BAC Information

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BAC

Clone NameB6Ng01-270M03
Chromosome5 (Build37)
Map Location 50,535,495 - 50,536,539
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125
Downstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270M03.bB6Ng01-270M03.g
ACCGA073016GA073017
length1,2131,033
definitionB6Ng01-270M03.b B6Ng01-270M03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggagccatagatgcaagcatcataatagaatacaagaaataga
agaaagaatcccaggtgcagaagataccatagaaaacatggaaacaacaa
agaaagaaaatgaaaaatgtgcccttctggtcccaccagcaccagggtag
ctagggcacggagtcggctgacaaccacaagctacccacaagacctgcca
tggaaacttgagacctctggtgagtggaacacagcatctgctccaatcca
atctagcaggacctgagactgcattaattaggaaagcagaaaacccagcc
tgatcaggggcacaaatcccttctggtccatgccagcacaggggtacctt
gggcgaggagtctgtggacacctgtaaggtatacacaggaccctccacag
gatcttaagacctctgtgagtggatcacaacttctgccaagaggcaggtt
tgaacaccagatatctgggcaccttccctgcaagaggagagcctacctgc
agtcccccttttcttttaataagagcaataggccacccatattaatgaga
gtggagatagaggtcaaatccccagtgtgcaggtaaaggagccatgtaca
ggattagctcttaggctcacaggcttttacccagagcaaccctgacctgc
tcccgtgtcgtttttcctggggagaaggacacttggacactcaaccttct
tgaaagatgacatgtctccctagaataggctcatatatgccgcagagccc
ttctactgcagtgcttagccgtgcaactctcttgggctgctgaagcacac
tcactctatcctgtgcaatgagactagcctcatggggtgcaagagctgaa
tggccagcgacctattgcttaagcatagatatatcaggggaagcaccatg
ttctagagctgcaagtgcctgggcaataaccaccttgtctctcctagttt
gggccttaagcttacagaccaaccagagagcaacactaatccacagcaag
tgtatctccaataatatcatcccacccattctttaagaagaaatgctgag
ggagatccaattgggtatccttgatcaggacagtccagcgccgtgggtga
acctgatgatggcaagtctcaattccgagtctgtcaaattcaggcaattc
atcgtaacgtaacctggatgacgttttgcaattagacctgtcctagataa
attctcatacgct
gaattcaaacaaatgtagtcttaagagggttagcagtgcagttctttttt
tttttttttgctttcaatttaatttaattattattatttttcttttgcac
tgtagggaggtgaaacccagggtgtcaaataaactaaacatgcattcaag
cattcagccatactcacccccagcccttgttttctggtgtttctaacagt
aagctcatgtgtgtggataggcctttgtgttaatagattgacgtttaaat
gagcccagtttgtcatgtttgccaatctctagagtttgacaccattgaat
gtgaagatgtgaggagaagtggaccatttctgcagctttcaagcaaggaa
actcaggtaaacgtcactgcagcatgcacattatctttctgtgtatcagt
ttcactatgggggttttgagagtctgctcataggacagattttcctttgt
ttttcaccagaacctggaactaatcctaaggtcaggccactttttggtaa
cctcttagtgttggaatatttatactgttttaaaattaaaatttatttga
agattacttctttttgttgttgctatattttcattttttaaaaatgtgtc
aggttatttttgtacacacttactggaaacattggggatttttgtttttt
gtttttgttttttgttttttgtgtgtctgtatatatctgagtatatgtat
gtacatttgcatgtgggtgttgtgtgcatacatatgtccatgcttataga
gagacaaaaggttggaaagtgaggtttgctctgacctttagtcaggacag
gtttattcattgtcagtgggtactttttcatccatgtatgcagatgccag
aatgcttacagaagaagatggaatggtcccttatagaggtgaaatgatgt
ctgctttttctcttgaaaacacactgcttcatgcactaaactaactggtt
caaatgggtctaagactggacaaaaattcagctacagcactgtgtatggc
cttctgtagactattggttgactatattgcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_50535495_50536539
seq2: B6Ng01-270M03.g_66_1098

seq1  GAATTCAAACAAATGTAGTCTTAAGAGGGTTAGCAGTGCAGTTCTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAATGTAGTCTTAAGAGGGTTAGCAGTGCAGTTCTTTTTT  50

seq1  TTTTTTTTTGCTTTCAATTTAATTTAATTATTATTATTTTTCTTTTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGCTTTCAATTTAATTTAATTATTATTATTTTTCTTTTGCAC  100

seq1  TGTAGGGAGGTGAAACCCAGGGTGTCAAATAAACTAAACATGCATTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGAGGTGAAACCCAGGGTGTCAAATAAACTAAACATGCATTCAAG  150

seq1  CATTCAGCCATACTCACCCCCAGCCCTTGTTTTCTGGTGTTTCTAACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGCCATACTCACCCCCAGCCCTTGTTTTCTGGTGTTTCTAACAGT  200

seq1  AAGCTCATGTGTGTGGATAGGCCTTTGTGTTAATAGATTGACGTTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATGTGTGTGGATAGGCCTTTGTGTTAATAGATTGACGTTTAAAT  250

seq1  GAGCCCAGTTTGTCATGTTTGCCAATCTCTAGAGTTTGACACCATTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGTTTGTCATGTTTGCCAATCTCTAGAGTTTGACACCATTGAAT  300

seq1  GTGAAGATGTGAGGAGAAGTGGACCATTTCTGCAGCTTTCAAGCAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATGTGAGGAGAAGTGGACCATTTCTGCAGCTTTCAAGCAAGGAA  350

seq1  ACTCAGGTAAACGTCACTGCAGCATGCACATTATCTTTCTGTGTATCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTAAACGTCACTGCAGCATGCACATTATCTTTCTGTGTATCAGT  400

seq1  TTCACTATGGGGGTTTTGAGAGTCTGCTCATAGGACAGATTTTCCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATGGGGGTTTTGAGAGTCTGCTCATAGGACAGATTTTCCTTTGT  450

seq1  TTTTCACCAGAACCTGGAACTAATCCTAAGGTCAGGCCACTTTTTGGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCAGAACCTGGAACTAATCCTAAGGTCAGGCCACTTTTTGGTAA  500

seq1  CCTCTTAGTGTTGGAATATTTATACTGTTTTAAAATTAAAATTTATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGTGTTGGAATATTTATACTGTTTTAAAATTAAAATTTATTTGA  550

seq1  AGATTACTTCTTTTTGTTGTTGCTATATTTTCATTTTTTAAAAATGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTTCTTTTTGTTGTTGCTATATTTTCATTTTTTAAAAATGTGTC  600

seq1  AGGTTATTTTTGTACACACTTACTGGAAACATTGGGGATTTTTGTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTTTTGTACACACTTACTGGAAACATTGGGGATTTTTGTTTTTT  650

seq1  GTTTTTGTTTTTTGTTTTTTGTGTGTCTGTATATATCTGAGTATATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTGTTTTTTGTGTGTCTGTATATATCTGAGTATATGTAT  700

seq1  GTACATTTGCATGTGGGTGTTGTGTGCATACATATGTCCATGCTTATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTGCATGTGGGTGTTGTGTGCATACATATGTCCATGCTTATAGA  750

seq1  GAGACAAAAGGTTGGAAAGTGAGGTTTGCTCTGACCTTTAGTCAGGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAAGGTTGGAAAGTGAGGTTTGCTCTGACCTTTAGTCAGGACAG  800

seq1  GTTTATTCATTGTCAGTGGGTACTTTTTCATCCATGTATGCAGATGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCATTGTCAGTGGGTACTTTTTCATCCATGTATGCAGATGCCAG  850

seq1  AATGCTTACAGAAGAAGATGGAATGGTCCCTTATAGAGGTGAAATGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTACAGAAGAAGATGGAATGGTCCCTTATAGAGGTGAAATGATGT  900

seq1  CTGC-TTTTCTC-TGAAAACACACTGCTTCCATGCCACTAAACCTAACTG  948
      |||| ||||||| |||||||||||||||| |||| ||||||| |||||||
seq2  CTGCTTTTTCTCTTGAAAACACACTGCTT-CATG-CACTAAA-CTAACTG  947

seq1  GTTCAAAATGGGGCCTAGAGACTGGGACCAAAAAAATTCAGCTACAAGGC  998
      |||||||   ||| ||| |||||||    | |||||||||||||||  ||
seq2  GTTCAAA--TGGGTCTA-AGACTGG----ACAAAAATTCAGCTACA--GC  988

seq1  ACTGGTGTATGGGCTTCTGTTAGACTATTGTTTGACTATATTGCATA  1045
      ||| |||||||| |||||| |||||||||| ||||||||||||||||
seq2  ACT-GTGTATGGCCTTCTG-TAGACTATTGGTTGACTATATTGCATA  1033