BAC Information

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BAC

Clone NameB6Ng01-271D23
Chromosome5 (Build37)
Map Location 64,133,402 - 64,250,082
singlet/doubletdoublet
Overlap gene3110047P20Rik, 0610040J01Rik
Upstream geneCentd1, LOC100042133
Downstream geneAA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271D23.bB6Ng01-271D23.g
ACCGA073385GA073386
length1,2101,148
definitionB6Ng01-271D23.b B6Ng01-271D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,133,402 - 64,134,186)(64,248,947 - 64,250,082)
sequence
gaattccacgcaaatcttacttggttgtcttatataaaccaatttctata
tttctatacaactggattggactttctaatatttcagtgaggatttttac
cttatagtcatcaattatataaatctataatttccttaggattttttgta
tagtttttgtacctgatttgtactgtgcttagagaaggtcctctctcctt
caaatttttggaagtgtttttgaagaatttattttaattcttctttaact
gtttgacagacattaccagcatgtccacctggaactgggtatttcctttc
agcaatttttaacacatcatttactatttgatctctccttaaagatacct
gtatgtagattatgtgttttttcttgagtcagcgctactaatttgtgtct
tgttggcaattttccaatctcaatctcatctcagttagctgactgacaca
cagttgtttctgatatattcctttgtgctcattatccctctagagtgagt
aacaataacatgtgacatctggtgttactggtttgagtctccttccttta
acaccactttaatttccactaacatgtcattttgttaaccttttcaataa
tgctttgttttgttggtcccctccatttttctagcttatacatttccatg
atgagctattatttctcacgttttgattacctatattgttcctgattgat
cttcatttttttcagtaccttaaaaaggaaattcagtcattgattttaaa
tgctttaatacagttttttttaactacaatgcttttttttttcttttttc
gtgatgctacctcgactgcctcccataacttcggcatactatatctccat
ttttatttgcctaaatttttatttcccttgcaatctctttcttgacctat
gtgccatttatagatcctttctcatttgtcatcatttgttattgttctct
tactagttatgttatggcgtgtacatctttatgtggtctgtcattcactg
tagtgctgtcctacagaacatgatttcacatccagtcagtgtagttagaa
gaggaagacagggtctggtgttgtgactgttcttgtttaatacaggtata
cagccaagagcattcattcatgcacgggagtgaatttggaagtgtgtttg
atgctttatttggacctgaatggctgaatgtcctgtttgggaggctgaag
aaattttctc

gaattctcttcctcaaaatgctatttgcaccctactgaggaaacagcaga
aaaacagtgtctgggagataataaatgtagtattcactttactcattccc
gcaagtgaattattattttgtgacaataatttttaaagtaattttccagt
gaagcttgaaaattaccacaaattagaataaacagttatgtattcttgga
cgagggtgtatattgacaaatatcatccttatttacttatttatttttct
tatttttgtgtgtattggtaggacaccaagtaaatgcagtggactgaaca
tgttaatcggacatttttttcctttactataagtagcttagggaaaccat
taaaagaaggaagggctcattttcactcatggtagcagagacttccagtc
agggctgcttggctctattgttctgcacgtgtagtgaggcagacatcagg
gaggacaaagttgctcctgagatggcagacaagaagcaaaagaaccatga
aggggtggggacaggtaggtttccaggatgagacagtgacttccttcctt
ctactgtgccttcaattttcaagttttccactcactcccgatgtactatc
atacaataaatccatcacagcattcattcattcattcattcattcattca
ttcattcattctcattccttaggttccccagtatgcagacaagttttttt
tttttttgacactttaacaatatgagatttattgactaccagttacacat
tgggaagctattttacaatctttaaaggtaaggtttgtttgtttgtttgt
tttttccttcagtaaatccatctaacagatgcagagctggagctggagag
aggaaatgctatcctcctcttcaatggtcaaggcaccaggtctacttata
ttagcccaaaccacaaacacagatactggactgtggtattatttcatgac
atctctagcttcattagtaaatgaatttcttcagttcccaatattaatta
ttttggagcactgtaaacatatggcttgatcatgggactcagatgttcag
taacggccacatggcagaggttgaactcatttcatttctacttacaggtg
gacgtctctaactagccgtgtccttcttccttgcatgttttatctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64133402_64134186
seq2: B6Ng01-271D23.b_456_1253

seq1  TCCAATCTCAATCTCATCTCAGTTAGCTGACTGACACACAGTTGTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTCAATCTCATCTCAGTTAGCTGACTGACACACAGTTGTTTCTG  50

seq1  ATATATTCCTTTGTGCTCATTATCCCTCTAGAGTGAGTAACAATAACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCCTTTGTGCTCATTATCCCTCTAGAGTGAGTAACAATAACATG  100

seq1  TGACATCTGGTGTTACTGGTTTGAGTCTCCTTCCTTTAACACCACTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTGGTGTTACTGGTTTGAGTCTCCTTCCTTTAACACCACTTTAA  150

seq1  TTTCCACTAACATGTCATTTTGTTAACCTTTTCAATAATGCTTTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTAACATGTCATTTTGTTAACCTTTTCAATAATGCTTTGTTTTG  200

seq1  TTGGTCCCCTCCATTTTTCTAGCTTATACATTTCCATGATGAGCTATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCCTCCATTTTTCTAGCTTATACATTTCCATGATGAGCTATTAT  250

seq1  TTCTCACGTTTTGATTACCTATATTGTTCCTGATTGATCTTCATTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACGTTTTGATTACCTATATTGTTCCTGATTGATCTTCATTTTTTT  300

seq1  CAGTACCTTAAAAAGGAAATTCAGTCATTGATTTTAAATGCTTTAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTTAAAAAGGAAATTCAGTCATTGATTTTAAATGCTTTAATACA  350

seq1  GTTTTTTTTAACTACAATGC-TTTTTTTTTCTTTTTTCGTGATGCTACCT  399
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTTTTTTTAACTACAATGCTTTTTTTTTTCTTTTTTCGTGATGCTACCT  400

seq1  CGACTGCCTCCCATAACTTCGGCATACTATATCTCCATTTTTATTTGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGCCTCCCATAACTTCGGCATACTATATCTCCATTTTTATTTGCCT  450

seq1  AAATTTTTATTTCCCTTGCAATCTCTTTCTTGACCTATGTGCCATTTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTATTTCCCTTGCAATCTCTTTCTTGACCTATGTGCCATTTATA  500

seq1  GATCCTTTCTCATTTGTCATCATTTGTTATTGTTCTCTTACTAGTTATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTCTCATTTGTCATCATTTGTTATTGTTCTCTTACTAGTTATGT  550

seq1  TATGGCGTGTACATCTTTATGTGGTCTGTCATTCACTGTAGTGCTGTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCGTGTACATCTTTATGTGGTCTGTCATTCACTGTAGTGCTGTCCT  600

seq1  ACAGAACATGATTTCACATCCAGCCAGTGTTAGTTAAGAAGAGGAAGACA  649
      ||||||||||||||||||||||| ||||| ||||| ||||||||||||||
seq2  ACAGAACATGATTTCACATCCAGTCAGTG-TAGTT-AGAAGAGGAAGACA  648

seq1  GGGTCT-GTG-TGTGACTGTTC-TGTT--ATACA-GTATACAAGCAAGAG  693
      |||||| ||| ||||||||||| ||||  ||||| |||||||  ||||||
seq2  GGGTCTGGTGTTGTGACTGTTCTTGTTTAATACAGGTATACAGCCAAGAG  698

seq1  CA-TCATTCATGCA-GTGA-TGAATTTG--AGTGTGTTTGATGCTTTATT  738
      || ||||||||||| | || ||||||||  ||||||||||||||||||||
seq2  CATTCATTCATGCACGGGAGTGAATTTGGAAGTGTGTTTGATGCTTTATT  748

seq1  --GA-CTG-ATGGCTGAAAATGTCCTGTTTTGGAGGCTGAAG-AATTTTC  783
        || ||| |||||||  |||||||||||| ||||||||||| |||||||
seq2  TGGACCTGAATGGCTG--AATGTCCTGTTTGGGAGGCTGAAGAAATTTTC  796

seq1  TC  785
      ||
seq2  TC  798


seq1: chr5_64248947_64250082
seq2: B6Ng01-271D23.g_63_1210 (reverse)

seq1  CTGAGATAAAACATGCA--GGAGAAGGACA--GCTAGTTTAGAGACGTCC  46
      |||||||||||||||||  | |||||||||  ||||| ||||||||||||
seq2  CTGAGATAAAACATGCAAGGAAGAAGGACACGGCTAG-TTAGAGACGTCC  49

seq1  A-CTGT-AGTAGGAATGAATTGAGTCCAAACTCTGCCATGTGCCTTTTAC  94
      | |||| ||||| |||||| ||||| ||| |||||||||||| |  ||||
seq2  ACCTGTAAGTAGAAATGAAATGAGTTCAACCTCTGCCATGTGGCCGTTAC  99

seq1  TG-ACATCTGAGT-CCATGATC-AGCCATATGTATTACAGTTGCTCC-AA  140
      || |||||||||| |||||||| |||||||||| |||||| |||||| ||
seq2  TGAACATCTGAGTCCCATGATCAAGCCATATGT-TTACAG-TGCTCCAAA  147

seq1  ATA--TTATATTGGG-ACTGAAGAATTTCATTTACTTAATGAAGCTAGAG  187
      |||  | |||||||| ||||||||| ||||||||| ||||||||||||||
seq2  ATAATTAATATTGGGAACTGAAGAAATTCATTTAC-TAATGAAGCTAGAG  196

seq1  ATGTCATGAAATAATACCACAGTCCAGTATCTGTGTTTGTGG-TTGGGCT  236
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGTCATGAAATAATACCACAGTCCAGTATCTGTGTTTGTGGTTTGGGCT  246

seq1  AATATAAGTAGACCTGGTGCCTTGACCATTGAAG-GGAGGATAGCATTTC  285
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATATAAGTAGACCTGGTGCCTTGACCATTGAAGAGGAGGATAGCATTTC  296

seq1  CTCTCTCCAGCTCCAGCTCTGCATCTGTTAGATGGATTTACTGAAGGAAA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCAGCTCCAGCTCTGCATCTGTTAGATGGATTTACTGAAGGAAA  346

seq1  AAACAAACAAACAAACAAACCTTACC-TTAAAGATTGTAAAATAGCTTCC  384
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACCTTACCTTTAAAGATTGTAAAATAGCTTCC  396

seq1  CAATGTGTAACTGGTAGTCAATAAATCTCATATTGTTAAAGTGTCAAAAA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTAACTGGTAGTCAATAAATCTCATATTGTTAAAGTGTCAAAAA  446

seq1  AAAAAAAAACTTGTCTGCATACTGGGGAACCTAAGGAATGAGAATGAATG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACTTGTCTGCATACTGGGGAACCTAAGGAATGAGAATGAATG  496

seq1  AATGAATGAATGAATGAATGAATGAATGAATGCTGTGATGGATTTATTGT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAATGAATGAATGAATGAATGAATGCTGTGATGGATTTATTGT  546

seq1  ATGATAGTACATCGGGAGTGAGTGGAAAACTTGAAAATTGAAGGCACAGT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTACATCGGGAGTGAGTGGAAAACTTGAAAATTGAAGGCACAGT  596

seq1  AGAAGGAAGGAAGTCACTGTCTCATCCTGGAAACCTACCTGTCCCCACCC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGGAAGTCACTGTCTCATCCTGGAAACCTACCTGTCCCCACCC  646

seq1  CTTCATGGTTCTTTTGCTTCTTGTCTGCCATCTCAGGAGCAACTTTGTCC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGTTCTTTTGCTTCTTGTCTGCCATCTCAGGAGCAACTTTGTCC  696

seq1  TCCCTGATGTCTGCCTCACTACACGTGCAGAACAATAGAGCCAAGCAGCC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATGTCTGCCTCACTACACGTGCAGAACAATAGAGCCAAGCAGCC  746

seq1  CTGACTGGAAGTCTCTGCTACCATGAGTGAAAATGAGCCCTTCCTTCTTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGAAGTCTCTGCTACCATGAGTGAAAATGAGCCCTTCCTTCTTT  796

seq1  TAATGGTTTCCCTAAGCTACTTATAGTAAAGGAAAAAAATGTCCGATTAA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTTCCCTAAGCTACTTATAGTAAAGGAAAAAAATGTCCGATTAA  846

seq1  CATGTTCAGTCCACTGCATTTACTTGGTGTCCTACCAATACACACAAAAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAGTCCACTGCATTTACTTGGTGTCCTACCAATACACACAAAAA  896

seq1  TAAGAAAAATAAATAAGTAAATAAGGATGATATTTGTCAATATACACCCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAATAAATAAGTAAATAAGGATGATATTTGTCAATATACACCCT  946

seq1  CGTCCAAGAATACATAACTGTTTATTCTAATTTGTGGTAATTTTCAAGCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAAGAATACATAACTGTTTATTCTAATTTGTGGTAATTTTCAAGCT  996

seq1  TCACTGGAAAATTACTTTAAAAATTATTGTCACAAAATAATAATTCACTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAAAATTACTTTAAAAATTATTGTCACAAAATAATAATTCACTT  1046

seq1  GCGGGAATGAGTAAAGTGAATACTACATTTATTATCTCCCAGACACTGTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAATGAGTAAAGTGAATACTACATTTATTATCTCCCAGACACTGTT  1096

seq1  TTTCTGCTGTTTCCTCAGTAGGGTGCAAATAGCATTTTGAGGAAGAGAAT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGTTTCCTCAGTAGGGTGCAAATAGCATTTTGAGGAAGAGAAT  1146

seq1  TC  1136
      ||
seq2  TC  1148


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