B6Ng01-268D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,313,908 - 58,315,096)(58,452,314 - 58,453,452)
sequence
gaattcttccacttagtacctttatcaatactgggttctaacagaattca
atttctctaattagagatcatttttattcctccttaggctttcatctctt
aaggtcatggtcctcaaccatcccaatgcttcctactaactttttaatac
agttgcttatgttgtggtgacactcaaccataaaaattttcattgttaac
tcataaataattttgctacacttataaattgtaatttaaatatctactgt
gcagtatatctggtatatcaacccaaagagaacccatagtttgagaacaa
cttcacaaccctaagggatttacatagtatttctttaaaattacaaatgt
tctcaacattaccttcaggaacttatgtataataaaaccatataacttaa
tacaccttgctatattcagtcaactgtcttttcagtaccttactactcaa
gaataatactttactgatttatctgcccaggcgatgctgctattcccatt
ataaagacctatctcttaggttggtaaatagttgacccataagcataact
ctggtttttacctgtaacaaaatgccttcaatttatcaaattgaagaaaa
ttggttccagaggccccatctttctcttcacatcaactgaagcactgcta
aggatacatcacctttgaacaagtggcaggaagcagcatgttcactccca
agcatatttttatcagagatcttcccattcagctcgctgccctttatgcg
atgtgatcaattgcattcagccttcaccatttctctgaaaattcaatttt
gagagcctctgctagtttcctggacaacctgggttcatctctttcttcaa
gaataatgaagatctgaaatttaattctagccgatttcaggccttgcctg
tttctatcttctcttttgaaatcaagtccatgtgcttttcttttgcagcc
cctgtctcagtgttctgagtgtccctaggatcaagaaccattaattagtt
ctatcattgtccatgggtcacagatatcagtgtatttttcttcagtgtac
tatttggttatagtgcaaagaaaaaccacactctgagtagattatctgct
ttgtatttcagtttttttttttaggtgaaaatatactgtttagagtatga
aaggccctgaattcatctga

gaattctttgtgctaggatttactttatatgtctgtgtatatatgtatat
atgtttacatatatataaatatacatgtgtgtacatacacatataaatac
acacatggatatacatatatacatacacacacacacacacacatggtctt
gtgtatgtactcaaatatatgagtatgtgattacatgacaaatacaattc
ctggacattttccttgccttcaatttgtctcagtgtttttaaagcagtaa
tttgtagggttgatgttatttctttttttatttatcactcttttttatat
tccatcttatctttttagaataatcttatgttcacagcaaagtcttaagg
aaggtatagataagcaacaagtgttctgtgatcctagtctaggaatcctg
tcctccactatcttattttttctgagttaattacttcaacagaaagaaag
gaaataacaatgagttccacacatttaaaagttaaaaaaaaaaactcaaa
aaagtctcattttcctgaaagatagagccatcacatttgtgatttttctt
cttctttagtttctctttgaatgtggactgcattaaatgataagttgtca
tggacaaggtgcatataataaactctattgtaaaactatgcactcttttg
aaaaagggataatgctataaatatcccatctggatcttcaactcagagcc
ctgggtcactgtcctgagtctggaatcatagaaatgcagacccatgttct
gtttacagtgatggcttacagagtagatagtgagtacaagaaaaaaaatg
gtactagtgcaatcttgaaatttaatatattatttctttaagaatgggag
gcatttttgtcacatatacactttgatttatttgtttattgtgtgaattt
tatccatttaacaatgagatgacctttgattgtcaatattttgtttgatc
tagaagtaattttctaagatccccagagatttttgtttgcctgttgatta
gttgtttataaacgtcctttaaactcaaagatgactaatatactgctatt
acattcttatgcacaccctgcttctacttatttttatgtttcatattctt
tggatagcgccttgttagactttctcagtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58313908_58315096
seq2: B6Ng01-268D21.b_45_1214

seq1  GAATTCTTCCACTTAGTACCTTTATCAATACTGGGTTCTAACAGAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCACTTAGTACCTTTATCAATACTGGGTTCTAACAGAATTCA  50

seq1  ATTTCTCTAATTAGAGATCATTTTTATTCCTCCTTAGGCTTTCATCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTAATTAGAGATCATTTTTATTCCTCCTTAGGCTTTCATCTCTT  100

seq1  AAGGTCATGGTCCTCAACCATCCCAATGCTTCCTACTAACTTTTTAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATGGTCCTCAACCATCCCAATGCTTCCTACTAACTTTTTAATAC  150

seq1  AGTTGCTTATGTTGTGGTGACACTCAACCATAAAAATTTTCATTGTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTATGTTGTGGTGACACTCAACCATAAAAATTTTCATTGTTAAC  200

seq1  TCATAAATAATTTTGCTACACTTATAAATTGTAATTTAAATATCTACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATAATTTTGCTACACTTATAAATTGTAATTTAAATATCTACTGT  250

seq1  GCAGTATATCTGGTATATCAACCCAAAGAGAACCCATAGTTTGAGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATATCTGGTATATCAACCCAAAGAGAACCCATAGTTTGAGAACAA  300

seq1  CTTCACAACCCTAAGGGATTTACATAGTATTTCTTTAAAATTACAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAACCCTAAGGGATTTACATAGTATTTCTTTAAAATTACAAATGT  350

seq1  TCTCAACATTACCTTCAGGAACTTATGTATAATAAAACCATATAACTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACATTACCTTCAGGAACTTATGTATAATAAAACCATATAACTTAA  400

seq1  TACACCTTGCTATATTCAGTCAACTGTCTTTTCAGTACCTTACTACTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTGCTATATTCAGTCAACTGTCTTTTCAGTACCTTACTACTCAA  450

seq1  GAATAATACTTTACTGATTTATCTGCCCAGGCGATGCTGCTATTCCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATACTTTACTGATTTATCTGCCCAGGCGATGCTGCTATTCCCATT  500

seq1  ATAAAGACCTATCTCTTAGGTTGGTAAATAGTTGACCCATAAGCATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACCTATCTCTTAGGTTGGTAAATAGTTGACCCATAAGCATAACT  550

seq1  CTGGTTTTTACCTGTAACAAAATGCCTTCAATTTATCAAATTGAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTTACCTGTAACAAAATGCCTTCAATTTATCAAATTGAAGAAAA  600

seq1  TTGGTTCCAGAGGCCCCATCTTTCTCTTCACATCAACTGAAGCACTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCAGAGGCCCCATCTTTCTCTTCACATCAACTGAAGCACTGCTA  650

seq1  AGGATACATCACCTTTGAACAAGTGGCAGGAAGCAGCATGTTCACTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACATCACCTTTGAACAAGTGGCAGGAAGCAGCATGTTCACTCCCA  700

seq1  AGCATATTTTTATCAGAGATCTTCCCATTCAGCTCGCTGCCCTTTATGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTTTTATCAGAGATCTTCCCATTCAGCTCGCTGCCCTTTATGCG  750

seq1  ATGTGATCAATTGCATTCAGCCTTCACCATTTCTCTGAAAATTCAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATCAATTGCATTCAGCCTTCACCATTTCTCTGAAAATTCAATTTT  800

seq1  GAGAGCCTCTGCTAGTTTCCTGGACAACCTGGGTTCATCTCTTTCTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTCTGCTAGTTTCCTGGACAACCTGGGTTCATCTCTTTCTTCAA  850

seq1  GAATAATGAAGATCTGAAATTTAATTCTAGCCGATTTCAGGCCTTGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGAAGATCTGAAATTTAATTCTAGCCGATTTCAGGCCTTGCCTG  900

seq1  TTTCTATCTTCTCTTTTGAAATCAAGTCCATGTGCTTTTCTTTTGCAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTTCTCTTTTGAAATCAAGTCCATGTGCTTTTCTTTTGCAGCC  950

seq1  CCTGTCTCAGTGTTCTGAGTGTCCCTAGGATCAAGAAACCATTAAATTAG  1000
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  CCTGTCTCAGTGTTCTGAGTGTCCCTAGGATCAAG-AACCATT-AATTAG  998

seq1  TTCTATCAATTGTCCCATGGGTTCACAGATATTCAGGTGTA-TTTTCTTC  1049
      ||||||| ||||| ||||||| ||||||||| ||| ||||| ||||||||
seq2  TTCTATC-ATTGT-CCATGGG-TCACAGATA-TCA-GTGTATTTTTCTTC  1043

seq1  AGTGGCCACTATTTTGTTATAGTGCAAAGAAAACACAACTCT-TGAGTAG  1098
      ||||   ||||||| |||||||||||||||||| || || || |||||||
seq2  AGTG--TACTATTTGGTTATAGTGCAAAGAAAA-ACCACACTCTGAGTAG  1090

seq1  ATTATTCTGCTTTTGGTATTTTCAAGTTTTTTTTTTTAAGGTGAAATATA  1148
      |||| ||||||||  ||||||   ||||||||||||| |||||||| |||
seq2  ATTA-TCTGCTTT--GTATTT--CAGTTTTTTTTTTT-AGGTGAAA-ATA  1133

seq1  TTACTGGTTTTAGAGTAATGAAAGGCCCTAGATTCATCTGA  1189
       |||||  |||||||| ||||||||||||  ||||||||||
seq2  -TACTG--TTTAGAGT-ATGAAAGGCCCTGAATTCATCTGA  1170


seq1: chr5_58452314_58453452
seq2: B6Ng01-268D21.g_64_1195 (reverse)

seq1  GTCACTGGAGAAAATCTTAACAAGGCGCTAT-CAAAGAATATG-AACATA  48
      |||||| |||||| || |||||||||||||| ||||||||||| ||||| 
seq2  GTCACT-GAGAAAGTC-TAACAAGGCGCTATCCAAAGAATATGAAACAT-  47

seq1  AAAAATAAGTAAGAAGCAGGGTGTGCATAAGATGTTAATAGCAGTATATT  98
      |||||||||| |||||||||||||||||||||   |||||||||||||||
seq2  AAAAATAAGT-AGAAGCAGGGTGTGCATAAGAATGTAATAGCAGTATATT  96

seq1  AGTTCATTCTTTGAGTTTAAAGGACGTTTATAAAACAACTAATTCAACAG  148
      || ||| |||||||||||||||||||||||| |||||||||| |||||||
seq2  AG-TCA-TCTTTGAGTTTAAAGGACGTTTAT-AAACAACTAA-TCAACAG  142

seq1  GCAAACAAAAATCTCTGGGGATTCTTAGAAAATTACTTCTAGATCAAACA  198
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAAACAAAAATCTCTGGGGA-TCTTAGAAAATTACTTCTAGATCAAACA  191

seq1  AAATATTGACAATCAAAGGTCATCTCATTGTTAAATGGATAAAATTCACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGACAATCAAAGGTCATCTCATTGTTAAATGGATAAAATTCACA  241

seq1  CAATAAACAAATAAATCAAAGTGTATATGTGACAAAAATGCCTCCCATTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACAAATAAATCAAAGTGTATATGTGACAAAAATGCCTCCCATTC  291

seq1  TTAAAGAAATAATATATTAAATTTCAAGATTGCACTAGTACCATTTTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAATAATATATTAAATTTCAAGATTGCACTAGTACCATTTTTTT  341

seq1  TCTTGTACTCACTATCTACTCTGTAAGCCATCACTGTAAACAGAACATGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTACTCACTATCTACTCTGTAAGCCATCACTGTAAACAGAACATGG  391

seq1  GTCTGCATTTCTATGATTCCAGACTCAGGACAGTGACCCAGGGCTCTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATTTCTATGATTCCAGACTCAGGACAGTGACCCAGGGCTCTGAG  441

seq1  TTGAAGATCCAGATGGGATATTTATAGCATTATCCCTTTTTCAAAAGAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATCCAGATGGGATATTTATAGCATTATCCCTTTTTCAAAAGAGT  491

seq1  GCATAGTTTTACAATAGAGTTTATTATATGCACCTTGTCCATGACAACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTTTTACAATAGAGTTTATTATATGCACCTTGTCCATGACAACTT  541

seq1  ATCATTTAATGCAGTCCACATTCAAAGAGAAACTAAAGAAGAAGAAAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAATGCAGTCCACATTCAAAGAGAAACTAAAGAAGAAGAAAAAT  591

seq1  CACAAATGTGATGGCTCTATCTTTCAGGAAAATGAGACTTTTTTGAGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTGATGGCTCTATCTTTCAGGAAAATGAGACTTTTTTGAGTTT  641

seq1  TTTTTTTTAACTTTTAAATGTGTGGAACTCATTGTTATTTCCTTTCTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAACTTTTAAATGTGTGGAACTCATTGTTATTTCCTTTCTTTC  691

seq1  TGTTGAAGTAATTAACTCAGAAAAAATAAGATAGTGGAGGACAGGATTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGTAATTAACTCAGAAAAAATAAGATAGTGGAGGACAGGATTCC  741

seq1  TAGACTAGGATCACAGAACACTTGTTGCTTATCTATACCTTCCTTAAGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGGATCACAGAACACTTGTTGCTTATCTATACCTTCCTTAAGAC  791

seq1  TTTGCTGTGAACATAAGATTATTCTAAAAAGATAAGATGGAATATAAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGAACATAAGATTATTCTAAAAAGATAAGATGGAATATAAAAA  841

seq1  AGAGTGATAAATAAAAAAAGAAATAACATCAACCCTACAAATTACTGCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATAAATAAAAAAAGAAATAACATCAACCCTACAAATTACTGCTT  891

seq1  TAAAAACACTGAGACAAATTGAAGGCAAGGAAAATGTCCAGGAATTGTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACACTGAGACAAATTGAAGGCAAGGAAAATGTCCAGGAATTGTAT  941

seq1  TTGTCATGTAATCACATACTCATATATTTGAGTACATACACAAGACCATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGTAATCACATACTCATATATTTGAGTACATACACAAGACCATG  991

seq1  TGTGTGTGTGTGTGTGTATGTATATATGTATATCCATGTGTGTATTTATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTATGTATATATGTATATCCATGTGTGTATTTATA  1041

seq1  TGTGTATGTACACACATGTATATTTATATATATGTAAACATATATACATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTACACACATGTATATTTATATATATGTAAACATATATACATA  1091

seq1  TATACACAGACATATAAAGTAAATCCTAGCACAAAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAGACATATAAAGTAAATCCTAGCACAAAGAATTC  1132


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