BAC Information

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BAC

Clone NameB6Ng01-274D08
Chromosome5 (Build37)
Map Location 47,205,079 - 47,310,732
singlet/doubletdoublet
Overlap genenone
Upstream geneLcorl, EG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274D08.bB6Ng01-274D08.g
ACCGA075571GA075572
length1,1741,003
definitionB6Ng01-274D08.b B6Ng01-274D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,205,079 - 47,206,250)(47,310,186 - 47,310,732)
sequence
gaattctggtatgtgcatcctcccttcccatagacctatagaatcctctg
tgaagaatttcttctcatggtgaatccatgaatcatatgattataagacc
taataagggaggtgtagtatggtttcagctgccacaagcatattgacctt
gtgtctacattccagtgacaaagcaggttactagatgaagtttaatacag
gtatggtggcccccaagtggaggcactacagtccaaaagtaacaggagag
taggtcatggtagtataacccttgactccagaatttagagatagagcagg
aggattatgagtttgaagccattctggattcatagaaagtattacgtcag
ccagagctgcatagtgagaccttggtattagacaaaacagaacaagaaaa
caaacaaacgattcacagagaaaaagctggagaataatcatccaaatttt
tcttatgtcaatggacctcaagactgtgcccagatcaatgcctcagaaat
acctttaatgagaaaaacctctagatagtcaatcttaatatatttttaat
attatagataaatgtagatctaaaactgcatatagctgaaatctaaatat
aattatggactcattctctgagaactgatctacatgggcccaaccttgct
actcttttccattgtccacacaggtatgaagttctgttataatttctaac
acacaattttgaatgtcattaatgttctgaaagacttctaattatttctc
agttttggatgttaaagtttttagtatgggataaaaatcctttcgtaatc
ttctcccaattaatttttgtttttagctttattcagtcatccaacatgaa
cctatacttgaagcacaattaactctttaacatctctgtgcatgtctgta
tacatgtctgagcatctccttatggctttctatatattacatccctgtct
aagtttccctgagcagatttccctctcaaattctacctctgtttagtagt
cttgggcaaattgatctctgttttctctgaatcaatcaactcatgtatct
cacatgcatttgctaacagtacttcatgcttagtatcaaggactttaatt
atatacatattatttggatgactgttgaatcataaatgggccattagtac
ccaacacaaaccatttttaaatat

gaattccctggttgatagacaggacaatttagtgttttagtaaaaatatt
cattgtgaaatgagtttactaattatttcatctatctttctctgttttct
ttaattattgtgaagcaacactgtagaaagaattaatgagagttagaggg
aatggagacatcatggaaacaaggccttctaaacacagaagaacctacgt
acatatgaactcatactgaagcaacatgcacagagtctgcacaggtctgt
accacatggggaccttgagctgaaaggaaaaaaataatcatatcacccat
tcctaactcagaagctacctccaattcataaacacaaacaaaatttggtt
ttccctgggtggtggtagcacacgcctttaagctcctttaagcaattgag
gtagaggctacagatttcagtttgagatgatctcggtctacatagagaat
ttcaggtgctggagctatggcttagcagataagagcactgactgtgggtt
caaatcccaactactgcttgatgagttttaggatatccagggtagcacaa
agaaaccctgtatcgggaaaaataaagaaccaaaagaaaaaaagaggggt
gggaaatagttttctttgaggaagtttctctgaggaagtaaactactctt
aagggtaggatgcatgcctagcaatagatgccaacagaaaatgaattaaa
aggtattttggcagcttatttctctcatactgttatgtccaggtgtttta
tttttaatcttatttttaatttttatttgcttgcttgctacatgttttca
tgcatattatggcttcaggttttgtgtttttataggattaatgagtgtgt
gaaataattggcctctgtatctatatacagttcttgggccttttcttggg
ctcttctatgtctgtttgttttgtcctattctttgttgttttataagtaa
tttattaattttatgtgcattggggttgcacgcatatatattcttgtatg
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47205079_47206250
seq2: B6Ng01-274D08.b_45_1218

seq1  GAATTCTGGTATGTGCATCCTCCCTTCCCATAGACCTATAGAATCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTATGTGCATCCTCCCTTCCCATAGACCTATAGAATCCTCTG  50

seq1  TGAAGAATTTCTTCTCATGGTGAATCCATGAATCATATGATTATAAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATTTCTTCTCATGGTGAATCCATGAATCATATGATTATAAGACC  100

seq1  TAATAAGGGAGGTGTAGTATGGTTTCAGCTGCCACAAGCATATTGACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGGAGGTGTAGTATGGTTTCAGCTGCCACAAGCATATTGACCTT  150

seq1  GTGTCTACATTCCAGTGACAAAGCAGGTTACTAGATGAAGTTTAATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTACATTCCAGTGACAAAGCAGGTTACTAGATGAAGTTTAATACAG  200

seq1  GTATGGTGGCCCCCAAGTGGAGGCACTACAGTCCAAAAGTAACAGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTGGCCCCCAAGTGGAGGCACTACAGTCCAAAAGTAACAGGAGAG  250

seq1  TAGGTCATGGTAGTATAACCCTTGACTCCAGAATTTAGAGATAGAGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATGGTAGTATAACCCTTGACTCCAGAATTTAGAGATAGAGCAGG  300

seq1  AGGATTATGAGTTTGAAGCCATTCTGGATTCATAGAAAGTATTACGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATGAGTTTGAAGCCATTCTGGATTCATAGAAAGTATTACGTCAG  350

seq1  CCAGAGCTGCATAGTGAGACCTTGGTATTAGACAAAACAGAACAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTGCATAGTGAGACCTTGGTATTAGACAAAACAGAACAAGAAAA  400

seq1  CAAACAAACGATTCACAGAGAAAAAGCTGGAGAATAATCATCCAAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACGATTCACAGAGAAAAAGCTGGAGAATAATCATCCAAATTTT  450

seq1  TCTTATGTCAATGGACCTCAAGACTGTGCCCAGATCAATGCCTCAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTCAATGGACCTCAAGACTGTGCCCAGATCAATGCCTCAGAAAT  500

seq1  ACCTTTAATGAGAAAAACCTCTAGATAGTCAATCTTAATATATTTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAATGAGAAAAACCTCTAGATAGTCAATCTTAATATATTTTTAAT  550

seq1  ATTATAGATAAATGTAGATCTAAAACTGCATATAGCTGAAATCTAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGATAAATGTAGATCTAAAACTGCATATAGCTGAAATCTAAATAT  600

seq1  AATTATGGACTCATTCTCTGAGAACTGATCTACATGGGCCCAACCTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGACTCATTCTCTGAGAACTGATCTACATGGGCCCAACCTTGCT  650

seq1  ACTCTTTTCCATTGTCCACACAGGTATGAAGTTCTGTTATAATTTCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTCCATTGTCCACACAGGTATGAAGTTCTGTTATAATTTCTAAC  700

seq1  ACACAATTTTGAATGTCATTAATGTTCTGAAAGACTTCTAATTATTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTTTGAATGTCATTAATGTTCTGAAAGACTTCTAATTATTTCTC  750

seq1  AGTTTTGGATGTTAAAGTTTTTAGTATGGGATAAAAATCCTTTCGTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGATGTTAAAGTTTTTAGTATGGGATAAAAATCCTTTCGTAATC  800

seq1  TTCTCCCAATTAATTTTTGTTTTTAGCTTTATTCAGTCATCCAACATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAATTAATTTTTGTTTTTAGCTTTATTCAGTCATCCAACATGAA  850

seq1  CCTATACTTGAAGCACAATTAACTCTTTAACATCTCTGTGCATGTCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACTTGAAGCACAATTAACTCTTTAACATCTCTGTGCATGTCTGTA  900

seq1  TACATGTCTGAGCATCTCCTTATGGCTTTCTATATATTACATCCCTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTCTGAGCATCTCCTTATGGCTTTCTATATATTACATCCCTGTCT  950

seq1  AAGTTT-CCTGAGCAGA-TTCCCTCTCAAATTCTACCTCTGTTTAGTAGT  998
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGTTTCCCTGAGCAGATTTCCCTCTCAAATTCTACCTCTGTTTAGTAGT  1000

seq1  CTTGGCAAAATTGATCCTCTG-TTTCTCTGAATCAATCAACTCATGTATC  1047
      |||||  |||||||| ||||| ||||||||||||||||||||||||||||
seq2  CTTGGGCAAATTGAT-CTCTGTTTTCTCTGAATCAATCAACTCATGTATC  1049

seq1  TCACATGCATTTGCT-ACAGTACTCCAATGCTTAGTATCAAGGACTTT-A  1095
      ||||||||||||||| |||||||| | ||||||||||||||||||||| |
seq2  TCACATGCATTTGCTAACAGTACTTC-ATGCTTAGTATCAAGGACTTTAA  1098

seq1  TTATATACCATATTTATTTGATTGCCCTGTTTGAATCATAAAGTGGGCAT  1145
      ||||||| |||| |||||||  ||  ||| |||||||||||| |||||  
seq2  TTATATA-CATA-TTATTTGGATG-ACTG-TTGAATCATAAA-TGGGCCA  1143

seq1  TTAATACAC-ACACAAACC---TTTTAATAT  1172
      ||| ||| | |||||||||   ||| |||||
seq2  TTAGTACCCAACACAAACCATTTTTAAATAT  1174


seq1: chr5_47310186_47310732
seq2: B6Ng01-274D08.g_63_609 (reverse)

seq1  TGCTACCCTGGATATCCTAAAACTCATCAAGCAGTAGTTGGGATTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCCTGGATATCCTAAAACTCATCAAGCAGTAGTTGGGATTTGAAC  50

seq1  CCACAGTCAGTGCTCTTATCTGCTAAGCCATAGCTCCAGCACCTGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCAGTGCTCTTATCTGCTAAGCCATAGCTCCAGCACCTGAAATT  100

seq1  CTCTATGTAGACCGAGATCATCTCAAACTGAAATCTGTAGCCTCTACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTAGACCGAGATCATCTCAAACTGAAATCTGTAGCCTCTACCTC  150

seq1  AATTGCTTAAAGGAGCTTAAAGGCGTGTGCTACCACCACCCAGGGAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTAAAGGAGCTTAAAGGCGTGTGCTACCACCACCCAGGGAAAAC  200

seq1  CAAATTTTGTTTGTGTTTATGAATTGGAGGTAGCTTCTGAGTTAGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTGTTTGTGTTTATGAATTGGAGGTAGCTTCTGAGTTAGGAATG  250

seq1  GGTGATATGATTATTTTTTTCCTTTCAGCTCAAGGTCCCCATGTGGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATGATTATTTTTTTCCTTTCAGCTCAAGGTCCCCATGTGGTACA  300

seq1  GACCTGTGCAGACTCTGTGCATGTTGCTTCAGTATGAGTTCATATGTACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGCAGACTCTGTGCATGTTGCTTCAGTATGAGTTCATATGTACG  350

seq1  TAGGTTCTTCTGTGTTTAGAAGGCCTTGTTTCCATGATGTCTCCATTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTTCTGTGTTTAGAAGGCCTTGTTTCCATGATGTCTCCATTCCC  400

seq1  TCTAACTCTCATTAATTCTTTCTACAGTGTTGCTTCACAATAATTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCTCATTAATTCTTTCTACAGTGTTGCTTCACAATAATTAAAGA  450

seq1  AAACAGAGAAAGATAGATGAAATAATTAGTAAACTCATTTCACAATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGAAAGATAGATGAAATAATTAGTAAACTCATTTCACAATGAAT  500

seq1  ATTTTTACTAAAACACTAAATTGTCCTGTCTATCAACCAGGGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTAAAACACTAAATTGTCCTGTCTATCAACCAGGGAATTC  547


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