BAC Information

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BAC

Clone NameB6Ng01-270H05
Chromosome5 (Build37)
Map Location 33,231,280 - 33,299,798
singlet/doubletdoublet
Overlap geneDepdc5
Upstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141
Downstream geneYwhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270H05.bB6Ng01-270H05.g
ACCGA072785GA072786
length1,182327
definitionB6Ng01-270H05.b B6Ng01-270H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,298,613 - 33,299,798)(33,231,280 - 33,231,612)
sequence
ttctgtagaccaggatatcctccaactcagagctctgcctgcctctgctt
cctgagtgctggggttaaaggcgtgccctaccacacccagctaaaattta
agatgagaaaacatttgtatttttttttcccctgagacagggtttctctg
tatagccctggctgtcctggaactcactttgtagaccaggctggccttga
actcagaaatccgcctgcctctgcctcctggagtgctgggattaaaggtg
tgcgccaccatgcccggctccatttgcattttaaaaaagctctctgttag
tattgggaatcaaacccaaagccttgagtatataaactggatggttcacc
tctaagccacattcctagtataaagttacttttaacatagtattttaggg
actgagagtttagttcagttgtagactacttgcctagcatgtaaaaaaaa
ggctttgtttgaatccctaaaacttaaaaaacaaaaaaaaaaaaaaaaac
aaaaacttgaaaaaaaattccatggaaacttttatgatatgagcaaaatt
aataaatattaaattagataaggtacagccaaaattataaaaaataaatg
cccagactctctttcatctccctgtagtaaaagctcagagaccacaaaat
cagctcactatacaaacaaaataatgtgtttgaacttctcagaagacacg
aaagtctgactagggttgtctgccattctgttgtacttgctaggccttat
aaaggcctaaactctcaaaggtttgattgcattattctttccaagtattt
ctcaggagtcttcaaacaagcaagcaaacaaacaaaaaacaaaaacaaac
gaaaacaaggaataggagctccattatcaaaaaggtacaggcttgtgtgg
acgtgcttcaggaacttccaattccacctccagtagagtgaatggttaac
agtgaagaaacaactacatagcaaactgcaagcctcagtcagatcctcag
tctgtgcgggtcacatgctgcacctgaatagaaattccaccccactacca
atcagttagaatgtccctgcgaggaaaggacctaaagagcttgagggaga
ctgtctagagcatcagtacagtggaatcctgcactcctgcttgtgagcac
acaggaaacagttccctgctggtgagaccacc
acagaacaggccttcctctgccccctgggtgctgggattaaaggtgtgtg
ccatgacacctggctagtggacactcttagtctgaaaacttgggaattga
aggcagcagaaaggagaatcagtagttgaaggactgacctacttctgtgt
ttagaataattttgccttaaagggtgtcttatttgcctttctgggggagc
ccagggacttgcacatgctaagcatataccattgaactacatctttagcc
cccaaagatagctttctaaaaaaaaaagtttaagtatagagcccaggggt
ggtgggtggtaggagtggtggaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_33298613_33299798
seq2: B6Ng01-270H05.b_48_1229 (reverse)

seq1  GGTGG-CTCACCAGCAGGGGACTGTTTCCTGTGTGCTCTCCAGAGCCAGG  49
      ||||| ||||||||||||| |||||||||||||||||| | ||   ||||
seq2  GGTGGTCTCACCAGCAGGGAACTGTTTCCTGTGTGCTCACAAG---CAGG  47

seq1  AGTGCAGGA-TCAACTGTACTGATGCTCTAGACAGTCTCCCTCAAAGCCT  98
      ||||||||| || ||||||||||||||||||||||||||||||||   ||
seq2  AGTGCAGGATTCCACTGTACTGATGCTCTAGACAGTCTCCCTCAA--GCT  95

seq1  CTTTAGGTTCTTTTCCCCTTCGCCAGGGAACCTTCTTACTGA-TGGTAGT  147
      |||||||| ||||    | ||| ||||| || |||| ||||| |||||||
seq2  CTTTAGGTCCTTT----CCTCG-CAGGG-ACATTCTAACTGATTGGTAGT  139

seq1  -GAGTGG-ATTTCTATTCAGGTGCAGCATGTGACCCGCACAGACTGA-GA  194
       | |||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGGTGGAATTTCTATTCAGGTGCAGCATGTGACCCGCACAGACTGAGGA  189

seq1  TCTGACTTGAGCTTTGCAGTTTGCTATGTAGTTG-TTCTTCACTGTTAAC  243
      |||||| ||||  ||||||||||||||||||||| |||||||||||||||
seq2  TCTGAC-TGAGGCTTGCAGTTTGCTATGTAGTTGTTTCTTCACTGTTAAC  238

seq1  CATTCACTCTACTGGA-GTGGAATTGGAAGTTCCTGAAGCACCGTCCACA  292
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  CATTCACTCTACTGGAGGTGGAATTGGAAGTTCCTGAAGCA-CGTCCACA  287

seq1  CAAGCCTGTACCTTTTTGATAATGGAGCTCCTATTCCTTGTTTTCGTTTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGTACCTTTTTGATAATGGAGCTCCTATTCCTTGTTTTCGTTTG  337

seq1  TTTTTGTTTTTTGTTTGTTTGCTTGCTTGTTTGAAGACTCCTGAGAAATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTGTTTGTTTGCTTGCTTGTTTGAAGACTCCTGAGAAATA  387

seq1  CTTGGAAAGAATAATGCAATCAAACCTTTGAGAGTTTAGGCCTTTATAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAGAATAATGCAATCAAACCTTTGAGAGTTTAGGCCTTTATAAG  437

seq1  GCCTAGCAAGTACAACAGAATGGCAGACAACCCTAGTCAGACTTTCGTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCAAGTACAACAGAATGGCAGACAACCCTAGTCAGACTTTCGTGT  487

seq1  CTTCTGAGAAGTTCAAACACATTATTTTGTTTGTATAGTGAGCTGATTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGAAGTTCAAACACATTATTTTGTTTGTATAGTGAGCTGATTTT  537

seq1  GTGGTCTCTGAGCTTTTACTACAGGGAGATGAAAGAGAGTCTGGGCATTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTCTGAGCTTTTACTACAGGGAGATGAAAGAGAGTCTGGGCATTT  587

seq1  ATTTTTTATAATTTTGGCTGTACCTTATCTAATTTAATATTTATTAATTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATAATTTTGGCTGTACCTTATCTAATTTAATATTTATTAATTT  637

seq1  TGCTCATATCATAAAAGTTTCCATGGAATTTTTTTTCAAGTTTTTG-TTT  691
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCTCATATCATAAAAGTTTCCATGGAATTTTTTTTCAAGTTTTTGTTTT  687

seq1  TTTTTTTTTTTTTGTTTTTTAAGTTTTAGGGATTCAAACAAAGCCTTTTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGTTTTTTAAGTTTTAGGGATTCAAACAAAGCCTTTTT  737

seq1  TTTACATGCTAGGCAAGTAGTCTACAACTGAACTAAACTCTCAGTCCCTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGCTAGGCAAGTAGTCTACAACTGAACTAAACTCTCAGTCCCTA  787

seq1  AAATACTATGTTAAAAGTAACTTTATACTAGGAATGTGGCTTAGAGGTGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTATGTTAAAAGTAACTTTATACTAGGAATGTGGCTTAGAGGTGA  837

seq1  ACCATCCAGTTTATATACTCAAGGCTTTGGGTTTGATTCCCAATACTAAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCAGTTTATATACTCAAGGCTTTGGGTTTGATTCCCAATACTAAC  887

seq1  AGAGAGCTTTTTTAAAATGCAAATGGAGCCGGGCATGGTGGCGCACACCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTTTTTTAAAATGCAAATGGAGCCGGGCATGGTGGCGCACACCT  937

seq1  TTAATCCCAGCACTCCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTCCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAG  987

seq1  GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAG  1037

seq1  AAACCCTGTCTCAGGGGAAAAAAAAATACAAATGTTTTCTCATCTTAAAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCAGGGGAAAAAAAAATACAAATGTTTTCTCATCTTAAAT  1087

seq1  TTTAGCTGGGTGTGGTAGGGCACGCCTTTAACCCCAGCACTCAGGAAGCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGGGTGTGGTAGGGCACGCCTTTAACCCCAGCACTCAGGAAGCA  1137

seq1  GAGGCAGGCAGAGCTCTGAGTTGGAGGATATCCTGGTCTACAGAA  1186
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCAGAGCTCTGAGTTGGAGGATATCCTGGTCTACAGAA  1182

seq1: chr5_33231280_33231612
seq2: B6Ng01-270H05.g_62_394

seq1  GAATTCACAGAACAGGCCTTCCTCTGCCCCCTGGGTGCTGGGATTAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAACAGGCCTTCCTCTGCCCCCTGGGTGCTGGGATTAAAGG  50

seq1  TGTGTGCCATGACACCTGGCTAGTGGACACTCTTAGTCTGAAAACTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCATGACACCTGGCTAGTGGACACTCTTAGTCTGAAAACTTGGG  100

seq1  AATTGAAGGCAGCAGAAAGGAGAATCAGTAGTTGAAGGACTGACCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGGCAGCAGAAAGGAGAATCAGTAGTTGAAGGACTGACCTACTT  150

seq1  CTGTGTTTAGAATAATTTTGCCTTAAAGGGTGTCTTATTTGCCTTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTAGAATAATTTTGCCTTAAAGGGTGTCTTATTTGCCTTTCTGG  200

seq1  GGGAGCCCAGGGACTTGCACATGCTAAGCATATACCATTGAACTACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCCAGGGACTTGCACATGCTAAGCATATACCATTGAACTACATCT  250

seq1  TTAGCCCCCAAAGATAGCTTTCTAAAAAAAAAAGTTTAAGTATAGAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCCCAAAGATAGCTTTCTAAAAAAAAAAGTTTAAGTATAGAGCCC  300

seq1  AGGGGTGGTGGGTGGTAGGAGTGGTGGAGGAGA  333
      |||||||||||||||||||||||||||||||||
seq2  AGGGGTGGTGGGTGGTAGGAGTGGTGGAGGAGA  333