BAC Information

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BAC

Clone NameB6Ng01-271P03
Chromosome5 (Build37)
Map Location 59,807,078 - 59,808,261
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271P03.bB6Ng01-271P03.g
ACCGA073895GA073896
length1,1921,195
definitionB6Ng01-271P03.b B6Ng01-271P03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaaaaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaggagctaaagggatctgcaccctat
aggtggaacacattatgagctaccagtaccccgagctctgactctagctg
catatatatcaaagatggctagtcggcatcactggaaagagaggccatgg
actgcaacctttatatgtccagtacaggaataaccaaggcaaaaggatgg
tggtcagggatggggtcaagcacgtcctcagtccatccacta
gaattcaaatagttcaaaagcatattagtcaaatatgccaacattcccgc
ttatgcaggcagtgcattatctctgaagtcacaaacagctagagagccaa
tattcgcgacaaacactgtaagacaagtggtaaatttttaaacagggtaa
actcactgtagcctactttaggaacaacagaataaaattttcattaacac
tgtcacaaatcaagtctctagaattttctttagattatgacattaacagt
atttctcccaatgcctcatgattcaaaattttaagaagttgaaaatatac
taagtaattttctagaacataacattctacttttagagtagtcatttctg
cttaacaaaaacaggaatactttcacatgaatttgacataacacactact
acaattacttatatagatctggacattgttgtgtcttttaggtagcatag
attcaaaggaaaactgagtacttttcttccaactcagcctacacaagaac
tttaagtacaatgagagctcctcctctgggaggaggattccaagttagtt
ccagctccatacttctaaatcttgtgttgatattgagtgtttctaaacaa
ctgagagcaactgaacaactgtctggtattcttttgtgagttccctggag
tccactgaccaagaagtctaaatgagattgtgaaattcccaaaaatgtac
aatagaggaatttttaacacaggtttaaccaacacccatataagtggact
taagtactactcaataagggaaaatacatacctgattctatatcacagtc
aattacacaaggctggtgatgacatggaaccctgaggataaacgacaagt
cagtactatttctacatgcactctagatgttcatagtcatgcctccactc
cttatgaaggaagcttttatatttttagattttagccactattataattg
acaaactgtaaactcagagaacagtgacttaggatgtccagttctttttg
cttcatttccaccaccagccctacattcacaccataagaaattaacagaa
agatatgaggagccagaggatcagtcaactgttatggagaatagtgttct
ttttattatatgggaagccttacctataaaccctccacgcacacgatgat
aggccctcccacaggcctggacctatgaaacacccaggtcctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59807078_59808261
seq2: B6Ng01-271P03.g_65_1259

seq1  GAATTCAAATAGTTCAAAAGCATATTAGTCAAATATGCCAACATTCCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAGTTCAAAAGCATATTAGTCAAATATGCCAACATTCCCGC  50

seq1  TTATGCAGGCAGTGCATTATCTCTGAAGTCACAAACAGCTAGAGAGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGGCAGTGCATTATCTCTGAAGTCACAAACAGCTAGAGAGCCAA  100

seq1  TATTCGCGACAAACACTGTAAGACAAGTGGTAAATTTTTAAACAGGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGCGACAAACACTGTAAGACAAGTGGTAAATTTTTAAACAGGGTAA  150

seq1  ACTCACTGTAGCCTACTTTAGGAACAACAGAATAAAATTTTCATTAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGTAGCCTACTTTAGGAACAACAGAATAAAATTTTCATTAACAC  200

seq1  TGTCACAAATCAAGTCTCTAGAATTTTCTTTAGATTATGACATTAACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAAATCAAGTCTCTAGAATTTTCTTTAGATTATGACATTAACAGT  250

seq1  ATTTCTCCCAATGCCTCATGATTCAAAATTTTAAGAAGTTGAAAATATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCCAATGCCTCATGATTCAAAATTTTAAGAAGTTGAAAATATAC  300

seq1  TAAGTAATTTTCTAGAACATAACATTCTACTTTTAGAGTAGTCATTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATTTTCTAGAACATAACATTCTACTTTTAGAGTAGTCATTTCTG  350

seq1  CTTAACAAAAACAGGAATACTTTCACATGAATTTGACATAACACACTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAAAAACAGGAATACTTTCACATGAATTTGACATAACACACTACT  400

seq1  ACAATTACTTATATAGATCTGGACATTGTTGTGTCTTTTAGGTAGCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACTTATATAGATCTGGACATTGTTGTGTCTTTTAGGTAGCATAG  450

seq1  ATTCAAAGGAAAACTGAGTACTTTTCTTCCAACTCAGCCTACACAAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGGAAAACTGAGTACTTTTCTTCCAACTCAGCCTACACAAGAAC  500

seq1  TTTAAGTACAATGAGAGCTCCTCCTCTGGGAGGAGGATTCCAAGTTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTACAATGAGAGCTCCTCCTCTGGGAGGAGGATTCCAAGTTAGTT  550

seq1  CCAGCTCCATACTTCTAAATCTTGTGTTGATATTGAGTGTTTCTAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCATACTTCTAAATCTTGTGTTGATATTGAGTGTTTCTAAACAA  600

seq1  CTGAGAGCAACTGAACAACTGTCTGGTATTCTTTTGTGAGTTCCCTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCAACTGAACAACTGTCTGGTATTCTTTTGTGAGTTCCCTGGAG  650

seq1  TCCACTGACCAAGAAGTCTAAATGAGATTGTGAAATTCCCAAAAATGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGACCAAGAAGTCTAAATGAGATTGTGAAATTCCCAAAAATGTAC  700

seq1  AATAGAGGAATTTTTAACACAGGTTTAACCAACACCCATATAAGTGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGAATTTTTAACACAGGTTTAACCAACACCCATATAAGTGGACT  750

seq1  TAAGTACTACTCAATAAGGGAAAATACATACCTGATTCTATATCACAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACTACTCAATAAGGGAAAATACATACCTGATTCTATATCACAGTC  800

seq1  AATTACACAAGGCTGGTGATGACATGGAACCCTGAGGATAAACGACAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACAAGGCTGGTGATGACATGGAACCCTGAGGATAAACGACAAGT  850

seq1  CAGTACTATTTCTACATGCACTCTAGATGTTCATAGTCATGCCTCCACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTATTTCTACATGCACTCTAGATGTTCATAGTCATGCCTCCACTC  900

seq1  CTTATGAAGGAAGCTTTTATATTTTTAGATTTTAG-CACTATTATAATTG  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTATGAAGGAAGCTTTTATATTTTTAGATTTTAGCCACTATTATAATTG  950

seq1  ACAAACTGTAAACTCAGAGAACAGGTGACTTAGGAATGTCCAGTTCTTTT  999
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  ACAAACTGTAAACTCAGAGAACA-GTGACTTAGG-ATGTCCAGTTCTTTT  998

seq1  TGCTTCATTTCCACCA-CAGCCCTACATTCAACACCATAAGAAATTAACA  1048
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  TGCTTCATTTCCACCACCAGCCCTACATTC-ACACCATAAGAAATTAACA  1047

seq1  GAAAGATATGAGGAGCCAGAGGATCAGGTCAACTGTTAT-GAG-ATAGTG  1096
      |||||||||||||||||||||||||| |||||||||||| ||| ||||||
seq2  GAAAGATATGAGGAGCCAGAGGATCA-GTCAACTGTTATGGAGAATAGTG  1096

seq1  -TCTTTT--ATATAT-GGAAGCTTTAACTATAAAACCTC----AGCACGA  1138
       ||||||   ||||| |||||| ||| ||||||| ||||      |||||
seq2  TTCTTTTTATTATATGGGAAGCCTTACCTATAAACCCTCCACGCACACGA  1146

seq1  TGATAG---CTTCAACAAGCCCTGAACTATGAAAACACCAGGTCCTATC  1184
      ||||||   || | ||| |||  || ||||||||   ||||||||||||
seq2  TGATAGGCCCTCCCACAGGCCTGGACCTATGAAACACCCAGGTCCTATC  1195