BAC Information

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BAC

Clone NameB6Ng01-273O24
Chromosome5 (Build37)
Map Location 59,207,283 - 59,264,405
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273O24.bB6Ng01-273O24.g
ACCGA075376GA075377
length8591,130
definitionB6Ng01-273O24.b B6Ng01-273O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,207,283 - 59,208,138)(59,263,268 - 59,264,405)
sequence
gaattcactttgtagaccaggctggccttgaactcagaaatccgcctgcc
tctgcctcccgagtgctgggattaaagttgtgtgccactacgcccggctc
aaaatatatgttcttcacaaaataaaaggacaatatatttagagttttct
aaatgaaccagtgattgcatagaaaaggttgttttgttcatgcattatta
aattttctgaaccttgaactaaagcagtctccaagatcagagaaaggcac
atgtgatgtaaggttctctctagattttgaagtatatattcctagatgag
aaaaacataacatatgtgctttgcaaattaatctgttcgtagaggtaata
agatgggaatgtggataagaacagatttattatccacagaatttggcatc
tgtaatattaataaagataagtgggataatataaaatatttttactaaaa
tagcattttagtacaatgacatgtacatcacagttgggattaaagaatat
tatttctggtaagcatgtggtaaatatttttaaatattcttaagataaat
ttattcacattttaatatttaattgaagaaaaatttgcaaaatgaatgta
atcaactttcatatcaacttaaatataaaatttattaagatgatgcataa
ttattatatcaagctatatcatcatgggaggtagagggaggaggcacttg
ggagggggaaaatggggcaagatcaggtgtgggaggagacaggggagact
tacagagggtcaggaaattgaatagagaggtatagcagtgggggatgggg
gaaccaccatcaaagtcccaaatgccagaaatcacgaggcctcccagtaa
cacagtgaa

gaattccctgagagttcctccaatgacaagatgacagacacaaaatctcc
ttggaagaaatcagatgaacacagagcagagggtaagtcagctacatcag
aggaggggttcacatatgttctgctttatctctgggatgtgtttggaagg
gtgggagttataaaataaaatttcttttctgttttccagagtgggtgtga
aatattcccaataatgaaacaaatttagaccatcaagtttgagagacaac
attaaacaggtaaggacaatatacaattgccatttctataagaacatttt
atttttaattttgtgtgtgagttatttagctacaattgtgtcatgtgcat
gcatggtacctatggaggccataagaggaactcaggctacctgaaactgt
agttagaaatgattgtaagctgtcacattggcgctgaaatctatctcagg
aaaggccaaacatgcttttaaactttaagccattgagagtatattattat
aaagaaaaatatattgattttaaaattataccatttcaaaatctaataga
gttgttaaaaacaatcattgttaaactaaattttatgttattaagctaaa
gtttatataaaaagtacccaatagaacagtaaatagcagtatttaatatc
ttggattattatagtattttgaaatcttagcatgtaataataaaacatta
tattatgtgctattgtaaagataagaaaatatgactagttggcttgcatg
ttttttgttgaatattttgtgacaaaatttataagatttttttattttat
aatttttaaaatatattattcatataaattattgacttagacagtgagta
cgtccataacatccaggtaataagttcttgttacaaggtgaccaaataga
cattgaaaataataaaaaataagcattttaaaagcctcaaagggcatcta
ttaagacatttattagagccaccaaataccgcaaaggagaagtatgatct
atgaacttgagaatattttgtgagaaatcaaactttcttattgcttaggt
tctatgttaatttgaatatgttgctatccaaatggtagatatgcatcaac
aattctgaaacctggtcaactggttatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59207283_59208138
seq2: B6Ng01-273O24.b_45_903

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGTTGTGTGCCACTACGCCCGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAGTTGTGTGCCACTACGCCCGGCTC  100

seq1  AAAATATATGTTCTTCACAAAATAAAAGGACAATATATTTAGAGTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATGTTCTTCACAAAATAAAAGGACAATATATTTAGAGTTTTCT  150

seq1  AAATGAACCAGTGATTGCATAGAAAAGGTTGTTTTGTTCATGCATTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACCAGTGATTGCATAGAAAAGGTTGTTTTGTTCATGCATTATTA  200

seq1  AATTTTCTGAACCTTGAACTAAAGCAGTCTCCAAGATCAGAGAAAGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGAACCTTGAACTAAAGCAGTCTCCAAGATCAGAGAAAGGCAC  250

seq1  ATGTGATGTAAGGTTCTCTCTAGATTTTGAAGTATATATTCCTAGATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGTAAGGTTCTCTCTAGATTTTGAAGTATATATTCCTAGATGAG  300

seq1  AAAAACATAACATATGTGCTTTGCAAATTAATCTGTTCGTAGAGGTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATAACATATGTGCTTTGCAAATTAATCTGTTCGTAGAGGTAATA  350

seq1  AGATGGGAATGTGGATAAGAACAGATTTATTATCCACAGAATTTGGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGAATGTGGATAAGAACAGATTTATTATCCACAGAATTTGGCATC  400

seq1  TGTAATATTAATAAAGATAAGTGGGATAATATAAAATATTTTTACTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATTAATAAAGATAAGTGGGATAATATAAAATATTTTTACTAAAA  450

seq1  TAGCATTTTAGTACAATGACATGTACATCACAGTTGGGATTAAAGAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTTAGTACAATGACATGTACATCACAGTTGGGATTAAAGAATAT  500

seq1  TATTTCTGGTAAGCATGTGGTAAATATTTTTAAATATTCTTAAGATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGGTAAGCATGTGGTAAATATTTTTAAATATTCTTAAGATAAAT  550

seq1  TTATTCACATTTTAATATTTAATTGAAGAAAAATTTGCAAAATGAATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACATTTTAATATTTAATTGAAGAAAAATTTGCAAAATGAATGTA  600

seq1  ATCAACTTTCATATCAACTTAAATATAAAATTTATTAAGATGATGCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTTCATATCAACTTAAATATAAAATTTATTAAGATGATGCATAA  650

seq1  TTATTATATCAAGCTATATCATCATGGGAGGTAGAGGGAGGAGGCACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATCAAGCTATATCATCATGGGAGGTAGAGGGAGGAGGCACTTG  700

seq1  GGAGGGGGAAAATGGGGCAAGATCAGGTGTGGGAGGAGACAGGGGAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGAAAATGGGGCAAGATCAGGTGTGGGAGGAGACAGGGGAGACT  750

seq1  TACAGAGGGTCAGGAAATTGAATAGAGAGGTATAGCAGTGGGGGAT-GGG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACAGAGGGTCAGGAAATTGAATAGAGAGGTATAGCAGTGGGGGATGGGG  800

seq1  GAACCACCA-GAAAGTCCCAGATGCCAGGAAATCACGAGG-CTCCCAG-A  846
      |||||||||  ||||||||| |||||| |||||||||||| ||||||| |
seq2  GAACCACCATCAAAGTCCCAAATGCCA-GAAATCACGAGGCCTCCCAGTA  849

seq1  ACACAGTGAA  856
      ||||||||||
seq2  ACACAGTGAA  859


seq1: chr5_59263268_59264405
seq2: B6Ng01-273O24.g_65_1194 (reverse)

seq1  CAGATAA-CAGTTGA-CAAGTTTCAGATATGTTGATGCATTATCTACCAT  48
      ||||||| ||||||| || ||||||||  |||||||||| ||||||||||
seq2  CAGATAACCAGTTGACCAGGTTTCAGAATTGTTGATGCA-TATCTACCAT  49

seq1  TTGGATAGCCAACATATTCCAAATAAACATAGAACCTAAGGCAATAAAGA  98
      |||||||| ||||||||| ||||| |||||||||||||| |||||||  |
seq2  TTGGATAG-CAACATATT-CAAATTAACATAGAACCTAA-GCAATAAGAA  96

seq1  AGTTTGAATTTCTTCAC-AAATATCTCCAAGTTCATAGATCATACTTCTC  147
      |||||| ||||| |||| ||||||   |||||||||||||||||||||||
seq2  AGTTTG-ATTTC-TCACAAAATATTCTCAAGTTCATAGATCATACTTCTC  144

seq1  CCTTTTGC-GTATTTGGTGGCTCTTAATAAATGTCTTAATAGATGCCCTT  196
      |  ||||| |||||||||||||| |||||||||||||||||||||||| |
seq2  C--TTTGCGGTATTTGGTGGCTC-TAATAAATGTCTTAATAGATGCCC-T  190

seq1  TTGAGGCTTTTAAAATGCTTATTTTTTATTTATTTTCAATGTCTATTTGG  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGAGGCTTTTAAAATGCTTATTTTTTA-TTATTTTCAATGTCTATTTGG  239

seq1  TCACCTTGTAACAAGAACTTATTACCTGGATGTTATGGACGTACTCACTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGTAACAAGAACTTATTACCTGGATGTTATGGACGTACTCACTG  289

seq1  TCCTAAGTCAATAATTTATATGAATAATATATTTTAAAAATTATAAAATA  346
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTAAGTCAATAATTTATATGAATAATATATTTTAAAAATTATAAAATA  338

seq1  AAAAAATCTTATAAATTTTGTCACAAAATATTCAACAAAAAACATGCAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTTATAAATTTTGTCACAAAATATTCAACAAAAAACATGCAAG  388

seq1  CCAACTAGTCATATTTTCTTATCTTTACAATAGCACATAATATAATGTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAGTCATATTTTCTTATCTTTACAATAGCACATAATATAATGTTT  438

seq1  TATTATTACATGCTAAGATTTCAAAATACTATAATAATCCAAGATATTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTACATGCTAAGATTTCAAAATACTATAATAATCCAAGATATTAA  488

seq1  ATACTGCTATTTACTGTTCTATTGGGTACTTTTTATATAAACTTTAGCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTATTTACTGTTCTATTGGGTACTTTTTATATAAACTTTAGCTT  538

seq1  AATAACATAAAATTTAGTTTAACAATGATTGTTTTTAACAACTCTATTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATAAAATTTAGTTTAACAATGATTGTTTTTAACAACTCTATTAG  588

seq1  ATTTTGAAATGGTATAATTTTAAAATCAATATATTTTTCTTTATAATAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAATGGTATAATTTTAAAATCAATATATTTTTCTTTATAATAAT  638

seq1  ATACTCTCAATGGCTTAAAGTTTAAAAGCATGTTTGGCCTTTCCTGAGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCAATGGCTTAAAGTTTAAAAGCATGTTTGGCCTTTCCTGAGAT  688

seq1  AGATTTCAGCGCCAATGTGACAGCTTACAATCATTTCTAACTACAGTTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAGCGCCAATGTGACAGCTTACAATCATTTCTAACTACAGTTTC  738

seq1  AGGTAGCCTGAGTTCCTCTTATGGCCTCCATAGGTACCATGCATGCACAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCTGAGTTCCTCTTATGGCCTCCATAGGTACCATGCATGCACAT  788

seq1  GACACAATTGTAGCTAAATAACTCACACACAAAATTAAAAATAAAATGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAATTGTAGCTAAATAACTCACACACAAAATTAAAAATAAAATGTT  838

seq1  CTTATAGAAATGGCAATTGTATATTGTCCTTACCTGTTTAATGTTGTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAAATGGCAATTGTATATTGTCCTTACCTGTTTAATGTTGTCTC  888

seq1  TCAAACTTGATGGTCTAAATTTGTTTCATTATTGGGAATATTTCACACCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTGATGGTCTAAATTTGTTTCATTATTGGGAATATTTCACACCC  938

seq1  ACTCTGGAAAACAGAAAAGAAATTTTATTTTATAACTCCCACCCTTCCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGAAAACAGAAAAGAAATTTTATTTTATAACTCCCACCCTTCCAA  988

seq1  ACACATCCCAGAGATAAAGCAGAACATATGTGAACCCCTCCTCTGATGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCCAGAGATAAAGCAGAACATATGTGAACCCCTCCTCTGATGTA  1038

seq1  GCTGACTTACCCTCTGCTCTGTGTTCATCTGATTTCTTCCAAGGAGATTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTACCCTCTGCTCTGTGTTCATCTGATTTCTTCCAAGGAGATTT  1088

seq1  TGTGTCTGTCATCTTGTCATTGGAGGAACTCTCAGGGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTCATCTTGTCATTGGAGGAACTCTCAGGGAATTC  1130


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