BAC Information

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BAC

Clone NameB6Ng01-272F01
Chromosome5 (Build37)
Map Location 15,026,797 - 15,027,535
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272F01.bB6Ng01-272F01.g
ACCGA074173GA074174
length743996
definitionB6Ng01-272F01.b B6Ng01-272F01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcatttattccctgatggcaaatcctacctatctctccatgag
atgaggctttgtctcacattaagaactgcagaatgcaatacatcaaaacc
ttgctgatctccatggtggtggtgcacaccacagcctcacggtgaacatc
tacactggcaggtttcagggtatgttgaagtagtccaccatgtcagtgta
acctgcaaagtgccatgagacaatactaatagaaatctgcaggattcctc
cacattagatttcactatggtcttcaatgtcattttgtaaagaaatacta
tgggttcacagatacacacacacacacacacacaaacatgaagaccagag
aactttatgggaggattgttctctctactatgtgcattccaaggaaaaaa
ttctggtttctaggcttgacagcaatgatgaatacctgctcaaccatgtc
attaactcatcaactgatcatctaaaccaaggaatttcataagctctata
tttgtatttaggttccctttctctctctctctgtttctctgtctgtctct
ctctttctgtctctctgtctctgtctctgtctctgtctctttctctctct
ctctctctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgga
gagtgtgtctttacaaaatacaaatacatatgtggatgcgcacgctctcc
ctcttacgttaaactcaaagcccacgtggaggagctagaaaaa

gaattcttgggcaacgctgggttctgcagactttggatacctgggtttgc
aacactggccgcccccctgtaccccctgaccaaagaaagtggagaattta
gatggacatcagaacatcagaaagcctttaaaaatattaaggaggccctg
ctgactgcgccagccttgacactgccagatctaaccaagcccttcatcct
ctatgttgatgagagggcaggggtggccagaggagttcttactcaggctc
tagggccgtgaaagaggccggtggcatatttgtctaagaagctggaccca
gtggccagcggatggcccacatgtttaaaggccgttgctacagtagccct
actcgttaaggatgctgacaaattaactctgggacagcaaataactgtgg
tagccccccactctcttgagagcattatccgtcagcccccagaccgatgg
atgacaaatgcctggatgactcactaccagaggctgctgctgactgaacg
ggtcatgtttgctcctcctgctattctcaacactgcctgcaaagtgatct
acctgaccagccgtggccaggtgttccaaactggtacacagacagaagga
gtttcctagtggaagtttttgtagataccttttcaggatgggtggaggcc
tacccaacaaaaaagaaactgccaatgtcgtggttaagaaaatcctagaa
gaaatttttcctcggtttggaatacctaaggtaatagggtctgacaatga
gcccacctttgttgcccaggtaagtcagggactggccatccaactgggga
ttgattaaaaattacattgtgtttatagaccccagagttcagctaggtag
aaataaaaaaaaaaaacttgactaaattaatcttagagaccggcgggaat
gactagacagccctccttccctttgctttgtccgtgtaggaacacaccag
aaaaatctaagctactccatatgaaatcctgtatggggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15026797_15027535
seq2: B6Ng01-272F01.b_47_789

seq1  GAATTCAGCATTTATTCCCTGATGGAAAATCCTACCTATCTCTCCATGAG  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAATTCAGCATTTATTCCCTGATGGCAAATCCTACCTATCTCTCCATGAG  50

seq1  ATGAGGCTTTGTCTCACATTAAGAACTGCAGAATGCAATACATCAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTTTGTCTCACATTAAGAACTGCAGAATGCAATACATCAAAACC  100

seq1  TTGCTGATCTCCATGGTGGTGGTGCACACCACAGCCTCACGGTGAACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATCTCCATGGTGGTGGTGCACACCACAGCCTCACGGTGAACATC  150

seq1  TACACTGGCAGGTTTCAGGGTATGTTGAAGTAGTCCACCATGTCAGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGCAGGTTTCAGGGTATGTTGAAGTAGTCCACCATGTCAGTGTA  200

seq1  ACCTGCAAAGTGCCATGAGACAATACTAATAGAAATCTGCAGGATTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAAGTGCCATGAGACAATACTAATAGAAATCTGCAGGATTCCTC  250

seq1  CACATTAGATTTCACTATGGTCTTCAATGTCATTTTGTAAAGAAATACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGATTTCACTATGGTCTTCAATGTCATTTTGTAAAGAAATACTA  300

seq1  TGGGTTCACAGAT------ACACACACACACACAAACATGAAGACCAGAG  344
      |||||||||||||      |||||||||||||||||||||||||||||||
seq2  TGGGTTCACAGATACACACACACACACACACACAAACATGAAGACCAGAG  350

seq1  AACTTTATGGGAGGATTGTTCTCTCTACTATGTGCATTCCAAGGAAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATGGGAGGATTGTTCTCTCTACTATGTGCATTCCAAGGAAAAAA  400

seq1  TTCTGGTTTCTAGGCTTGACAGCAATGATGAATACCTGCTCAACCATGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTCTAGGCTTGACAGCAATGATGAATACCTGCTCAACCATGTC  450

seq1  ATTAACTCATCAACTGATCATCTAAACCAAGGAATTTCATAAGCTCTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCATCAACTGATCATCTAAACCAAGGAATTTCATAAGCTCTATA  500

seq1  TTTGTATTTAGGTTCCCTTTCTCTCTCTCTCTGTTTCTCTGTCTGTCTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTAGGTTCCCTTTCTCTCTCTCTCTGTTTCTCTGTCTGTCTCT  550

seq1  CTCTTTCTGTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTTTCTCTCTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTTTCTCTCTCT  600

seq1  CTCTCTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCT  644
      |||||||||||  |||||||||||||||||||||||||||||||   | |
seq2  CTCTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG---CGT  647

seq1  GAGAGGCTCTGCCAGTGC-AAATACAAATACAGAGGTGGATGCTCTCAGT  693
      | |||  | || |  | | ||||||||||||| | |||||||| | |  |
seq2  G-GAGAGTGTGTCTTTACAAAATACAAATACATATGTGGATGCGCACGCT  696

seq1  CAGCC-ATTAGATTAAACACAATGCCCCAGTGGAGGAGCTAGAAAAA  739
      |  ||  |||  |||||| ||| ||||  ||||||||||||||||||
seq2  CTCCCTCTTACGTTAAACTCAAAGCCCACGTGGAGGAGCTAGAAAAA  743


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