BAC Information

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BAC

Clone NameB6Ng01-272D19
Chromosome5 (Build37)
Map Location 49,852,355 - 49,990,906
singlet/doubletdoublet
Overlap geneEG433885
Upstream geneKcnip4, LOC100041668, LOC100041659
Downstream geneLOC666223, Gpr125, EG637307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272D19.bB6Ng01-272D19.g
ACCGA074115GA074116
length1,133993
definitionB6Ng01-272D19.b B6Ng01-272D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,989,750 - 49,990,906)(49,852,355 - 49,853,354)
sequence
gaattccaaaataatgagattttagtacaaatgcagataggagtttctcg
ttagctttaaataatcctcaaggaattgtagtccctcagaagcactagtg
tagttgtgcaaatgtttgcagaatcttcttcaaagcaaagcttggaaagc
ttatgccattcagtcatttatttaaattgtgctaattcagtttgaagcac
agacactttccccccaaagatatagaagaattttaaaagactcgggttga
ttttagcaacagaatttccttctgtcttggagtagtgtatcttttaaggt
ggtctataacagggccactgaactacattacttgtctaatatagatatgc
agagataccaaataaagaatttagtagcattaaaaaatctttatagtaac
taaatgatgtttgcaggattcaaatttacactcaatggattcactttttt
ttaacctttatatcagaaaattacaatggctgtctttcaagtcatcaagg
ttcacattccaaggtgtgcttcaccttctaaggtctgcttcacagttaca
atacacagttataatcctgataatttgcaaatgattgagaaagaaatatc
caagttgttcttttgtctggataatttgaaagaaacaaattttcctaaac
tgaatgaatcagaaaactatattgaaggtagtaaagacagttcaaatatg
ggagagaaacaacattagacaaggcctgatgcttgacagtagggagaggg
aacttctagagctcgcctctaataggaagacaagacatcaagtgagaggg
atgggattgccattctacagtcacaactctgaaccataattgttcccgtc
tgaaagaattacagggatagaaatggagaggaatctgagtaaagaaggtc
cagcacaggcccaaagtgggatccagctccagggagggtgggtgttctaa
ggcatgacactattactgaggctatgagagctcacaggagagggtatcct
gtaggagaacagcagtctcatatctggaccctgagatccttcaaacatga
cataaacaggcagcatacatcagctgatatgagccccacacacatacgta
aggactctgggctggttcctccgagatgatgca

gaattcaaaggacagagactgcctcttaaaaggcagatctagagatgtgt
gcgtcctaatatgctgggatctgaatcacaaccaccccttttcatggaag
tttagaccccctttcccaccaagtttcaagccaggggacttttatcttta
ctcattcataacgtaatattgtacttttctaacccctcccctttaaatca
gtgtcttagctactgttctattacagtaaggagacaccatgactaagaca
actctttaaaagaaagcatttaatcaagggcttgcttacagtttcagagg
gttagttcttgatgatcatggtaaggagtgtgtcagcagggagtcagaca
tggaccttgaacagtagctgagtgtccatatgatccaaaatggtaggcag
aatgagattgtctgtgtgacagtaggcctctcatgggcctttgtaaacct
aaatctaacccccaatgacacttcctccaacaaaaccataacccctaacc
cttccccaaaagaaccaaaagttctaaaatgtcaaaaaaattttcagaat
tttttccttgccaaacgaaaatgttcatattatgctgtttttatcttttt
tttttttttaacaatttgatttccctacaggtctaatattttttcaatca
taacaaggttgacttttcagttaagtgtcagcatctgctttccctcctct
ttttttttttttttgtttttgtttttgtttttttttttttttgttttttt
ttgtttttttttggttttcaagaacagggtttctctgtatagccctggct
gtcctggaactcactctgtagaccaggctggtcttgaactcagaaaccca
cctgcctctgcctcccaagtgctcaaggcatgtgccacactgcccagcta
tcattgatggctagtcgcatcattgggaagagaggtccttggtcttgcaa
actttatatgcctcagtacaaggagcgtcagagtgggagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49989750_49990906
seq2: B6Ng01-272D19.b_46_1178 (reverse)

seq1  TGCATCATCTCTGAAAGAACACAGACCCAGAAGTCCTCTACTGTATGTGT  50
      ||||||||||| | | |||| ||| ||||| |||||| ||| ||||||||
seq2  TGCATCATCTC-GGAGGAAC-CAG-CCCAG-AGTCCT-TAC-GTATGTGT  44

seq1  GTTGGGGGCCTCATATCAGCTGATGTATGCTGCCTGTTTTATGGTCCAAT  100
      ||   ||| ||||||||||||||||||||||||||| ||||| |||  ||
seq2  GT---GGGGCTCATATCAGCTGATGTATGCTGCCTG-TTTAT-GTC--AT  87

seq1  GTTTGAGAGATCTCAGGGGTCCAGATTAATTGAGACTGCTGGTCCTCCTA  150
      ||||||  ||||||| ||||||||||    |||||||||| || ||||||
seq2  GTTTGAAGGATCTCA-GGGTCCAGAT---ATGAGACTGCT-GTTCTCCTA  132

seq1  CAGGATTACCCTTCTCCTTGTGAGCTCTCATAGCCTCAGTAATAGTGTCA  200
      ||||| ||||| ||||| ||||||||||||||||||||||||||||||||
seq2  CAGGA-TACCC-TCTCC-TGTGAGCTCTCATAGCCTCAGTAATAGTGTCA  179

seq1  TGCCTTAGAACACCCACCCTCCCCTGGAGCTGGATCCCACTTTGGGCCTG  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCCTTAGAACACCCACCCT-CCCTGGAGCTGGATCCCACTTTGGGCCTG  228

seq1  TTGCTGGACCTTCTTTTACTCAGATTCCTCTCCATTTCTATCCCTGTAAT  300
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -TGCTGGACCTTC-TTTACTCAGATTCCTCTCCATTTCTATCCCTGTAAT  276

seq1  TCTTTCAGACGGGAACAATTATGGTTCAGAGTTGTGACTGTAGAATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGACGGGAACAATTATGGTTCAGAGTTGTGACTGTAGAATGGCA  326

seq1  ATCCCATCCCTCTCACTTGATGTCTTGTCTTCCTATTAGAGGCGAGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCCCTCTCACTTGATGTCTTGTCTTCCTATTAGAGGCGAGCTCT  376

seq1  AGAAGTTCCCTCTCCCTACTGTCAAGCATCAGGCCTTGTCTAATGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCCCTCTCCCTACTGTCAAGCATCAGGCCTTGTCTAATGTTGTT  426

seq1  TCTCTCCCATATTTGAACTGTCTTTACTACCTTCAATATAGTTTTCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCATATTTGAACTGTCTTTACTACCTTCAATATAGTTTTCTGAT  476

seq1  TCATTCAGTTTAGGAAAATTTGTTTCTTTCAAATTATCCAGACAAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGTTTAGGAAAATTTGTTTCTTTCAAATTATCCAGACAAAAGAA  526

seq1  CAACTTGGATATTTCTTTCTCAATCATTTGCAAATTATCAGGATTATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGATATTTCTTTCTCAATCATTTGCAAATTATCAGGATTATAAC  576

seq1  TGTGTATTGTAACTGTGAAGCAGACCTTAGAAGGTGAAGCACACCTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTGTAACTGTGAAGCAGACCTTAGAAGGTGAAGCACACCTTGGA  626

seq1  ATGTGAACCTTGATGACTTGAAAGACAGCCATTGTAATTTTCTGATATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACCTTGATGACTTGAAAGACAGCCATTGTAATTTTCTGATATAA  676

seq1  AGGTTAAAAAAAAGTGAATCCATTGAGTGTAAATTTGAATCCTGCAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAAAAAAGTGAATCCATTGAGTGTAAATTTGAATCCTGCAAACA  726

seq1  TCATTTAGTTACTATAAAGATTTTTTAATGCTACTAAATTCTTTATTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTTACTATAAAGATTTTTTAATGCTACTAAATTCTTTATTTGG  776

seq1  TATCTCTGCATATCTATATTAGACAAGTAATGTAGTTCAGTGGCCCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGCATATCTATATTAGACAAGTAATGTAGTTCAGTGGCCCTGTT  826

seq1  ATAGACCACCTTAAAAGATACACTACTCCAAGACAGAAGGAAATTCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCACCTTAAAAGATACACTACTCCAAGACAGAAGGAAATTCTGTT  876

seq1  GCTAAAATCAACCCGAGTCTTTTAAAATTCTTCTATATCTTTGGGGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATCAACCCGAGTCTTTTAAAATTCTTCTATATCTTTGGGGGGAA  926

seq1  AGTGTCTGTGCTTCAAACTGAATTAGCACAATTTAAATAAATGACTGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGTGCTTCAAACTGAATTAGCACAATTTAAATAAATGACTGAAT  976

seq1  GGCATAAGCTTTCCAAGCTTTGCTTTGAAGAAGATTCTGCAAACATTTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAGCTTTCCAAGCTTTGCTTTGAAGAAGATTCTGCAAACATTTGC  1026

seq1  ACAACTACACTAGTGCTTCTGAGGGACTACAATTCCTTGAGGATTATTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTACACTAGTGCTTCTGAGGGACTACAATTCCTTGAGGATTATTTA  1076

seq1  AAGCTAACGAGAAACTCCTATCTGCATTTGTACTAAAATCTCATTATTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACGAGAAACTCCTATCTGCATTTGTACTAAAATCTCATTATTTT  1126

seq1  GGAATTC  1157
      |||||||
seq2  GGAATTC  1133


seq1: chr5_49852355_49853354
seq2: B6Ng01-272D19.g_64_1056

seq1  GAATTCAAAGGACAGAGACTGCCTCTTAAAAGGCAGATCTAGAGATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGACAGAGACTGCCTCTTAAAAGGCAGATCTAGAGATGTGT  50

seq1  GCGTCCTAATATGCTGGGATCTGAATCACAACCACCCCTTTTCATGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCTAATATGCTGGGATCTGAATCACAACCACCCCTTTTCATGGAAG  100

seq1  TTTAGACCCCCTTTCCCACCAAGTTTCAAGCCAGGGGACTTTTATCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACCCCCTTTCCCACCAAGTTTCAAGCCAGGGGACTTTTATCTTTA  150

seq1  CTCATTCATAACGTAATATTGTACTTTTCTAACCCCTCCCCTTTAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCATAACGTAATATTGTACTTTTCTAACCCCTCCCCTTTAAATCA  200

seq1  GTGTCTTAGCTACTGTTCTATTACAGTAAGGAGACACCATGACTAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTAGCTACTGTTCTATTACAGTAAGGAGACACCATGACTAAGACA  250

seq1  ACTCTTTAAAAGAAAGCATTTAATCAAGGGCTTGCTTACAGTTTCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTAAAAGAAAGCATTTAATCAAGGGCTTGCTTACAGTTTCAGAGG  300

seq1  GTTAGTTCTTGATGATCATGGTAAGGAGTGTGTCAGCAGGGAGTCAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTCTTGATGATCATGGTAAGGAGTGTGTCAGCAGGGAGTCAGACA  350

seq1  TGGACCTTGAACAGTAGCTGAGTGTCCATATGATCCAAAATGGTAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTGAACAGTAGCTGAGTGTCCATATGATCCAAAATGGTAGGCAG  400

seq1  AATGAGATTGTCTGTGTGACAGTAGGCCTCTCATGGGCCTTTGTAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATTGTCTGTGTGACAGTAGGCCTCTCATGGGCCTTTGTAAACCT  450

seq1  AAATCTAACCCCCAATGACACTTCCTCCAACAAAACCATAACCCCTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAACCCCCAATGACACTTCCTCCAACAAAACCATAACCCCTAACC  500

seq1  CTTCCCCAAAAGAACCAAAAGTTCTAAAATGTCAAAAAAATTTTCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAAAAGAACCAAAAGTTCTAAAATGTCAAAAAAATTTTCAGAAT  550

seq1  TTTTTCCTTGCCAAACGAAAATGTTCATATTATGCTGTTTTTATCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTGCCAAACGAAAATGTTCATATTATGCTGTTTTTATCTTTTT  600

seq1  TTTTTTTTTAACAATTTGATTTCCCTACAGGTCTAATATTTTTTCAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAACAATTTGATTTCCCTACAGGTCTAATATTTTTTCAATCA  650

seq1  TAACAAGGTTGACTTTTCAGTTAAGTGTCAGCATCTGCTTTCCCTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGTTGACTTTTCAGTTAAGTGTCAGCATCTGCTTTCCCTCCTCT  700

seq1  TTTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTTTGTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTTTTTTTGTTTTTTT  750

seq1  TTGTTTTTTTTTGTTTTTCAAG-ACAGGGTTTCTCTGTATAGCCCTGGCT  799
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  TTGTTTTTTTTTGGTTTTCAAGAACAGGGTTTCTCTGTATAGCCCTGGCT  800

seq1  GTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTTGAACTCAGAAACCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTTGAACTCAGAAACCCA  850

seq1  CCTGCCTCTGCCTCCCAAGTGCTCAAAGGCATGTGCCACCACTGCCCAGC  899
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  CCTGCCTCTGCCTCCCAAGTGCTC-AAGGCATGTGCCA-CACTGCCCAGC  898

seq1  TATCATTGATGGCTAGTCGGCCATCATTGGGAAGAGAGGTCCCTTGGTCT  949
      |||||||||||||||||||  ||||||||||||||||||| |||||||||
seq2  TATCATTGATGGCTAGTCG--CATCATTGGGAAGAGAGGT-CCTTGGTCT  945

seq1  TGCAAACTTTATATGCCCCAGTACAAGGGAGCGCCAAGAAGTGGGAGTGG  999
      ||||||||||||||||| |||||||| |||||| ||   |||||||||||
seq2  TGCAAACTTTATATGCCTCAGTACAA-GGAGCGTCA--GAGTGGGAGTGG  992

seq1  G  1000
      |
seq2  G  993


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