BAC Information

Click to search

BAC

Clone NameB6Ng01-272C16
Chromosome5 (Build37)
Map Location 142,916,409 - 143,067,505
singlet/doubletdoublet
Overlap geneFoxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2
Upstream geneSdk1, LOC666727
Downstream geneWipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272C16.bB6Ng01-272C16.g
ACCGA074061GA074062
length550468
definitionB6Ng01-272C16.b B6Ng01-272C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,066,950 - 143,067,505)(142,916,409 - 142,916,882)
sequence
ctatttaattagctgtgtggctggtggctccgtagcagcacagatgtact
acccggggcttaatgatattcacaattgacatttttgaaaagaaaaccag
agtgcatgatgcatttcacacacaactcaacaggaggcagagacatcagt
gcttccaactatgctacattgatcggtggagataatggtcagctcttttt
gagcatcttgttgcccagcaacctcacatccactggtccctttggccatt
agttatcaagatgagaatcaattccttcagtcattagggcggagtagttt
cctgattaccccttccaatgttttctattaatgaagagaacctgcctgct
tccccagctgctgcctcccttacctaaagtcctctctcactgactatgtc
aaagtggctcgatccaagataaagccaagactgcattttgatgacaggcc
tcagagggaaacaaatcgattgggattgcatttggagtgtgcatatcctt
agatgtgggggatgtacagctctctgaatccctgggaggggaggggaagg

cattgagcttttgtaaagctcagcggccggccgctggaggttcgcctgcc
aagactttctcagtttgagtttctgtgtaggggtggagcccacgtgttta
caaacacgccctgcccttcctctcccaggcagcgggagccagggtggggc
aggcttggggaaagggtttgacttcccagcccgcagcagtgggccccgcc
ctgctcagtctgcttgcctaatttggtgagctttgctagcgggtccctat
tggccgacctgggcaccgaaggcttggggacctcccagctgtggctcctc
cctccatggagcggatcccagggttcggtacctttgcctcactccacccc
ccccccaccccccccccaccaggctggcttcagtttgttgggtggctcct
tatttcccagggcgggttgttccgctgtggttttgagttgtgtgtatgtt
gggtttttttgggggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_143066950_143067505
seq2: B6Ng01-272C16.b_49_604 (reverse)

seq1  CCTTCCCCTCCCCTCCCAGGGATTCAGAGAGCTGTACATCCCCCACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTCCCCTCCCAGGGATTCAGAGAGCTGTACATCCCCCACATCT  50

seq1  AAGGATATGCACACTCCAAATGCAATCCCAATCGATTTGTTTCCCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATGCACACTCCAAATGCAATCCCAATCGATTTGTTTCCCTCTGA  100

seq1  GGCCTGTCATCAAAATGCAGTCTTGGCTTTATCTTGGATCGAGCCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTCATCAAAATGCAGTCTTGGCTTTATCTTGGATCGAGCCACTTT  150

seq1  GACATAGTCAGTGAGAGAGGACTTTAGGTAAGGGAGGCAGCAGCTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTCAGTGAGAGAGGACTTTAGGTAAGGGAGGCAGCAGCTGGGGA  200

seq1  AGCAGGCAGGTTCTCTTCATTAATAGAAAACATTGGAAGGGGTAATCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGGTTCTCTTCATTAATAGAAAACATTGGAAGGGGTAATCAGG  250

seq1  AAACTACTCCGCCCTAATGACTGAAGGAATTGATTCTCATCTTGATAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTCCGCCCTAATGACTGAAGGAATTGATTCTCATCTTGATAACT  300

seq1  AATGGCCAAAGGGACCAGTGGATGTGAGGTTGCTGGGCAACAAGATGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCAAAGGGACCAGTGGATGTGAGGTTGCTGGGCAACAAGATGCTC  350

seq1  AAAAAGAGCTGACCATTATCTCCACCGATCAATGTAGCATAGTTGGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGCTGACCATTATCTCCACCGATCAATGTAGCATAGTTGGAAGC  400

seq1  ACTGATGTCTCTGCCTCCTGTTGAGTTGTGTGTGAAATGCATCATGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTCTCTGCCTCCTGTTGAGTTGTGTGTGAAATGCATCATGCACT  450

seq1  CTGGTTTTCTTTTCAAAAATGTCAATTGTGAATATCATTAAGCCCCGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTCTTTTCAAAAATGTCAATTGTGAATATCATTAAGCCCCGGGT  500

seq1  AGTACATCTGTGCTGCTACGGAGCCACCAGCCACACAGCTAATTAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCTGTGCTGCTACGGAGCCACCAGCCACACAGCTAATTAAATAG  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556

seq1: chr5_142916409_142916882
seq2: B6Ng01-272C16.g_68_541

seq1  GAATTCCATTGAGCTTTTGTAAAGCTCAGCGGCCGGCCGCTGGAGGTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGAGCTTTTGTAAAGCTCAGCGGCCGGCCGCTGGAGGTTCG  50

seq1  CCTGCCAAGACTTTCTCAGTTTGAGTTTCTGTGTAGGGGTGGAGCCCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAAGACTTTCTCAGTTTGAGTTTCTGTGTAGGGGTGGAGCCCACG  100

seq1  TGTTTACAAACACGCCCTGCCCTTCCTCTCCCAGGCAGCGGGAGCCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACAAACACGCCCTGCCCTTCCTCTCCCAGGCAGCGGGAGCCAGGG  150

seq1  TGGGGCAGGCTTGGGGAAAGGGTTTGACTTCCCAGCCCGCAGCAGTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGGCTTGGGGAAAGGGTTTGACTTCCCAGCCCGCAGCAGTGGGC  200

seq1  CCCGCCCTGCTCAGTCTGCTTGCCTAATTTGGTGAGCTTTGCTAGCGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCTGCTCAGTCTGCTTGCCTAATTTGGTGAGCTTTGCTAGCGGGT  250

seq1  CCCTATTGGCCGACCTGGGCACCGAAGGCTTGGGGACCTCCCAGCTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTGGCCGACCTGGGCACCGAAGGCTTGGGGACCTCCCAGCTGTGG  300

seq1  CTCCTCCCTCCATGGAGCGGATCCCAGGGTTCGGTACCTTTGCCTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTCCATGGAGCGGATCCCAGGGTTCGGTACCTTTGCCTCACTC  350

seq1  CACCCCCCCCCCACCCCCCCCCCACCAGGCTGGCTTCAGTTTGTTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCCCCCACCCCCCCCCCACCAGGCTGGCTTCAGTTTGTTGGGTG  400

seq1  GCTCCTTATTTCCCAGGGCGGGTTGTTCCGCTGTGGTTTTGAGTTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTATTTCCCAGGGCGGGTTGTTCCGCTGTGGTTTTGAGTTGTGTG  450

seq1  TATGTTGGGTTTTTTTGGGGGGGC  474
      ||||||||||||||||||||||||
seq2  TATGTTGGGTTTTTTTGGGGGGGC  474