BAC Information

Click to search

BAC

Clone NameB6Ng01-270H04
Chromosome5 (Build37)
Map Location 15,010,185 - 15,212,600
singlet/doubletdoublet
Overlap geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270H04.bB6Ng01-270H04.g
ACCGA072783GA072784
length1,171865
definitionB6Ng01-270H04.b B6Ng01-270H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,211,426 - 15,212,600)(15,010,185 - 15,011,048)
sequence
gaattcagtccaatttctcttttttaaccacttcatactaatttacttat
cttcataataaggaagaatatgtcttccttgtgtatttaaaattatgaga
ttagatactgatattggacagaaggtaattgggttcataagaagtgatac
ataatagaaaagaacatgttcatggatttggagtcaggactatgctgtgt
attggttattgaaaattaatatcagagtgacacagttgtgtgtctttagg
aagatgactggtgggagacactgatcctaaaatgcctttgtattttagtc
tattttcctagaaaaacataggaaaaaagagtatattggggtacatgcag
gaaacaggtctgggagccattaaatattcccagaggaaaagtttcaacca
gttgctaaaagtgttttaccaggtgggatgaaagatatcctttcaaatac
aattggtgtgaaatgggtgagcgagagctttaactattcattctctttcc
actttctctctactttggggttactcaaagaatcccaaaacctttccacc
aaaatctgggtttctacagagcagagattggaaaacaagttatgaaaaca
cacgcagagttcagttaagggcctcacttgagtggaggaaagcaggaaag
gtttaggggagcagaaaagttatttttcagggcctgaggatataaaaccc
caggtgtcttgggagagaacagaatactttggtggtatcccagctggaaa
gagatggtgtgtgcaaatcaggataatagcaagaaggttagtgacataga
acgatattctacagaaagtgttaattgagggaaactactactgtcctgga
gttcccagcagcagatctgttccttttttaaaaattattagatattttct
ttatttacatttcaaatgttatcccctttcctggtctcctcactgaaaag
cccctattccattcttccatcccctgctcacaactcacccactcccactt
cctgtccttattattcgcctacactggggcattgagcttaaatgggacaa
gcctcctcctcccattgatgtcaacaaaggtcatcctctatttcatgtgg
gtggctgaagcatgtccctcagtgctacgcattggttcatgctttaagtt
cctgggaagtcatgggagtac
gaattctgcactaaacccatctagtcctgggctttgtttggttgggagac
ttttaatgactgcttctatttctttggcagttatgggagtgttagactat
ttatctgatcctggtttcattttggtacctagtgtctgtctagaaaattg
tccatttcatccaattttttcagtattgttgagtatagtcttttgtaata
ggaaattatgatttttgaatatactgtttattctgttgttatttctccct
tttcaattctgatttttttaatttggatactgtctctttcccctctggtt
agtctggctaagggtttatctattttgttgctttctcaaagaaccagctc
ccggttttattgattctttgtatagttcatttgtttctacttggttgatt
tcagctctgtatttgattatttcctgacatctactcctcttgggtgtatg
ttgggaacaaaataaaagaagggcgggggtcttggactggggtctgggga
gaagtaggctaagaaatagatgcccacaccccgccatagtttccctattc
tctggtcagtcaggaatgggagggctgctatctaccctatccactcatcc
ctgtgtgggcattcctctatcccacacttcagggggtggtcaaggggcag
ccctgcctgggaacccccccccagctactttgctaaagcccccagtgttg
tgggagagacggaagagggaagaaattcccaacactgaccagagtgcgca
acagaacttgaaggagcagagcagagactctatggttttagagccttatt
atagaaatgcagaggaaagagagaaaggtagaaaggaggaaaagagagag
gggggaggggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15211426_15212600
seq2: B6Ng01-270H04.b_43_1213 (reverse)

seq1  GTACTCCCA-GATTTCCCAGGAAC-TAAACCATGAACCAAAGCGTA-CAC  47
      ||||||||| || ||||||||||| |||| |||||||||| ||||| |||
seq2  GTACTCCCATGACTTCCCAGGAACTTAAAGCATGAACCAATGCGTAGCAC  50

seq1  TTGGAGGGAACAATGGCTCCAGCCA--CACATGAAATAGAGGATGA-CTT  94
      |  ||||| |||   ||| ||||||  ||||||||||||||||||| |||
seq2  T--GAGGG-ACA--TGCTTCAGCCACCCACATGAAATAGAGGATGACCTT  95

seq1  TGTTGGACATCAATGGGAGGA-GAGGCCCTTGGTCCCTTAAGGCTCAATG  143
      |||| |||||||||||||||| ||||  ||||  || || | ||||||||
seq2  TGTT-GACATCAATGGGAGGAGGAGG--CTTGTCCCATTTAAGCTCAATG  142

seq1  CCCCAGTGTAGGGGAATAA-CAGGACAGGGAAGTGGGAGTGGGTGAGTTG  192
      |||||||||||| ||||||  |||||| ||||||||||||||||||||| 
seq2  CCCCAGTGTAGGCGAATAATAAGGACA-GGAAGTGGGAGTGGGTGAGTT-  190

seq1  GTGAGCAGGGCATGGAAGAATGGAATAGGGGCTTTTCAGTGAGGAGACCA  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGGGGATGGAAGAATGGAATAGGGGCTTTTCAGTGAGGAGACCA  240

seq1  GGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATAATTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATAATTT  290

seq1  TTTAAAAAGGAACAGCTCTTCTGCTGCGAACTCCAGGACAGTAGTATTTT  342
      || |||||||||||| ||| |||||| ||||||||||||||||||| |||
seq2  TTAAAAAAGGAACAGATCTGCTGCTGGGAACTCCAGGACAGTAGTAGTTT  340

seq1  CCCTCAATTAACACTTTCTGTAGAATATCTTTCTATGTCACTAACCTTCT  392
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCCTCAATTAACACTTTCTGTAGAATATCGTTCTATGTCACTAACCTTCT  390

seq1  TGCTATTATCCTGATTTGCACACACCATCTCTTTCCAGCTCGGATACCAC  442
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCTATTATCCTGATTTGCACACACCATCTCTTTCCAGCTGGGATACCAC  440

seq1  CAAAGTATTCTGTTCTCTCCCAAGACACCTGGGGTTTTATATCCTCAGGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATTCTGTTCTCTCCCAAGACACCTGGGGTTTTATATCCTCAGGC  490

seq1  CCTGAAAAATAACTTATCTGCTCCCCTAAACCTTTCCTGCTTTCCTCCAC  542
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAATAACTTTTCTGCTCCCCTAAACCTTTCCTGCTTTCCTCCAC  540

seq1  TCAAGTGAGGCCCTTAACTGACCTCTGCGTGTGTTTTCATAACTTGTTTT  592
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAAGTGAGGCCCTTAACTGAACTCTGCGTGTGTTTTCATAACTTGTTTT  590

seq1  CCAATCTCTGCCCTGTAGAAACCCAGATTTTGGTGGAAAGGTTTTGGGAT  642
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCTGCTCTGTAGAAACCCAGATTTTGGTGGAAAGGTTTTGGGAT  640

seq1  TCTTTGAGTAACCCCAAAGTAGAGAGAAAGTGGAAAGAGGATGAATAGTT  692
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTTGAGTAACCCCAAAGTAGAGAGAAAGTGGAAAGAGAATGAATAGTT  690

seq1  AAAGCTTTCGCTCACCCATTTCACACCAATTGTATTTGAAAGGATATCTT  742
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTCGCTCACCCATTTCACACCAATTGTATTTGAAAGGATATCTT  740

seq1  TCATCCCATCTGGTAAAAACACTTTTAGCAACTGGTTGAAACTTTTCCTC  792
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TCATCCCACCTGGT-AAAACACTTTTAGCAACTGGTTGAAACTTTTCCTC  789

seq1  TGGGAATACTTAATGGCTCCCAGACCTGTTTCCTGGATGTACCCCAATAT  842
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGAATATTTAATGGCTCCCAGACCTGTTTCCTGCATGTACCCCAATAT  839

seq1  ATTCTTTTTTCCTATGTTTTTCTAGGAAAATAGAGTAAAATACAGAAGGC  892
      | |||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  ACTCTTTTTTCCTATGTTTTTCTAGGAAAATAGACTAAAATACA-AAGGC  888

seq1  ATTTTAGGATCAGTGTCTCCCACCAGTCATCTTCCTAAAGACACACAACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGATCAGTGTCTCCCACCAGTCATCTTCCTAAAGACACACAACT  938

seq1  GTGTCACGCTGATATTAATTTTCAATAACCAATACACAGCATAGTCCTGA  992
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTCTGATATTAATTTTCAATAACCAATACACAGCATAGTCCTGA  988

seq1  CTCCAAATCCATGAACATGTTCTTTTCTATTATGTATCACTTCTTATGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATCCATGAACATGTTCTTTTCTATTATGTATCACTTCTTATGAA  1038

seq1  CCCAATTACCTTCTGACCAATATCAGTATCTAATCTCATAATTTTAAATA  1092
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCAATTACCTTCTGTCCAATATCAGTATCTAATCTCATAATTTTAAATA  1088

seq1  CACAAGGAAGACATATTCTTCTTTACTATGAAGATAAGTAAATTAGTATG  1142
      ||||||||||||||||||||| ||| ||||||||||||||||||||||||
seq2  CACAAGGAAGACATATTCTTCCTTATTATGAAGATAAGTAAATTAGTATG  1138

seq1  AAGTGGTTAAAAAAGAGAAATTGGACTGAATTC  1175
      |||||||||||||||||||||||||||||||||
seq2  AAGTGGTTAAAAAAGAGAAATTGGACTGAATTC  1171

seq1: chr5_15010185_15011048
seq2: B6Ng01-270H04.g_66_930

seq1  GAATTCTGCACTAAACCCATCTAGTCCTGGGCTTTGTTTGGTTGGGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTAAACCCATCTAGTCCTGGGCTTTGTTTGGTTGGGAGAC  50

seq1  TTTTAATGACTGCTTCTATTTCTTTGGCAGTTATGGGAGTGTTAGACTGT  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTAATGACTGCTTCTATTTCTTTGGCAGTTATGGGAGTGTTAGACTAT  100

seq1  TTATCTAATCCTGGTTTCATTTTGGTACCTAGTGTCTGTCTAGAAAATTG  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGATCCTGGTTTCATTTTGGTACCTAGTGTCTGTCTAGAAAATTG  150

seq1  TCCATTTCATCCAATTTTTTCAGTATTGTTGAGTATAGTCTTTTGTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCATCCAATTTTTTCAGTATTGTTGAGTATAGTCTTTTGTAATA  200

seq1  GGAAATTATGATTTTTGAATATTCTGTTTATTCTGTTGTTATTTCTCCCT  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAAATTATGATTTTTGAATATACTGTTTATTCTGTTGTTATTTCTCCCT  250

seq1  TTTCAATTCTGATTTTGTTAATTTGGATACTGTCTCTTTGCCCTCTGGTT  300
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  TTTCAATTCTGATTTTTTTAATTTGGATACTGTCTCTTTCCCCTCTGGTT  300

seq1  AATCTGGCTAAGGGATTATCTATTGTGTTGCTTTCTCAAAGAACCAGCTC  350
      | |||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  AGTCTGGCTAAGGGTTTATCTATTTTGTTGCTTTCTCAAAGAACCAGCTC  350

seq1  CCGGTTTTATTGATTCTTTGTTTAGTTCTTTTGTTTCTACTTGGTTGATT  400
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  CCGGTTTTATTGATTCTTTGTATAGTTCATTTGTTTCTACTTGGTTGATT  400

seq1  TCAGCTCTGTATTTGATTATTTCCTGACATCTACTCCTCTTGGGTGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTGTATTTGATTATTTCCTGACATCTACTCCTCTTGGGTGTATG  450

seq1  TTGGGAACAAAATACAAGAAGGGGGGGGGTCTTGGACTGGGGCCTGGGGA  500
      |||||||||||||| |||||||| |||||||||||||||||| |||||||
seq2  TTGGGAACAAAATAAAAGAAGGGCGGGGGTCTTGGACTGGGGTCTGGGGA  500

seq1  GAAGTAGGCTAAGAAATAAATGCCCACACCCCACCAGAGTTTTCCTATTC  550
      |||||||||||||||||| ||||||||||||| ||| ||||| |||||||
seq2  GAAGTAGGCTAAGAAATAGATGCCCACACCCCGCCATAGTTTCCCTATTC  550

seq1  TCTGGTCAGTCAGGCATGGGAGGGCTGCTATCTACTCTATCCACTCATCC  600
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  TCTGGTCAGTCAGGAATGGGAGGGCTGCTATCTACCCTATCCACTCATCC  600

seq1  CTGGGTGGGCATTCCTCTATCCCACTCTTCACTGGGTGGTCAAGGGGCAG  650
      ||| ||||||||||||||||||||| |||||  |||||||||||||||||
seq2  CTGTGTGGGCATTCCTCTATCCCACACTTCAGGGGGTGGTCAAGGGGCAG  650

seq1  CCCTGCCTGGGAACACCCCCCCCAGCTACTTTGCTAAAGCCCCCAGGGTT  700
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  CCCTGCCTGGGAAC-CCCCCCCCAGCTACTTTGCTAAAGCCCCCAGTGTT  699

seq1  GTGGGAGAGAGGGAAGAGTGAAGAAATTCCCAACACTGACCAGAGTGTGC  750
      |||||||||| ||||||| |||||||||||||||||||||||||||| ||
seq2  GTGGGAGAGACGGAAGAGGGAAGAAATTCCCAACACTGACCAGAGTGCGC  749

seq1  AGCAGAACTTGAAGGAGCAGAGCAGAGACTCTATGGTTTTAGAGCCTTAT  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACTTGAAGGAGCAGAGCAGAGACTCTATGGTTTTAGAGCCTTAT  799

seq1  TATAGAAATGCAGAGGAAAGAGAG-AAGGTAGAAAGGAGGAAAAGAGAGA  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATAGAAATGCAGAGGAAAGAGAGAAAGGTAGAAAGGAGGAAAAGAGAGA  849

seq1  GGGGGGA-GGGAGGGA  864
      ||||||| ||||||||
seq2  GGGGGGAGGGGAGGGA  865