BAC Information

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BAC

Clone NameB6Ng01-274K23
Chromosome5 (Build37)
Map Location 5,916,193 - 5,985,987
singlet/doubletdoublet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274K23.bB6Ng01-274K23.g
ACCGA075924GA075925
length2331,131
definitionB6Ng01-274K23.b B6Ng01-274K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,916,193 - 5,916,426)(5,984,850 - 5,985,987)
sequence
aatactcttcaatctcaaaagctatttacttattattgtcctataacttt
aaataggttacacatggctaactttgtcaacttgacacaacctagaatca
tgtggggaaggactctcaatggagaggattgtctataataggttggtgtg
tgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtatgtgtgtggatgtgtg
tgtgtgctctaatgacaattccctaggtaggaa
gaattctttggactggatttatggtctcagcttaacttcttcctcagagg
aatactttggagacaaagtctctgacaagtgtgctttgtgaaaaaggcac
ctctgcctccacacttccttgcacaaagtgaactcccaacactttgctct
agctaatagttcaagggtcattatttcttgctgccgttttatgaacagaa
aggctttctgccttagactctgtcgacctgaggtaattcttgaatgtata
gtctcttctcattttacttctctgggctcgagactgattaatacctactt
ggaaaatcctaaaatgtagctgcatgcattattaataacatcattaggaa
gtaccatgcatttgcatctggatgagaatattggcaaaaaaaataaaaaa
agaaagaaaaaaaagggaaatcaaaataatgattctcggtggtttaaaga
agttccattggattcaatgtacacctgatgattatagtgattctcggtgt
ttttaaggagttccactggactcaatgcatacatgatgattacaaatcct
cttcacagttcacaagttgcacttcagctctttctcctactcacacctga
ttaaccccatgaccttcttttaatagcaggtgattcatcgtgatttactt
ttgtaaattactaatgaaaaagaaacttttagctttaaaatgcctgtgtt
ttacaaaaatgtaacttttacagatgtaaaaatattttggtattttactc
aaaagtggtatactgtctatatttagtaaaaatatctgatttttcaccac
ttataggaagaattttaaaaataagcatctagttaactccaaaacctgaa
aacatactacagaagaacaaaaaagtcatgttaacttatagatacttgat
ttttattcttatttatatttataatctctttttacccctttatacatata
tacacatatggaaaaagatacaaaaatttacaacattatagattaggcac
ataaagcaatataatctacagatacagagaaataaagcatcactattttt
tattattttatacaatttcagagcaaaattcagtgtcaggaatcctgcaa
aaattgacgtataagttgaatgcaataaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5916193_5916426
seq2: B6Ng01-274K23.b_49_281

seq1  AATACTCTTCAATCTCAAAAGCTATTTACTTATTATTGTCCTATAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTTCAATCTCAAAAGCTATTTACTTATTATTGTCCTATAACTTT  50

seq1  AAATAGGTTACACATGGCTAACTTTGTCAACTTGACACAACCTAGAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTTACACATGGCTAACTTTGTCAACTTGACACAACCTAGAATCA  100

seq1  TGTGGGGAAGGACTCTCAATGGAGAGGATTGTCTATAATAGGTTGGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAAGGACTCTCAATGGAGAGGATTGTCTATAATAGGTTGGTGTG  150

seq1  TGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTATGTGTGTGTTTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTATGTGTGTGGATGTGTG  200

seq1  TGTGTGCTCTAATGAAGAATTCACTAGGCAGGAA  234
      |||||||||||||| | ||||| ||||| |||||
seq2  TGTGTGCTCTAATG-ACAATTCCCTAGGTAGGAA  233

seq1: chr5_5984850_5985987
seq2: B6Ng01-274K23.g_64_1194 (reverse)

seq1  AATTTAT-------------TATGTCATATTTTTGCAGTGTATCCTGACA  37
      |||||||             || |||| |||||||||| |  ||||||||
seq2  AATTTATTGCATTCAACTTATACGTCA-ATTTTTGCAG-GATTCCTGACA  48

seq1  CTGAATTTTGGCTCTGAAATTTGTAATTAAAAATAAT-AAAAATAGTGAT  86
      ||||||||| ||||||||| |||||    |||||||| ||||||||||||
seq2  CTGAATTTT-GCTCTGAAA-TTGTA---TAAAATAATAAAAAATAGTGAT  93

seq1  GCTTTTATTTCTTCTTGTATCTTGTTAGATTTATATTTGGCTTTATTGTG  136
      || |||||||||   |||||||   |||| |||||||  |||||| ||||
seq2  GC-TTTATTTCT--CTGTATCT--GTAGA-TTATATT--GCTTTA-TGTG  134

seq1  CCTTAATCTATAATGTTTGTTAAATTTTTGTATCTTTTTTCCATATGTGT  186
      || ||||||||||||||   |||||||||||||| |||||||||||||||
seq2  CC-TAATCTATAATGTT--GTAAATTTTTGTATC-TTTTTCCATATGTGT  180

seq1  ATATATGTATAAAAGGGGTAAAAAGAGATTATAAATATAAATAAGAATAA  236
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTAT-AAAGGGGTAAAAAGAGATTATAAATATAAATAAGAATAA  229

seq1  AAATCAAGTATCTATAAGTTAACATGACTTTTTTGTTCTTCTGTAGTATG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGTATCTATAAGTTAACATGACTTTTTTGTTCTTCTGTAGTATG  279

seq1  TTTTCAGGTTTTGGAGTTAACTAGATGCTTATTTTTAAAATTCTTCCTAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGTTTTGGAGTTAACTAGATGCTTATTTTTAAAATTCTTCCTAT  329

seq1  AAGTGGTGAAAAATCAGATATTTTTACTAAATATAGACAGTATACCACTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTGAAAAATCAGATATTTTTACTAAATATAGACAGTATACCACTT  379

seq1  TTGAGTAAAATACCAAAATATTTTTACATCTGTAAAAGTTACATTTTTGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAAATACCAAAATATTTTTACATCTGTAAAAGTTACATTTTTGT  429

seq1  AAAACACAGGCATTTTAAAGCTAAAAGTTTCTTTTTCATTAGTAATTTAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAGGCATTTTAAAGCTAAAAGTTTCTTTTTCATTAGTAATTTAC  479

seq1  AAAAGTAAATCACGATGAATCACCTGCTATTAAAAGAAGGTCATGGGGTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAATCACGATGAATCACCTGCTATTAAAAGAAGGTCATGGGGTT  529

seq1  AATCAGGTGTGAGTAGGAGAAAGAGCTGAAGTGCAACTTGTGAACTGTGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGTGTGAGTAGGAGAAAGAGCTGAAGTGCAACTTGTGAACTGTGA  579

seq1  AGAGGATTTGTAATCATCATGTATGCATTGAGTCCAGTGGAACTCCTTAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTTGTAATCATCATGTATGCATTGAGTCCAGTGGAACTCCTTAA  629

seq1  AAACACCGAGAATCACTATAATCATCAGGTGTACATTGAATCCAATGGAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCGAGAATCACTATAATCATCAGGTGTACATTGAATCCAATGGAA  679

seq1  CTTCTTTAAACCACCGAGAATCATTATTTTGATTTCCCTTTTTTTTCTTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTAAACCACCGAGAATCATTATTTTGATTTCCCTTTTTTTTCTTT  729

seq1  CTTTTTTTATTTTTTTTGCCAATATTCTCATCCAGATGCAAATGCATGGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTATTTTTTTTGCCAATATTCTCATCCAGATGCAAATGCATGGT  779

seq1  ACTTCCTAATGATGTTATTAATAATGCATGCAGCTACATTTTAGGATTTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAATGATGTTATTAATAATGCATGCAGCTACATTTTAGGATTTT  829

seq1  CCAAGTAGGTATTAATCAGTCTCGAGCCCAGAGAAGTAAAATGAGAAGAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAGGTATTAATCAGTCTCGAGCCCAGAGAAGTAAAATGAGAAGAG  879

seq1  ACTATACATTCAAGAATTACCTCAGGTCGACAGAGTCTAAGGCAGAAAGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACATTCAAGAATTACCTCAGGTCGACAGAGTCTAAGGCAGAAAGC  929

seq1  CTTTCTGTTCATAAAACGGCAGCAAGAAATAATGACCCTTGAACTATTAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTTCATAAAACGGCAGCAAGAAATAATGACCCTTGAACTATTAG  979

seq1  CTAGAGCAAAGTGTTGGGAGTTCACTTTGTGCAAGGAAGTGTGGAGGCAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCAAAGTGTTGGGAGTTCACTTTGTGCAAGGAAGTGTGGAGGCAG  1029

seq1  AGGTGCCTTTTTCACAAAGCACACTTGTCAGAGACTTTGTCTCCAAAGTA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCTTTTTCACAAAGCACACTTGTCAGAGACTTTGTCTCCAAAGTA  1079

seq1  TTCCTCTGAGGAAGAAGTTAAGCTGAGACCATAAATCCAGTCCAAAGAAT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGAGGAAGAAGTTAAGCTGAGACCATAAATCCAGTCCAAAGAAT  1129

seq1  TC  1138
      ||
seq2  TC  1131