BAC Information

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BAC

Clone NameB6Ng01-271D01
Chromosome5 (Build37)
Map Location 13,221,131 - 13,388,133
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271D01.bB6Ng01-271D01.g
ACCGA073341GA073342
length1,1831,036
definitionB6Ng01-271D01.b B6Ng01-271D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,221,131 - 13,222,379)(13,387,102 - 13,388,133)
sequence
gaattcatagtttaagactatcctctgatatatagggagttccatgccag
catgagtgacaggaagctctagctaaagaaagagggaagagaaaacagta
agcaagtggatggaagctgtcttaatgacttactgcagagaagaaaagca
atggtgttggggtattatttgtctccacagttcacttgtaaggatcagaa
ataaacctctgtcaagactctgagagtttattgttattttgcatgaacat
atttcttgactcatacacttatgtgaagttattcatatgaattatcttca
aataaaacattattgtggatagggaaagcatgcttggctagtattttaag
atacatgttcaattttattttaatatattaaaatttataatatggagtgt
tacattggtagaattgttttctatcctcaaggctctgtaatatagggacc
taaaataaaatttaacacatttgacatagcgatgtgaaaaactgcagggg
attatttttaaattttccagtgtcataggaaagtgatccctgctctaaca
tcttcacaaaaataaatggaacaaggaaccaatgagttatttaaaggact
cattaactttcatatgaccctatttgtaattgagacagttgtgtcctaga
tgtaccctccaagaatgatttatgaggtttccccgcactccaaattgact
gacaaaggggagaaaagtgtgctttaaccaaacctatgaggcccaggcaa
aagaggaggcatctgctaaagagctcatgatacagtgtaatccttagtat
ttcaaaacataattacttttcttaaaggatttaacattctcagttaataa
aaaggtaaattcatgaaaatattctgatttgttataagctgtagcaagtt
tagatgtaagatattttaacttattttccgggtgggaaatatactttctg
caagtgcattgcatattgcaaaatggtataagagaactactgttttattc
tgcattacatcccatctacccatgcaggttgatgtcagtctgttctattt
gttacaatatgtacctcattgcattaattgtaattatatcactctcaatt
tatttagggcattattgcattggtagtgatttcattttgactaataaaac
attcgttatattctggacctaacttgtagctat

gaattcaatttacaacattccgacaatgggtcatcattatttagttttat
agaaaggttaaaaaatttatttgctaacgtggttaaactaaagaagcctt
agtttgcgatgttcagaaaagtatacaatagggtgatgaaatgcccttta
atagaatttcattgcatataggtctgatagaactgagtttcatctgcaca
gttctctcaagctgaaagtcaggtgttgcacaatttaagaggtaaggcct
cttcttgtttaagtaggtgtgggaaaaatgtgtctcccttttcccaagag
gtcagtgggtgtgttggtacaagagctaggtttccagacaactactgtgc
agttgcagctgtcactagaaaagactgagagtgtatacaaacagaggacc
ttaaaacaatgatgggtgaggagaaggaggttatgtgttttccttcgcac
agtattatatatttataaatagacacaccaatacacagagagagtcacat
gtgcgtatatgagcaagcatgtatacacatgtatgcatatttatataaga
atgtatgtctgagtctgcttgcttctctgttgctatcattagaaataatg
accaagacagatgatagaaaggagagttcatttgggctatggtccagaga
gatggaagtctatcattccaggcaagtatggcgctagacagatactgtgg
ctagagcaagcagagagattgcttcttcaaactaaaatggaaaaaagaga
cagcaaaccaaaagtgacacagggccttaaagtattagaggcaggaccta
gtgatgtatttcctccagcaagtgtgctcttccctccaacaagggatact
cctccttcccccagcaagggtgctcctccttcccagcaagggtgctcctt
ctttccagcaagggtgctcctcctaagcctcccccaatagacacaagtag
ggacccaaatcttcacatctgaaacttgcgggtcattgtcacttaaccca
gcataatttccattgtacatggtgtatactttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13221131_13222379
seq2: B6Ng01-271D01.b_43_1225

seq1  GAATTCATAGTTTAAGACTATCCTCTGATATATAGGGAGTTCCATGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTTAAGACTATCCTCTGATATATAGGGAGTTCCATGCCAG  50

seq1  CATGAGTGACAGGAAGCTCTAGCTAAAGAAAGAGGGAAGAGAAAACAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGACAGGAAGCTCTAGCTAAAGAAAGAGGGAAGAGAAAACAGTA  100

seq1  AGCAAGTGGATGGAAGCTGTCTTAATGACTTACTGCAGAGAAGAAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGGATGGAAGCTGTCTTAATGACTTACTGCAGAGAAGAAAAGCA  150

seq1  ATGGTGTTGGGGTATTATTTGTCTCCACAGTTCACTTGTAAGGATCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTGGGGTATTATTTGTCTCCACAGTTCACTTGTAAGGATCAGAA  200

seq1  ATAAACCTCTGTCAAGACTCTGAGAGTTTATTGTTATTTTGCATGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTCTGTCAAGACTCTGAGAGTTTATTGTTATTTTGCATGAACAT  250

seq1  ATTTCTTGACTCATACACTTATGTGAAGTTATTCATATGAATTATCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGACTCATACACTTATGTGAAGTTATTCATATGAATTATCTTCA  300

seq1  AATAAAACATTATTGTGGATAGGGAAAGCATGCTTGGCTAGTATTTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACATTATTGTGGATAGGGAAAGCATGCTTGGCTAGTATTTTAAG  350

seq1  ATACATGTTCAATTTTATTTTAATATATTAAAATTTATAATATGGAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTTCAATTTTATTTTAATATATTAAAATTTATAATATGGAGTGT  400

seq1  TACATTGGTAGAATTGTTTTCTATCCTCAAGGCTCTGTAATATAGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGTAGAATTGTTTTCTATCCTCAAGGCTCTGTAATATAGGGACC  450

seq1  TAAAATAAAATTTAACACATTTGACATAGCGATGTGAAAAACTGCAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATTTAACACATTTGACATAGCGATGTGAAAAACTGCAGGGG  500

seq1  ATTATTTTTAAATTTTCCAGTGTCATAGGAAAGTGATCCCTGCTCTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTAAATTTTCCAGTGTCATAGGAAAGTGATCCCTGCTCTAACA  550

seq1  TCTTCACAAAAATAAATGGAACAAGGAACCAATGAGTTATTTAAAGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAAAAATAAATGGAACAAGGAACCAATGAGTTATTTAAAGGACT  600

seq1  CATTAACTTTCATATGACCCTATTTGTAATTGAGACAGTTGTGTCCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTTTCATATGACCCTATTTGTAATTGAGACAGTTGTGTCCTAGA  650

seq1  TGTACCCTCCAAGAATGATTTATGAGGTTTCCCCGCACTCCAAATTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCTCCAAGAATGATTTATGAGGTTTCCCCGCACTCCAAATTGACT  700

seq1  GACAAAGGGGAGAAAAGTGTGCTTTAACCAAACCTATGAGGCCCAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGGGAGAAAAGTGTGCTTTAACCAAACCTATGAGGCCCAGGCAA  750

seq1  AAGAGGAGGCATCTGCTAAAGAGCTCATGATACAGTGTAATCCTTAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGGCATCTGCTAAAGAGCTCATGATACAGTGTAATCCTTAGTAT  800

seq1  TTCAAAACATAATTACTTTTCTTAAAGGATTTAACATTCTCAGTTAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACATAATTACTTTTCTTAAAGGATTTAACATTCTCAGTTAATAA  850

seq1  AAAGGTAAATTCATGAAAATATTCTGATTTGTTATAAGCTGTAGCAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAATTCATGAAAATATTCTGATTTGTTATAAGCTGTAGCAAGTT  900

seq1  TAGATGTAAGATATTTTAACTTATTTTCCGGGT-GGAAATATACTTTCTG  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGATGTAAGATATTTTAACTTATTTTCCGGGTGGGAAATATACTTTCTG  950

seq1  CAAGTGCATTGCATATTGCAAAATGGTATAAGAGAACTTACTGTTTTATT  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAGTGCATTGCATATTGCAAAATGGTATAAGAGAAC-TACTGTTTTATT  999

seq1  CTGCATTACAATCCAATCTACCCCATGCAAGGTTGAATGTCAGTCTGTTC  1049
      ||||||||| |||| ||||| ||||||| |||||| ||||||||||||||
seq2  CTGCATTAC-ATCCCATCTA-CCCATGC-AGGTTG-ATGTCAGTCTGTTC  1045

seq1  TATTTTGTTACAATATGTACCTCATTTGCATAAATTGTAATTATATCACT  1099
      || ||||||||||||||||||||| |||||| ||||||||||||||||| 
seq2  TA-TTTGTTACAATATGTACCTCA-TTGCATTAATTGTAATTATATCAC-  1092

seq1  TCTCATTTTATTTAAGGGCATTATTTGCATTGGTAAGTGGGTTTTCACTT  1149
      ||||| ||||||| ||||||||| |||||||||||   | | ||||| ||
seq2  TCTCAATTTATTT-AGGGCATTA-TTGCATTGGTA---GTGATTTCATTT  1137

seq1  TGACTAATAAAAACACATTTCTGTTATATATTTGAAATAAATTTGTAAAG  1199
      |||||||||||   |||||   ||||||| | || |   || ||||  ||
seq2  TGACTAATAAA---ACATT--CGTTATAT-TCTGGACCTAACTTGT--AG  1179

seq1  TTATTTTGAGATAACATTAATATCATAATACCCCAAACACTTGTAGCTAT  1249
       |||                                              
seq2  CTAT----------------------------------------------  1183


seq1: chr5_13387102_13388133
seq2: B6Ng01-271D01.g_66_1101 (reverse)

seq1  CTGT-AAGTATACA-CATGTAC-ATGGAAATTATGCTGGTTTAAGTGACA  47
      |||| ||||||||| ||||||| |||||||||||||||| ||||||||| 
seq2  CTGTAAAGTATACACCATGTACAATGGAAATTATGCTGGGTTAAGTGAC-  49

seq1  AATGACCCGCAAAGTTTCAGATGTGAAGATTT-GGTTCCTACTTGGTGTC  96
      |||||||||| ||||||||||||||||||||| ||| ||||||| |||||
seq2  AATGACCCGC-AAGTTTCAGATGTGAAGATTTGGGTCCCTACTT-GTGTC  97

seq1  TATTGGGGGAGGCTTAGGAGGAGCACCCTTGCTGG-AAGGAGGAGCACCC  145
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  TATTGGGGGAGGCTTAGGAGGAGCACCCTTGCTGGAAAGAAGGAGCACCC  147

seq1  TTGCT-GGAAGGAGGAGCACCCTTGCTGGGGGAAGGAGGAGTAT-CCTTG  193
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGCTGGGAAGGAGGAGCACCCTTGCTGGGGGAAGGAGGAGTATCCCTTG  197

seq1  TTGGAGGGAAGAGCACACTTGCTGGAGGAAATACATCACTAGGTCCTGCC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGAAGAGCACACTTGCTGGAGGAAATACATCACTAGGTCCTGCC  247

seq1  TCTAATACTTTAAGGCCCTGTGTCACTTTTGGTTTGCTGTCTCTTTTTTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACTTTAAGGCCCTGTGTCACTTTTGGTTTGCTGTCTCTTTTTTC  297

seq1  CATTTTAGTTTGAAGAAGCAATCTCTCTGCTTGCTCTAGCCACAGTATCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGTTTGAAGAAGCAATCTCTCTGCTTGCTCTAGCCACAGTATCT  347

seq1  GTCTAGCGCCATACTTGCCTGGAATGATAGACTTCCATCTCTCTGGACCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCGCCATACTTGCCTGGAATGATAGACTTCCATCTCTCTGGACCA  397

seq1  TAGCCCAAATGAACTCTCCTTTCTATCATCTGTCTTGGTCATTATTTCTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAAATGAACTCTCCTTTCTATCATCTGTCTTGGTCATTATTTCTA  447

seq1  ATGATAGCAACAGAGAAGCAAGCAGACTCAGACATACATTCTTATATAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCAACAGAGAAGCAAGCAGACTCAGACATACATTCTTATATAAA  497

seq1  TATGCATACATGTGTATACATGCTTGCTCATATACGCACATGTGACTCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATACATGTGTATACATGCTTGCTCATATACGCACATGTGACTCTC  547

seq1  TCTGTGTATTGGTGTGTCTATTTATAAATATATAATACTGTGCGAAGGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATTGGTGTGTCTATTTATAAATATATAATACTGTGCGAAGGAA  597

seq1  AACACATAACCTCCTTCTCCTCACCCATCATTGTTTTAAGGTCCTCTGTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAACCTCCTTCTCCTCACCCATCATTGTTTTAAGGTCCTCTGTT  647

seq1  TGTATACACTCTCAGTCTTTTCTAGTGACAGCTGCAACTGCACAGTAGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACACTCTCAGTCTTTTCTAGTGACAGCTGCAACTGCACAGTAGTT  697

seq1  GTCTGGAAACCTAGCTCTTGTACCAACACACCCACTGACCTCTTGGGAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAACCTAGCTCTTGTACCAACACACCCACTGACCTCTTGGGAAA  747

seq1  AGGGAGACACATTTTTCCCACACCTACTTAAACAAGAAGAGGCCTTACCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACACATTTTTCCCACACCTACTTAAACAAGAAGAGGCCTTACCT  797

seq1  CTTAAATTGTGCAACACCTGACTTTCAGCTTGAGAGAACTGTGCAGATGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTGTGCAACACCTGACTTTCAGCTTGAGAGAACTGTGCAGATGA  847

seq1  AACTCAGTTCTATCAGACCTATATGCAATGAAATTCTATTAAAGGGCATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTTCTATCAGACCTATATGCAATGAAATTCTATTAAAGGGCATT  897

seq1  TCATCACCCTATTGTATACTTTTCTGAACATCGCAAACTAAGGCTTCTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCCTATTGTATACTTTTCTGAACATCGCAAACTAAGGCTTCTTT  947

seq1  AGTTTAACCACGTTAGCAAATAAATTTTTTAACCTTTCTATAAAACTAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACCACGTTAGCAAATAAATTTTTTAACCTTTCTATAAAACTAAA  997

seq1  TAATGATGACCCATTGTCGGAATGTTGTAAATTGAATTC  1032
      |||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGACCCATTGTCGGAATGTTGTAAATTGAATTC  1036


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