BAC Information

Click to search

BAC

Clone NameB6Ng01-268I09
Chromosome5 (Build37)
Map Location 19,964,413 - 20,080,995
singlet/doubletdoublet
Overlap geneMagi2
Upstream genenone
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268I09.bB6Ng01-268I09.g
ACCGA071357GA071358
length3061,155
definitionB6Ng01-268I09.b B6Ng01-268I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,964,413 - 19,964,718)(20,079,837 - 20,080,995)
sequence
ataagttacttaacctctcccaggctcaatgtctgtgtataaaataaaga
ttagatcaggtgagggttgtaaacgctatttaaatagagtcactgactgg
aggcatcaacatgtgctcttggtatggttcagccactgaaggttgtgcta
ttgggaataagtagggagagatggttacagggtggtcaaaaagatgaagc
tggcctcagagatggccatcagtttgttagtgagcaaaaaatgaaaagca
aatatgggataaagagcgcagaggctggagggggattgtgtgtgttgagg
gagggg

gaattcaaggtgttaagagccacttccaacacataagcaatgacaggaag
ttacaaaagttaaaattaaagcttaagacaatgggaagtgttttctggga
ctcaaagtttgccaaggctttacacacagggacaatacaaacaatgtgcc
ttatgttctggatggcctcgtgacagcaagaagaggctgggcacaggaca
cccgaggacacagaagccactggaagagcagcagggcttgtgtgttgttc
ttctcatttagttaaatgtcttggttttagggtaggaccatagagacaag
gaatctctgttttactttatgtctttcctaagtttaagtgacttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttcttttggtttggtttttcgagacagggtttctctgtatagcc
ctggctgtcctggaactcactttgtagaccaggctggcctagaactcaga
aatccgcctgcctctgcctcccaagtgctgggattaaaggtgtgtaccac
caccgtccggctcgtttaagtgatttcttaagtggctgtgaggtctgtgg
ggaaaagtgtaagcctccacactcaagagtccacctcgctctctcccttt
ccaagtaccatgctttacaatagcagttcccaacttgtgtgtcgtgaacc
ctttggagggtcacctaagacatctgtatatcagatgtttacattatgat
tcacagcagtagcaaaattagagttatggagtcagaccgacaatgatttt
aaggtcaccacaacatgaggaagtctattaaaggtcgcagcactcggaag
gctgagaagcactgctttcagtggaactggaggtctgtagcccagtgttt
gactctctaggatcacttttcaatactgcatacatgtggatatcaggctc
ttcccagattgcagtgggtttggggaaaagtcatcaatgagcaagtctaa
gcttctggcctgtgccagtaaaattacagagtgaaacatcagtgacagcg
agaacactacagtgtagtcattagcttgctagcctgcgatacagaataag
acagatcaaggtgaggcacagcagaaattcctaccaagggaggagaccca
cccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19964413_19964718
seq2: B6Ng01-268I09.b_52_357

seq1  ATAAGTTACTTAACCTCTCCCAGGCTCAATGTCTGTGTATAAAATAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTACTTAACCTCTCCCAGGCTCAATGTCTGTGTATAAAATAAAGA  50

seq1  TTAGATCAGGTGAGGGTTGTAAACGCTATTTAAATAGAGTCACTGACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCAGGTGAGGGTTGTAAACGCTATTTAAATAGAGTCACTGACTGG  100

seq1  AGGCATCAACATGTGCTCTTGGTATGGTTCAGCCACTGAAGGTTGTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCAACATGTGCTCTTGGTATGGTTCAGCCACTGAAGGTTGTGCTA  150

seq1  TTGGGAATAAGTAGGGAGAGATGGTTACAGGGTGGTCAAAAAGATGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATAAGTAGGGAGAGATGGTTACAGGGTGGTCAAAAAGATGAAGC  200

seq1  TGGCCTCAGAGATGGCCATCAGTTTGTTAGTGAGCAAAAAATGAAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAGAGATGGCCATCAGTTTGTTAGTGAGCAAAAAATGAAAAGCA  250

seq1  AATATGGGATAAAGAGCGCAGAGGCTGGAGGGGGATTGTGTGTGTTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGGATAAAGAGCGCAGAGGCTGGAGGGGGATTGTGTGTGTTGAGG  300

seq1  GAGGGG  306
      ||||||
seq2  GAGGGG  306


seq1: chr5_20079837_20080995
seq2: B6Ng01-268I09.g_66_1220 (reverse)

seq1  ATGGTGTGGGTCCTCTTCCCTTTGTTAGGAATTTCCTGCTGTG-CTCA-C  48
      |||| |||||| ||| |||| ||| ||||||||| |||||||| |||| |
seq2  ATGG-GTGGGT-CTCCTCCC-TTGGTAGGAATTT-CTGCTGTGCCTCACC  46

seq1  TTGATCTGTCTTTATCTGTATCGCAGGCTAGCAAGCTAATGACTACACTG  98
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGTCTTATTCTGTATCGCAGGCTAGCAAGCTAATGACTACACTG  96

seq1  TAGTGTCTCCGCTGTCCACTGATGTTTCACTCTGTAATTTTACTGGCACA  148
      ||||||   |||||| ||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCTCGCTGT-CACTGATGTTTCACTCTGTAATTTTACTGGCACA  145

seq1  GGCCAG-AGCTTAGACTTGCTCATTGATGACTTTTCCCCAAAACCCACTG  197
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCCAGAAGCTTAGACTTGCTCATTGATGACTTTTCCCC-AAACCCACTG  194

seq1  CAATCTGGGAAGAGCCCTGATATCCACATGTATGCAGTATTGAAAAGTGA  247
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAATCTGGGAAGAG-CCTGATATCCACATGTATGCAGTATTGAAAAGTGA  243

seq1  TCCTAGAGAGTCAAACACTGGGCTACAGACCTCCAGTTCCACTGAAAGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGAGTCAAACACTGGGCTACAGACCTCCAGTTCCACTGAAAGCA  293

seq1  GTGCTTCTCAGCCTTCCGAGTGCTGCGACCTTTAATAGACTTCCTCATGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTCAGCCTTCCGAGTGCTGCGACCTTTAATAGACTTCCTCATGT  343

seq1  TGTGGTGACCTTAAAATCATTGTCGGTCTGACTCCATAACTCTAATTTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGACCTTAAAATCATTGTCGGTCTGACTCCATAACTCTAATTTTG  393

seq1  CTACTGCTGTGAATCATAATGTAAACATCTGATATACAGATGTCTTAGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTGTGAATCATAATGTAAACATCTGATATACAGATGTCTTAGGT  443

seq1  GACCCTCCAAAGGGTTCACGACACACAAGTTGGGAACTGCTATTGTAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCCAAAGGGTTCACGACACACAAGTTGGGAACTGCTATTGTAAAG  493

seq1  CATGGTACTTGGAAAGGGAGAGAGCGAGGTGGACTCTTGAGTGTGGAGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTACTTGGAAAGGGAGAGAGCGAGGTGGACTCTTGAGTGTGGAGGC  543

seq1  TTACACTTTTCCCCACAGACCTCACAGCCACTTAAGAAATCACTTAAACG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTTCCCCACAGACCTCACAGCCACTTAAGAAATCACTTAAACG  593

seq1  AGCCGGACGGTGGTGGTACACACCTTTAATCCCAGCACTTGGGAGGCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGACGGTGGTGGTACACACCTTTAATCCCAGCACTTGGGAGGCAGA  643

seq1  GGCAGGCGGATTTCTGAGTTCTAGGCCAGCCTGGTCTACAAAGTGAGTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCGGATTTCTGAGTTCTAGGCCAGCCTGGTCTACAAAGTGAGTTC  693

seq1  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAACCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAACCA  743

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  793

seq1  AGAAAGAAAGAAAGAAAGAAGTCACTTAAACTTAGGAAAGACATAAAGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAGTCACTTAAACTTAGGAAAGACATAAAGTA  843

seq1  AAACAGAGATTCCTTGTCTCTATGGTCCTACCCTAAAACCAAGACATTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGATTCCTTGTCTCTATGGTCCTACCCTAAAACCAAGACATTTA  893

seq1  ACTAAATGAGAAGAACAACACACAAGCCCTGCTGCTCTTCCAGTGGCTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGAGAAGAACAACACACAAGCCCTGCTGCTCTTCCAGTGGCTTC  943

seq1  TGTGTCCTCGGGTGTCCTGTGCCCAGCCTCTTCTTGCTGTCACGAGGCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCGGGTGTCCTGTGCCCAGCCTCTTCTTGCTGTCACGAGGCCA  993

seq1  TCCAGAACATAAGGCACATTGTTTGTATTGTCCCTGTGTGTAAAGCCTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACATAAGGCACATTGTTTGTATTGTCCCTGTGTGTAAAGCCTTG  1043

seq1  GCAAACTTTGAGTCCCAGAAAACACTTCCCATTGTCTTAAGCTTTAATTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTTGAGTCCCAGAAAACACTTCCCATTGTCTTAAGCTTTAATTT  1093

seq1  TAACTTTTGTAACTTCCTGTCATTGCTTATGTGTTGGAAGTGGCTCTTAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTGTAACTTCCTGTCATTGCTTATGTGTTGGAAGTGGCTCTTAA  1143

seq1  CACCTTGAATTC  1159
      ||||||||||||
seq2  CACCTTGAATTC  1155


| Home | SequenceCutter | Blast | Download |