BAC Information

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BAC

Clone NameB6Ng01-269E16
Chromosome5 (Build37)
Map Location 19,232,286 - 19,398,815
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269E16.bB6Ng01-269E16.g
ACCGA071929GA071930
length1,0171,190
definitionB6Ng01-269E16.b B6Ng01-269E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,397,991 - 19,398,815)(19,232,286 - 19,233,466)
sequence
gaattccttagggtctctttcaacgttaacactgtagtgcagtttcaaag
aaaacctgaagagctacacaataccatgtggtaaattctgcatggttact
ttcctgatgagatctcgtccacctgacagcatcacactgagactggagga
gacacacagatggatggaggagatatataatgaggtcacatgagagagac
aggtagggtctactgggcaggtaggatttacctaccagtgttacgcccaa
ctacctaccccatggacacttctacggacctcacagaaaaactatggaat
catctgtatttattaacgtgtatcattctaacaaaatacctgaagagaac
aactttaggaagaaagggagagctaattctgccccacagtttgattgctt
gctgacatgaggacagaagaaacaggagtcagctggtgacattgcatgcc
caatcaggaagcagagagaaatgaacacttgtggccagtttgcctttcct
ttctgttcagtcgcatggaattatacacgaacaacatttaggttaggttt
ttcagctttaaataagacaatctagataattcctcacagacatacccaga
gattgccttccatggtgattataaatcctattgactttgcaattaatatt
aaccaccacattacccttgctgcctctctgtctctcagtctctactgcag
gcatatctttagatttccttttgacccaccaatatgcaggtctaagccac
catcatagttatttagagtgatggatctctttgtttctacctttcttctc
agccagataggtgggttcattaaactacaagtctgacggtattagtcctt
ttaaccccctaaggaggttcctgacttaattagaataaccaattcatcac
aacatgacttatgaaacccttctcaacttgagagctacttccaacccaca
ctcctcagagcaagactctgcctttcttcacaggactctagacaccaagc
ttgtagagctgcctcta

gaattctgtcctgtggcacatatgtgcttcatgcttcatgagaaaatatt
gggggagggattggagagctggctcagcaggcaaagtgcttaccttacaa
gtctgatggtatgagtactatccccagaatctacataaaatgttgggatg
tgctctggagagatggttcagcagttaagagctgacaggctgctctccca
gagattccaagcacccacatgtcagctcacaactgtctataactatagtc
ccatgagatccctcttctgatgtgcagatgttcatgtagaagtaacaccc
atctacattcataaataaataagtaaataaataaatctttgccaggtagt
gttggctgacaagtttaattctagaattcagaaggcagaagcagacagat
ctctgattttgagaccagcttagtctatagagttagtttcaggacaacca
aggctacacagacaaaccctgacttgaataaaaaaacaaaacaaaataaa
aagctggcatctggtagcatatatctgtaatatcagcatttctatagcaa
ggtaaatggtagagagaggagaattgcctcaaagctcctgagatagcatg
ccatactcagtgagcagaaacagtgaacacataaacaattaaataaatga
ataaatgtagctggagagaactgactccaaaatttggcctctgacatcca
tatatatgctatggaatacacacacacacacacacacacacacacacaca
cacacacacgctcgcgcgcgcacgcacgcgtgcacacctcatacatatat
gctattataatataatattgacttatataaagtgaaataggaaaccactc
actacacaattaagaatatgaacttatgagtcaatttaaaaaaatgaaag
gaagttgttatttggtgtgaggacagcacagacacaatcaatgggatatc
aagaaaatttgtgcctacccaggaaataactcagttttagcaaatctaat
ggcaattttttgtggtttgatgagtactggccatctgtcatttggaaaat
gtagaacaaaatagaatcagtgaatcctaatcctcaaggtgctcttggga
tccttggggtaggaggacggaaaccgactatatacagctccagagtgttt
ctgttaccctttagggttttatagaagcaccatcaaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19397991_19398815
seq2: B6Ng01-269E16.b_43_868 (reverse)

seq1  AGTTTAATGAACCCACCTATCTGGCTGAGAAGAAAGGTAGAAACAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATGAACCCACCTATCTGGCTGAGAAGAAAGGTAGAAACAAAGAG  50

seq1  ATCCATCACTCTAAATAACTATGATGGTGGCTTAGACCTGCATATTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCACTCTAAATAACTATGATGGTGGCTTAGACCTGCATATTGGTG  100

seq1  GGTCAAAAGGAAATCTAAAGATATGCCTGCAGTAGAGACTGAGAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAAGGAAATCTAAAGATATGCCTGCAGTAGAGACTGAGAGACAGA  150

seq1  GAGGCAGCAAGGGTAATGTGGTGGTTAATATTAATTGCAAAGTCAATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCAAGGGTAATGTGGTGGTTAATATTAATTGCAAAGTCAATAGG  200

seq1  ATTTATAATCACCATGGAAGGCAATCTCTGGGTATGTCTGTGAGGAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAATCACCATGGAAGGCAATCTCTGGGTATGTCTGTGAGGAATTA  250

seq1  TCTAGATTGTCTTATTTAAAGCTGAAAAACCTAACCTAAATGTTGTTCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTGTCTTATTTAAAGCTGAAAAACCTAACCTAAATGTTGTTCGT  300

seq1  GTATAATTCCATGCGACTGAACAGAAAGGAAAGGCAAACTGGCCACAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATTCCATGCGACTGAACAGAAAGGAAAGGCAAACTGGCCACAAGT  350

seq1  GTTCATTTCTCTCTGCTTCCTGATTGGGCATGCAATGTCACCAGCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTCTCTCTGCTTCCTGATTGGGCATGCAATGTCACCAGCTGACT  400

seq1  CCTGTTTCTTCTGTCCTCATGTCAGCAAGCAATCAAACTGTGGGGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTTCTGTCCTCATGTCAGCAAGCAATCAAACTGTGGGGCAGAA  450

seq1  TTAGCTCTCCCTTTCTTCCTAAAGTTGTTCTCTTCAGGTATTTTGTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTCCCTTTCTTCCTAAAGTTGTTCTCTTCAGGTATTTTGTTAGA  500

seq1  ATGATACACGTTAATAAATACAGATGATTCCATAGTTTTTCTGTGAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACACGTTAATAAATACAGATGATTCCATAGTTTTTCTGTGAGGTC  550

seq1  CGTAGAAGTGTCCATGGGGTAGGTAGTTGGGCGTAACACTGGTAGGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAAGTGTCCATGGGGTAGGTAGTTGGGCGTAACACTGGTAGGTAAA  600

seq1  TCCTACCTGCCCAGTAGACCCTACCTGTCTCTCTCATGTGACCTCATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTGCCCAGTAGACCCTACCTGTCTCTCTCATGTGACCTCATTAT  650

seq1  ATATCTCCTCCATCCATCTGTGTGTCTCCTCCAGTCTCAGTGTGATGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCTCCATCCATCTGTGTGTCTCCTCCAGTCTCAGTGTGATGCTG  700

seq1  TCAGGTGGACGAGATCTCATCAGGAAAGTAACCATGCAGAATTTACCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGACGAGATCTCATCAGGAAAGTAACCATGCAGAATTTACCACA  750

seq1  TGGTATTGTGTAGCTCTTCAGGTTTTCTTTGAAACTGC-CTACAGTGTTA  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGTATTGTGTAGCTCTTCAGGTTTTCTTTGAAACTGCACTACAGTGTTA  800

seq1  ACGTTGAAAGAGACCCTAAGGAATTC  825
      ||||||||||||||||||||||||||
seq2  ACGTTGAAAGAGACCCTAAGGAATTC  826


seq1: chr5_19232286_19233466
seq2: B6Ng01-269E16.g_65_1254

seq1  GAATTCTGTCCTGTGGCACATATGTGCTTCATGCTTCATGAGAAAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTGTGGCACATATGTGCTTCATGCTTCATGAGAAAATATT  50

seq1  GGGGGAGGGATTGGAGAGCTGGCTCAGCAGGCAAAGTGCTTACCTTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGATTGGAGAGCTGGCTCAGCAGGCAAAGTGCTTACCTTACAA  100

seq1  GTCTGATGGTATGAGTACTATCCCCAGAATCTACATAAAATGTTGGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGGTATGAGTACTATCCCCAGAATCTACATAAAATGTTGGGATG  150

seq1  TGCTCTGGAGAGATGGTTCAGCAGTTAAGAGCTGACAGGCTGCTCTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGAGAGATGGTTCAGCAGTTAAGAGCTGACAGGCTGCTCTCCCA  200

seq1  GAGATTCCAAGCACCCACATGTCAGCTCACAACTGTCTATAACTATAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCAAGCACCCACATGTCAGCTCACAACTGTCTATAACTATAGTC  250

seq1  CCATGAGATCCCTCTTCTGATGTGCAGATGTTCATGTAGAAGTAACACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGATCCCTCTTCTGATGTGCAGATGTTCATGTAGAAGTAACACCC  300

seq1  ATCTACATTCATAAATAAATAAGTAAATAAATAAATCTTTGCCAGGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACATTCATAAATAAATAAGTAAATAAATAAATCTTTGCCAGGTAGT  350

seq1  GTTGGCTGACAAGTTTAATTCTAGAATTCAGAAGGCAGAAGCAGACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTGACAAGTTTAATTCTAGAATTCAGAAGGCAGAAGCAGACAGAT  400

seq1  CTCTGATTTTGAGACCAGCTTAGTCTATAGAGTTAGTTTCAGGACAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTTGAGACCAGCTTAGTCTATAGAGTTAGTTTCAGGACAACCA  450

seq1  AGGCTACACAGACAAACCCTGACTTGAATAAAAAAACAAAACAAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACACAGACAAACCCTGACTTGAATAAAAAAACAAAACAAAATAAA  500

seq1  AAGCTGGCATCTGGTAGCATATATCTGTAATATCAGCATTTCTATAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCATCTGGTAGCATATATCTGTAATATCAGCATTTCTATAGCAA  550

seq1  GGTAAATGGTAGAGAGAGGAGAATTGCCTCAAAGCTCCTGAGATAGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGGTAGAGAGAGGAGAATTGCCTCAAAGCTCCTGAGATAGCATG  600

seq1  CCATACTCAGTGAGCAGAAACAGTGAACACATAAACAATTAAATAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTCAGTGAGCAGAAACAGTGAACACATAAACAATTAAATAAATGA  650

seq1  ATAAATGTAGCTGGAGAGAACTGACTCCAAAATTTGGCCTCTGACATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAGCTGGAGAGAACTGACTCCAAAATTTGGCCTCTGACATCCA  700

seq1  TATATATGCTATGGAATACACACACACACACACACACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGCTATGGAATACACACACACACACACACACACACACACACACA  750

seq1  CACACACACGCTCGCGCGCGCACGCACGCGTGCACACCTCATACATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACGCTCGCGCGCGCACGCACGCGTGCACACCTCATACATATAT  800

seq1  GCTATTATAATATAATATTGACTTATATAAAGTGAAATAGGAAACCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATAATATAATATTGACTTATATAAAGTGAAATAGGAAACCACTC  850

seq1  ACTACACAATTAAGAATATGAACTTATGAGTCAATTTAAAAAAATG-AAG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTACACAATTAAGAATATGAACTTATGAGTCAATTTAAAAAAATGAAAG  900

seq1  GAAGTTGTTATTTGGTGTGAGGACAGCACAGACACAATCAATGGGATATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTTATTTGGTGTGAGGACAGCACAGACACAATCAATGGGATATC  950

seq1  AAGAAAA-TTGTGCCTACCCAGGGAAATAACTCAGTTTTAGCAAATCTAA  998
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGAAAATTTGTGCCTACCCA-GGAAATAACTCAGTTTTAGCAAATCTAA  999

seq1  TGGCAA-TTTTTGTGGTTTGATGAGTACTGG-CATCTGTCATTTGGAAAA  1046
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGCAATTTTTTGTGGTTTGATGAGTACTGGCCATCTGTCATTTGGAAAA  1049

seq1  TGTAG-ACAAAATAGAATCAGTG-ATTCTAAT-CTCAAGGTGGCTTCTGG  1093
      ||||| ||||||||||||||||| || ||||| |||||||||   |  ||
seq2  TGTAGAACAAAATAGAATCAGTGAATCCTAATCCTCAAGGTGCTCTTGGG  1099

seq1  ATCTTGGGGGAAGAAAGACAGAAAACCCGACCTTTTATACAGCTTCCCAG  1143
      ||| | |||| || | ||| ||||  |||||  | |||||||||  ||||
seq2  ATCCTTGGGGTAGGAGGACGGAAA--CCGAC--TATATACAGCT--CCAG  1143

seq1  ATGTTTTCTG-TACCCTTTAGG--TTTATAG------CACCAAAGAG  1181
      |   |||||| |||||||||||  |||||||      || |||||||
seq2  AGTGTTTCTGTTACCCTTTAGGGTTTTATAGAAGCACCATCAAAGAG  1190


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