BAC Information

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BAC

Clone NameB6Ng01-268E21
Chromosome5 (Build37)
Map Location 81,255,823 - 81,256,967
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268E21.bB6Ng01-268E21.g
ACCGA071199GA071200
length1,1371,161
definitionB6Ng01-268E21.b B6Ng01-268E21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctttgttgatatatttccatctcaaactgaaggctagtggggca
tggcaaacaagggttagtttatatcacctttgtagaaaacaagtgtttct
tgtcttggtgtcatcttttatcatctattcagacttttctaccttaagtc
aaatgtggaaatttactgtagcaataaaacaaagggtcttagcatacaag
gatgcagaattgatagaatacctgatttttagtatattcttctaggtcat
tgtgctcctgatgataagtgacatgaagtgagaatcactgtttactgtgt
aatatttctaaacagtgaaacatggggacattcttgctgtcacttttctg
tctttcactacaacctttgttttcattcagatctttaagaaattaatgtg
ccttccattgttaaactggaaaaaatcttagactaggttttttgatatgt
taagtagataacttgttttagttctaaaaatatatttcagtcacatgtaa
aacctgaagctccaggaaggaagggtagaaaataaactgtaggatagcct
cttaggtgatttctgattaagatgcttttcacccaggcttaggaccagtg
ataagcaagtcggacttaatgaagttaaaaatctttctgtactgagaagg
tatctgacatatgactactatctagaaaatataaagagttaaaaaataaa
tataaaaaacaagcaatcaccaagaaacaaacaatacaattaaaatgagc
tagggaaataggtgttacaagaagatatacaactggttaaaaaatacttt
gaaaagtgtttaccattcttagctattaggaaaacacaaattaaacttag
ctcgagattttaatttacctcagcagaatggcaaaccaaatgacaactga
cagcagagactgcagcagtgtagggaaataggagtcctgtttgtgggagt
gcaaatttatgaagctactatgttcgtgtaaaagtgttaaatcagagttg
ccttagataggggataacgttcatccaaaagcaatgttttgccaacaaat
ctccgtgaaggcgtgggaatatctccctcatgatgttagagttttcctgg
agaatcctccaataaggtaggtgtgtgtgctcttggt

gaattctcacctgaggaatgccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctctcaccagtcagaatggctaagatcaaaaattcaattgacagc
agatgctgggaggatgtggaaaaaaaggagcactcctccattgttggttg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaagttggacatagtagtaccggaggatccagcaataccactcctgggca
tatatccagaagatgccccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaaa
gaactcacacaatatatactcactgataagtggctattagcccagagact
tagaatacccaagatataagatacaatttgcgaaacacatgaaactcaag
aagaacaaagaccaaagtgtggacactttaccccttcttagaattgggaa
caaaacaccaatggaaggacttacagaaacacagtttggagctgagatga
aaggatggaccatcttgagactgccatatccagggatcattcccaaaatc
agcctccaaaggctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatattgctgtctcttgtgagactatgccagggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacagtgccccaa
tggaggagctagagaaagtaaccaagagataaattatgtgtatcctatag
tgacacaatatgaactacccagtaccccagagctcgtgctctagctgcct
tatgtatcagatgattgcctagtgccatcagtggaagtgaggtccattgt
gtgccaacctatctgctcagtacaggtatgccagtgccaggaagtgggaa
tgtgatgtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81255823_81256967
seq2: B6Ng01-268E21.b_46_1182 (reverse)

seq1  ACCAAGAGCAACAACAACAACTTACATAATTTGGAGGA-TCTCCAGGAAA  49
      |||||||||    |||   || ||| | | |||||||| |||||||||||
seq2  ACCAAGAGC----ACACACACCTACCTTA-TTGGAGGATTCTCCAGGAAA  45

seq1  ACTCTAACAATCATGA-GGAGATA-TCCCACGCCTTCACGGAGATTTGTT  97
      |||||||| ||||||| ||||||| ||||||||||||||||||||||| |
seq2  ACTCTAAC-ATCATGAGGGAGATATTCCCACGCCTTCACGGAGATTTG-T  93

seq1  TGGCAAAACATTGCTTTTTGGATGAACGTTATCCCCTATCTAAGGCAACT  147
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGCAAAACATTGC-TTTTGGATGAACGTTATCCCCTATCTAAGGCAACT  142

seq1  CTGATTTAACACTTTTACACGAACATAGTAGCTTCATAAATTTGCACTCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTAACACTTTTACACGAACATAGTAGCTTCATAAATTTGCACTCC  192

seq1  CACAAACAGGACTCCTATTTCCCTACACCTGCTGCAGTCTCTGCTGTCAG  247
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACAAACAGGACTCCTATTTCCCTACA-CTGCTGCAGTCTCTGCTGTCAG  241

seq1  TTGTCATTTGGTTTGCCATTCTGCCTGAGGTAAATTAAAATCTCGAGCTA  297
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGTCATTTGGTTTGCCATTCTG-CTGAGGTAAATTAAAATCTCGAGCTA  290

seq1  AGTTTAATTTGTGTTTTCCTAATAGCTAAGAATGGTAAACACTTTTCAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATTTGTGTTTTCCTAATAGCTAAGAATGGTAAACACTTTTCAAA  340

seq1  GTATTTTTTAACCAGTTGTATATCTTCTTGTAACACCTATTTCCCTAGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTAACCAGTTGTATATCTTCTTGTAACACCTATTTCCCTAGCT  390

seq1  CATTTTAATTGTATTGTTTGTTTTCTTGGTGATTGCTTGTTTTTTATATT  447
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATTTTAATTGTATTGTTTG-TTTCTTGGTGATTGCTTGTTTTTTATATT  439

seq1  TATTTTTTAACTCTTTATATTTTCTAGATAGTAGTCATATGTCAGATACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAACTCTTTATATTTTCTAGATAGTAGTCATATGTCAGATACC  489

seq1  TTCTCAGTACAGAAAGATTTTTAACTTCATTAAGTCCGACTTGCTTATCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTACAGAAAGATTTTTAACTTCATTAAGTCCGACTTGCTTATCA  539

seq1  CTGGTCCTAAGCCTGGGTGAAAAGCATCTTAATCAGAAATCACCTAAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTAAGCCTGGGTGAAAAGCATCTTAATCAGAAATCACCTAAGAG  589

seq1  GCTATCCTACAGTTTATTTTCTACCCTTCCTTCCTGGAGCTTCAGGTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTACAGTTTATTTTCTACCCTTCCTTCCTGGAGCTTCAGGTTTT  639

seq1  ACATGTGACTGAAATATATTTTTAGAACTAAAACAAGTTATCTACTTAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGACTGAAATATATTTTTAGAACTAAAACAAGTTATCTACTTAAC  689

seq1  ATATCAAAAAACCTAGTCTAAGATTTTTTCCAGTTTAACAATGGAAGGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAAAACCTAGTCTAAGATTTTTTCCAGTTTAACAATGGAAGGCA  739

seq1  CATTAATTTCTTAAAGATCTGAATGAAAACAAAGGTTGTAGTGAAAGACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTCTTAAAGATCTGAATGAAAACAAAGGTTGTAGTGAAAGACA  789

seq1  GAAAAGTGACAGCAAGAATGTCCCCATGTTTCACTGTTTAGAAATATTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGACAGCAAGAATGTCCCCATGTTTCACTGTTTAGAAATATTAC  839

seq1  ACAGTAAACAGTGATTCTCACTTCATGTCACTTATCATCAGGAGCACAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAACAGTGATTCTCACTTCATGTCACTTATCATCAGGAGCACAAT  889

seq1  GACCTAGAAGAATATACTAAAAATCAGGTATTCTATCAATTCTGCATCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGAAGAATATACTAAAAATCAGGTATTCTATCAATTCTGCATCCT  939

seq1  TGTATGCTAAGACCCTTTGTTTTATTGCTACAGTAAATTTCCACATTTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCTAAGACCCTTTGTTTTATTGCTACAGTAAATTTCCACATTTGA  989

seq1  CTTAAGGTAGAAAAGTCTGAATAGATGATAAAAGATGACACCAAGACAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGTAGAAAAGTCTGAATAGATGATAAAAGATGACACCAAGACAAG  1039

seq1  AAACACTTGTTTTCTACAAAGGTGATATAAACTAACCCTTGTTTGCCATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTGTTTTCTACAAAGGTGATATAAACTAACCCTTGTTTGCCATG  1089

seq1  CCCCACTAGCCTTCAGTTTGAGATGGAAATATATCAACAAAGGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTAGCCTTCAGTTTGAGATGGAAATATATCAACAAAGGAATTC  1137


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