BAC Information

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BAC

Clone NameB6Ng01-274H18
Chromosome5 (Build37)
Map Location 121,631,516 - 121,752,787
singlet/doubletdoublet
Overlap genePtpn11, Rpl6, LOC100039686, EG545802, AU042671
Upstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299
Downstream geneTrafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274H18.bB6Ng01-274H18.g
ACCGA075774GA075775
length1,141888
definitionB6Ng01-274H18.b B6Ng01-274H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,751,650 - 121,752,787)(121,631,516 - 121,632,394)
sequence
gaattcactctgcccacagcagggttatggtcagtacctgagcgcggact
gtgcaagcaaaaccccacatggctttgtcaggagtgttgtgttcacggcc
acttctcatttcaaaggagaaggtgactgtatcgccttcaaccttaagat
ttaagggggaggaggaaatgaacttttaaaaaaagtcaaacaatttccaa
gagagcaatatatttcagagattggctgattgattgattgctttatttgt
ttttatttgattttttgagatggggtctctgtgcagcctggctgtctgag
aactcacagagatccatctgctctgctccctcccttgtctttctccaagc
ccactgtgtcagtgacaaggcaaagagcagcagctgtggacttggctcag
ccagacaccccaggcagtgactgtcactggccagctaaagtaggtacact
gtatttgcaactcacaggttcaggaaaacactttaaaacattaattcaaa
acttttaaactgcagtgttctatggtcaatgtccagaaaaggaccctggg
aaaactagcagccccacccccaagaaatagttctgacaacccagtgacca
caaagaaccctgtggatggattgaagctccagtgaggacaggggtctgat
gtcctacaagcaaaaggaaggtaattctaaatagaagtgggaaggcaaca
gccataccaatgtggccctaactagctaactatgtgcctgtctaactgtg
aactataggcctagcaatgtggcaataactaattcaagtcccattgcaaa
tgcttgctgggttacacttagcctcaagcccattaagaacctacgaacac
cttccttttttctagaaagaagttgtgacttgatcccataccttcaccaa
gtccttcggccagccagttcctaagacactccgggctgccatatcccaga
gtgttgcctccatactcagcaacctttcctactgtttgtgttaggcccgc
gtaaatcaccaactttcaaaaacagaaaaatagatcgttagactgtaaaa
gaaaaacaaaacacatctacaataaagagcttgcaaaaaaacattttgta
aaaaaaaacatttgtaaaatacattttatagccagaccctg
gaattctcttccacaaagccaacatgtatatatatccattttcattcatt
atcatgagctgtacttttataaaattaaatatgcagagtaaggctgaaat
gctagattatcctctgggcctacacactcagacaaggaaggagaagaaag
aatgcagatctgaagtttgagttggttttgtttggggggtttgtctgttt
gtttgttgagactttatttttgttttatgtatgggatattttgcctgaag
tgcctggggactgtggagaggaaggctcaggaagaggatgttgatcgcct
agaactggagttactgaccatggtggagttagccaccaagagtgtgcgta
cagtcctctgcaagagtaacaagtgcttttaaccactaagctggctctcc
agccccaagttttctcaaggtacaatctaactggaacagagatactttaa
cgtgtataacatcagtaacaaagccgggggttgtttattcccagacagct
agggctgcacagaaagtcacctcctctcaggaggagaaaaaggaaatgta
cagcatgtgacatattcctgtattcccagctattaggaggttgaggcagg
aggactgtgagttcaaggccagcctgggctacataaaggtaaaggtcacc
ctgggctacataaactgtgccagggcccacctgaaaaaacacggtgagat
cctgtctccaactaaaattttagagccaattatatctgtaacgccagtcc
cagtgagatccaacgccctgcttttggcgtcctcagaggcacacagtaca
tagctatacatacaaacagaaagttcatacacataaaaataaatcacaat
tttgttaaacccttactaaaatttggagccacacatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121751650_121752787
seq2: B6Ng01-274H18.b_49_1189 (reverse)

seq1  CAGGGTCTGGCTAT-AAATGTATTTTTTACAAATG-TTTTTTTTAC-AAA  47
      |||||||||||||| |||||||  ||||||||||| |||||||||| |||
seq2  CAGGGTCTGGCTATAAAATGTA--TTTTACAAATGTTTTTTTTTACAAAA  48

seq1  TGTTTTTTTGCAGCCTCTTTATTTGTAGATGTTGTTTTTGTTTTTCTTTT  97
      ||||||||||||  ||||||| ||||||||||   |||||||||||||||
seq2  TGTTTTTTTGCAAGCTCTTTA-TTGTAGATGT--GTTTTGTTTTTCTTTT  95

seq1  ACAGTCTAACGGTCTA-TTTTCTGTTTT--GAAGTTGGTGATTTACGCGG  144
      ||||||||||| |||| |||||||||||   ||||||||||||||||| |
seq2  ACAGTCTAACGATCTATTTTTCTGTTTTTGAAAGTTGGTGATTTACGC-G  144

seq1  GGCCTAACACAAACAGTAGG-AAGGTTGCTGAGTATGGAGGCAACACTCT  193
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCCTAACACAAACAGTAGGAAAGGTTGCTGAGTATGGAGGCAACACTCT  194

seq1  GGGATATGGCAG-CCGGAGTGTCTTAGGAACTGGCTGGCCGAAGGACTTG  242
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGATATGGCAGCCCGGAGTGTCTTAGGAACTGGCTGGCCGAAGGACTTG  244

seq1  GTGAAGGTATGGGATCAAGTCACAACTTCTTTCTAG-AAAAAGGAAGGTG  291
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGAAGGTATGGGATCAAGTCACAACTTCTTTCTAGAAAAAAGGAAGGTG  294

seq1  TTCGTAGGTTCTTAATGGGCTTGAGGCTAAGTGTAACCCAGCAAGCATTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAGGTTCTTAATGGGCTTGAGGCTAAGTGTAACCCAGCAAGCATTT  344

seq1  GCAATGGGACTTGAATTAGTTATTGCCACATTGCTAGGCCTATAGTTCAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGACTTGAATTAGTTATTGCCACATTGCTAGGCCTATAGTTCAC  394

seq1  AGTTAGACAGGCACATAGTTAGCTAGTTAGGGCCACATTGGTATGGCTGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGACAGGCACATAGTTAGCTAGTTAGGGCCACATTGGTATGGCTGT  444

seq1  TGCCTTCCCACTTCTATTTAGAATTACCTTCCTTTTGCTTGTAGGACATC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCCACTTCTATTTAGAATTACCTTCCTTTTGCTTGTAGGACATC  494

seq1  AGACCCCTGTCCTCACTGGAGCTTCAATCCATCCACAGGGTTCTTTGTGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTGTCCTCACTGGAGCTTCAATCCATCCACAGGGTTCTTTGTGG  544

seq1  TCACTGGGTTGTCAGAACTATTTCTTGGGGGTGGGGCTGCTAGTTTTCCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGTTGTCAGAACTATTTCTTGGGGGTGGGGCTGCTAGTTTTCCC  594

seq1  AGGGTCCTTTTCTGGACATTGACCATAGAACACTGCAGTTTAAAAGTTTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTTTTCTGGACATTGACCATAGAACACTGCAGTTTAAAAGTTTT  644

seq1  GAATTAATGTTTTAAAGTGTTTTCCTGAACCTGTGAGTTGCAAATACAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATGTTTTAAAGTGTTTTCCTGAACCTGTGAGTTGCAAATACAGT  694

seq1  GTACCTACTTTAGCTGGCCAGTGACAGTCACTGCCTGGGGTGTCTGGCTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTACTTTAGCTGGCCAGTGACAGTCACTGCCTGGGGTGTCTGGCTG  744

seq1  AGCCAAGTCCACAGCTGCTGCTCTTTGCCTTGTCACTGACACAGTGGGCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTCCACAGCTGCTGCTCTTTGCCTTGTCACTGACACAGTGGGCT  794

seq1  TGGAGAAAGACAAGGGAGGGAGCAGAGCAGATGGATCTCTGTGAGTTCTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGACAAGGGAGGGAGCAGAGCAGATGGATCTCTGTGAGTTCTC  844

seq1  AGACAGCCAGGCTGCACAGAGACCCCATCTCAAAAAATCAAATAAAAACA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCAGGCTGCACAGAGACCCCATCTCAAAAAATCAAATAAAAACA  894

seq1  AATAAAGCAATCAATCAATCAGCCAATCTCTGAAATATATTGCTCTCTTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCAATCAATCAATCAGCCAATCTCTGAAATATATTGCTCTCTTG  944

seq1  GAAATTGTTTGACTTTTTTTAAAAGTTCATTTCCTCCTCCCCCTTAAATC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTTTGACTTTTTTTAAAAGTTCATTTCCTCCTCCCCCTTAAATC  994

seq1  TTAAGGTTGAAGGCGATACAGTCACCTTCTCCTTTGAAATGAGAAGTGGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTGAAGGCGATACAGTCACCTTCTCCTTTGAAATGAGAAGTGGC  1044

seq1  CGTGAACACAACACTCCTGACAAAGCCATGTGGGGTTTTGCTTGCACAGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACACAACACTCCTGACAAAGCCATGTGGGGTTTTGCTTGCACAGT  1094

seq1  CCGCGCTCAGGTACTGACCATAACCCTGCTGTGGGCAGAGTGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCTCAGGTACTGACCATAACCCTGCTGTGGGCAGAGTGAATTC  1141

seq1: chr5_121631516_121632394
seq2: B6Ng01-274H18.g_66_953

seq1  GAATTCTCTTCCACAAAGCCAACATGTATATATATCCATTTTCATTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCACAAAGCCAACATGTATATATATCCATTTTCATTCATT  50

seq1  ATCATGAGCTGTACTTTTATAAAATTAAATATGCAGAGTAAGGCTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGCTGTACTTTTATAAAATTAAATATGCAGAGTAAGGCTGAAAT  100

seq1  GCTAGATTATCCTCTGGGCCTACACACTCAGACAAGGAAGGAGAAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATTATCCTCTGGGCCTACACACTCAGACAAGGAAGGAGAAGAAAG  150

seq1  AATGCAGATCTGAAGTTTGAGTTGGTTTTGTTTGGGGGGTTTGTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGATCTGAAGTTTGAGTTGGTTTTGTTTGGGGGGTTTGTCTGTTT  200

seq1  GTTTGTTGAGACTTTATTTTTGTTTTATGTATGGGATATTTTGCCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGAGACTTTATTTTTGTTTTATGTATGGGATATTTTGCCTGAAG  250

seq1  TGCCTGGGGACTGTGGAGAGGAAGGCTCAGGAAGAGGATGTTGATCGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGGACTGTGGAGAGGAAGGCTCAGGAAGAGGATGTTGATCGCCT  300

seq1  AGAACTGGAGTTACTGACCATGGTGGAGTTAGCCACCAAGAGTGTGCGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGAGTTACTGACCATGGTGGAGTTAGCCACCAAGAGTGTGCGTA  350

seq1  CAGTCCTCTGCAAGAGTAACAAGTGCTTTTAACCACTAAGCTGGCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCTGCAAGAGTAACAAGTGCTTTTAACCACTAAGCTGGCTCTCC  400

seq1  AGCCCCAAGTTTTCTCAAGGTACAATCTAACTGGAACAGAGATACTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAAGTTTTCTCAAGGTACAATCTAACTGGAACAGAGATACTTTAA  450

seq1  CGTGTATAACATCAGTAACAAAGCCGGGGGTTGTTTATTCCCAGACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATAACATCAGTAACAAAGCCGGGGGTTGTTTATTCCCAGACAGCT  500

seq1  AGGGCTGCACAGAAAGTCACCTCCTCTCAGGAGGAGAAAAAGGAAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGCACAGAAAGTCACCTCCTCTCAGGAGGAGAAAAAGGAAATGTA  550

seq1  CAGCATGTGACATATTCCTGTATTCCCAGCTATTAGGAGGTTGAGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTGACATATTCCTGTATTCCCAGCTATTAGGAGGTTGAGGCAGG  600

seq1  AGGACTGTGAGTTCAAGGCCAGCCTGGGCTACATAAAGGTAAAGGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTGAGTTCAAGGCCAGCCTGGGCTACATAAAGGTAAAGGTCACC  650

seq1  CTGGGCTACATAAACTGTGCCA-GGCCCACCTG-AAAAACACGGTGAGAT  698
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  CTGGGCTACATAAACTGTGCCAGGGCCCACCTGAAAAAACACGGTGAGAT  700

seq1  CCTGTCTCCAACTAAAA-TTTAGAGCCAA-TATATCTGTAACGCCAGTCC  746
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  CCTGTCTCCAACTAAAATTTTAGAGCCAATTATATCTGTAACGCCAGTCC  750

seq1  CAG-GAGATCCAACGCCCTGC-TTTGGCGTCCTCAGAGGCACACAGTACA  794
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGTGAGATCCAACGCCCTGCTTTTGGCGTCCTCAGAGGCACACAGTACA  800

seq1  TAGCTATACATACAAACAGAAAGTTCATACACATAAAAATAAATAAC-AT  843
      |||||||||||||||||||||||||||||||||||||||||||| || ||
seq2  TAGCTATACATACAAACAGAAAGTTCATACACATAAAAATAAATCACAAT  850

seq1  TTTGT--AAACCTTACTAAAATTTGGAGCCACACATGG  879
      |||||  || ||||||||||||||||||||||||||||
seq2  TTTGTTAAACCCTTACTAAAATTTGGAGCCACACATGG  888