BAC Information

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BAC

Clone NameB6Ng01-274P19
Chromosome5 (Build37)
Map Location 18,838,573 - 18,957,969
singlet/doubletdoublet
Overlap geneMagi2
Upstream geneGnai1, LOC100041818, LOC668167, 4921504A21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274P19.bB6Ng01-274P19.g
ACCGA076145GA076146
length1,1441,108
definitionB6Ng01-274P19.b B6Ng01-274P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,956,817 - 18,957,969)(18,838,573 - 18,839,670)
sequence
gaattcaagagctttattataataaatgttaatgaataagagctcaaaat
gtgctcatagttcattgtagaactataaacatcatggagattaatagccg
atcacaggtggccaagaaggaagctagaggggaaggggcaactctcaaca
gctactagactcctacctttcttaaaatctctccatttctcattcatact
gatctttatttatttttcagtactccaggggtgcaacagcctctgctctt
gcatttcatcttttcactaatattggcttaatgtgacaaaataaaatcca
tcaacatctctaattatatataactgcccaaaggatatcacatggcccaa
tacataatcaacaacatttcccataataatacatgttagtatgaattcaa
atgccatataaatttaaacatctacaacatttaatgattattaaagtatg
tggaatacctatggcacatagcgagaaattatatagcttcaaattaagac
atgctttccattttcctcactaactgtcctcaagagttactgttatagtt
tggatcttaattgtctcttcaaagtctcagtattaaagaactggtccaca
gcttgatgctaaaggtcactggtggagacatcatgtgggaggacctagtg
agaggtgggaaggtgattgggagcacagcttttaagggaattccataact
cagataccttcctatttctctttttgtatttttacatctggaaaccaagc
ttgtggttttatttctccacaaactcagacttgaagcactttcttactgc
agtgccaaaacaatggtgcccactgataaagtaaaggaatctacagacgc
cagagctcgcatctatgacttaattgtcttgggtattttttttttttttt
agaacacagttgggaactcttgttgcttctgtttgaatgttatagaagac
aaggcttactttgggttgcctggagtttaataacactagattgatagcat
agatgaatcaaacctactacctgagtttacttaattagtccctagattcg
tagtggaggaaagaatactcagtgaatattataggaatcataaattaaag
tcattacttctatcctctgaacacatcttgtacttgaaagatgc

gaattcccctgtactggggcatatgatcttcgcaagaccaagggcaaagg
gtaaaccatctagtaataaattcttttggtttcctttatcctggaaattt
ttatttttttccagctttcataaaagatgggttatttgggcataatatca
atgatttttatgtattttttcattagtatttgaaaaattacaatatcact
tgaattttgtttttataggttaatttaaataaacaccatcatttaagttg
acttacacatagctgttattttctctgaggtgtgtgtgtgtgtgtgtgtg
ttatatctgtgtgtatgcacacgtgtctgcgggtacacatacaggtttgt
gtcttgtgcatttctgtgtgaatatgtcagatttgtgtatgtgttggttg
gttaatgttagctaagaagaaaagcaaagcaacatttctgagataaaaaa
gaaacattacagttctaactattactggggttttagtaaaattatttcat
gcattgtatgagtggatcaaactaataattttaaaagatatagtatctac
taacttcagacacattttgaagactgggctgttgtcacctaaactgttat
cacataaatcatgatcatgagcacaaaagcacatattaaggataacaaca
gatgagagatctagtttaacatgttgattggcattacctagtttacaaac
atttttacacagacagtcagatgtgaaatatcgaatatatgtagggacaa
gaaagttacaataaagttatgttttctgattattaaaaaaaaatcgaaga
ggtttagaagggtgtcaaatatttctaagtcattatatggcagtagccca
ggtaatattcttcagacttcaaccaagacttgaggaaactgataggatca
cattttcctagaggtaagtgttcttttgtaggcagaaactaacagatatg
ggattagtaagtgctataaattcttttcttcatccagatattctgacatt
caaccaaaaaatctgaaaatttctgaccatattaaaatcaaagttcacca
accgtgtaaaaccgaaggcaagctttcagaaagaacattgaagtgataaa
attgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18956817_18957969
seq2: B6Ng01-274P19.b_43_1186 (reverse)

seq1  GCATCTTTCCCAAGTACAAGATGTGTTCAGAAGATAGAAGGTTATTGGAC  50
      ||||||||  ||||||||||||||||||||| ||||||||  || | |||
seq2  GCATCTTT--CAAGTACAAGATGTGTTCAGAGGATAGAAG--TAAT-GAC  45

seq1  TTTAATTTTAATGATTCCTTATAAATATCACTTGAAGTA-TCTTTCCTCC  99
      ||||||||  |||||||| |||||   |||||   |||| ||||||||||
seq2  TTTAATTT--ATGATTCC-TATAATATTCACT--GAGTATTCTTTCCTCC  90

seq1  AACTACGAATCTAGGGACTAATTTAAGTAAACTCAGGTAGTAGGTTTTGA  149
       |||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  -ACTACGAATCTAGGGACTAA-TTAAGTAAACTCAGGTAGTAGG-TTTGA  137

seq1  TTCATCTATGCTATCAATCTAGTGTTATTAAACTCCAGGCAACCAAAAGT  199
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCATCTATGCTATCAATCTAGTGTTATTAAACTCCAGGCAACCCAAAGT  187

seq1  AAGCCTTGTCTTCTATAACATTC-AACAGAAGCAACAAGAGTTCCCAACT  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGCCTTGTCTTCTATAACATTCAAACAGAAGCAACAAGAGTTCCCAACT  237

seq1  GTGTTCT--AAAAAAAAAAAAATACCCAAGACAATTAAGTCATAGATGCG  296
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAAAAAAAAAAAAAAATACCCAAGACAATTAAGTCATAGATGCG  287

seq1  AGCTCTGGCGTCTGTAGATTCCTTTACTTTATCAGTGGGCACCATTGTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGCGTCTGTAGATTCCTTTACTTTATCAGTGGGCACCATTGTTT  337

seq1  TGGCACTGCAGTAAGAAAGTGCTTCAAGTCTGAGTTTGTGGAGAAATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGCAGTAAGAAAGTGCTTCAAGTCTGAGTTTGTGGAGAAATAAA  387

seq1  ACCACAAGCTTGGTTTCCAGATGTAAAAATACAAAAAGAGAAATAGGAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGCTTGGTTTCCAGATGTAAAAATACAAAAAGAGAAATAGGAAG  437

seq1  GTATCTGAGTTATGGAATTCCCTTAAAAGCTGTGCTCCCAATCACCTTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGAGTTATGGAATTCCCTTAAAAGCTGTGCTCCCAATCACCTTCC  487

seq1  CACCTCTCACTAGGTCCTCCCACATGATGTCTCCACCAGTGACCTTTAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCACTAGGTCCTCCCACATGATGTCTCCACCAGTGACCTTTAGC  537

seq1  ATCAAGCTGTGGACCAGTTCTTTAATACTGAGACTTTGAAGAGACAATTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTGTGGACCAGTTCTTTAATACTGAGACTTTGAAGAGACAATTA  587

seq1  AGATCCAAACTATAACAGTAACTCTTGAGGACAGTTAGTGAGGAAAATGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAACTATAACAGTAACTCTTGAGGACAGTTAGTGAGGAAAATGG  637

seq1  AAAGCATGTCTTAATTTGAAGCTATATAATTTCTCGCTATGTGCCATAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGTCTTAATTTGAAGCTATATAATTTCTCGCTATGTGCCATAGG  687

seq1  TATTCCACATACTTTAATAATCATTAAATGTTGTAGATGTTTAAATTTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACATACTTTAATAATCATTAAATGTTGTAGATGTTTAAATTTAT  737

seq1  ATGGCATTTGAATTCATACTAACATGTATTATTATGGGAAATGTTGTTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTTGAATTCATACTAACATGTATTATTATGGGAAATGTTGTTGA  787

seq1  TTATGTATTGGGCCATGTGATATCCTTTGGGCAGTTATATATAATTAGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATTGGGCCATGTGATATCCTTTGGGCAGTTATATATAATTAGAG  837

seq1  ATGTTGATGGATTTTATTTTGTCACATTAAGCCAATATTAGTGAAAAGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATGGATTTTATTTTGTCACATTAAGCCAATATTAGTGAAAAGAT  887

seq1  GAAATGCAAGAGCAGAGGCTGTTGCACCCCTGGAGTACTGAAAAATAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAAGAGCAGAGGCTGTTGCACCCCTGGAGTACTGAAAAATAAAT  937

seq1  AAAGATCAGTATGAATGAGAAATGGAGAGATTTTAAGAAAGGTAGGAGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAGTATGAATGAGAAATGGAGAGATTTTAAGAAAGGTAGGAGTC  987

seq1  TAGTAGCTGTTGAGAGTTGCCCCTTCCCCTCTAGCTTCCTTCTTGGCCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCTGTTGAGAGTTGCCCCTTCCCCTCTAGCTTCCTTCTTGGCCAC  1037

seq1  CTGTGATCGGCTATTAATCTCCATGATGTTTATAGTTCTACAATGAACTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCGGCTATTAATCTCCATGATGTTTATAGTTCTACAATGAACTA  1087

seq1  TGAGCACATTTTGAGCTCTTATTCATTAACATTTATTATAATAAAGCTCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACATTTTGAGCTCTTATTCATTAACATTTATTATAATAAAGCTCT  1137

seq1  TGAATTC  1153
      |||||||
seq2  TGAATTC  1144


seq1: chr5_18838573_18839670
seq2: B6Ng01-274P19.g_68_1175

seq1  GAATTCCCCTGTACTGGGGCATATGATCTTCGCAAGACCAAGGGCAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGTACTGGGGCATATGATCTTCGCAAGACCAAGGGCAAAGG  50

seq1  GTAAACCATCTAGTAATAAATTCTTTTGGTTTCCTTTATCCTGGAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCATCTAGTAATAAATTCTTTTGGTTTCCTTTATCCTGGAAATTT  100

seq1  TTATTTTTTTCCAGCTTTCATAAAAGATGGGTTATTTGGGCATAATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTCCAGCTTTCATAAAAGATGGGTTATTTGGGCATAATATCA  150

seq1  ATGATTTTTATGTATTTTTTCATTAGTATTTGAAAAATTACAATATCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTATGTATTTTTTCATTAGTATTTGAAAAATTACAATATCACT  200

seq1  TGAATTTTGTTTTTATAGGTTAATTTAAATAAACACCATCATTTAAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGTTTTTATAGGTTAATTTAAATAAACACCATCATTTAAGTTG  250

seq1  ACTTACACATAGCTGTTATTTTCTCTGAGGTGTGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACACATAGCTGTTATTTTCTCTGAGGTGTGTGTGTGTGTGTGTGTG  300

seq1  TTATATCTGTGTGTATGCACACGTGTCTGCGGGTACACATACAGGTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTGTGTGTATGCACACGTGTCTGCGGGTACACATACAGGTTTGT  350

seq1  GTCTTGTGCATTTCTGTGTGAATATGTCAGATTTGTGTATGTGTTGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTGCATTTCTGTGTGAATATGTCAGATTTGTGTATGTGTTGGTTG  400

seq1  GTTAATGTTAGCTAAGAAGAAAAGCAAAGCAACATTTCTGAGATAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTTAGCTAAGAAGAAAAGCAAAGCAACATTTCTGAGATAAAAAA  450

seq1  GAAACATTACAGTTCTAACTATTACTGGGGTTTTAGTAAAATTATTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTACAGTTCTAACTATTACTGGGGTTTTAGTAAAATTATTTCAT  500

seq1  GCATTGTATGAGTGGATCAAACTAATAATTTTAAAAGATATAGTATCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTATGAGTGGATCAAACTAATAATTTTAAAAGATATAGTATCTAC  550

seq1  TAACTTCAGACACATTTTGAAGACTGGGCTGTTGTCACCTAAACTGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAGACACATTTTGAAGACTGGGCTGTTGTCACCTAAACTGTTAT  600

seq1  CACATAAATCATGATCATGAGCACAAAAGCACATATTAAGGATAACAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAATCATGATCATGAGCACAAAAGCACATATTAAGGATAACAACA  650

seq1  GATGAGAGATCTAGTTTAACATGTTGATTGGCATTACCTAGTTTACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGATCTAGTTTAACATGTTGATTGGCATTACCTAGTTTACAAAC  700

seq1  ATTTTTACACAGACAGTCAGATGTGAAATATCGAATATATGTAGGGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACACAGACAGTCAGATGTGAAATATCGAATATATGTAGGGACAA  750

seq1  GAAAGTTACAATAAAGTTATG-TTACTGATTATT-AAAAAAAATCGAAGA  798
      ||||||||||||||||||||| || ||||||||| |||||||||||||||
seq2  GAAAGTTACAATAAAGTTATGTTTTCTGATTATTAAAAAAAAATCGAAGA  800

seq1  GG-TTAGAAGGGTGTCAAATATTTCTAAGTCATTATATGGCAGTAGCCCA  847
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGAAGGGTGTCAAATATTTCTAAGTCATTATATGGCAGTAGCCCA  850

seq1  GGT-ATATTC-TCAGACTTCAACCAAGACTTGAGGAAACTGATAGGATCA  895
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTAATATTCTTCAGACTTCAACCAAGACTTGAGGAAACTGATAGGATCA  900

seq1  CA-TTTCCTAGAGGTAAGTGTTC-TTTGTAGGCAGAAACTAACAGATAT-  942
      || |||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  CATTTTCCTAGAGGTAAGTGTTCTTTTGTAGGCAGAAACTAACAGATATG  950

seq1  GGATTAGTAAGTGCTATAAATTCTTTTCTTCATCCAGATATTCTGACAAT  992
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGATTAGTAAGTGCTATAAATTCTTTTCTTCATCCAGATATTCTGACATT  1000

seq1  CCACC-AAAAATCTGAGAATTTCTTGACCATATTAAAATCAAAAGTCAAC  1041
      | ||| |||||||||| |||||| |||||||||||||||||||  ||| |
seq2  CAACCAAAAAATCTGAAAATTTC-TGACCATATTAAAATCAAAGTTCACC  1049

seq1  AA-CGTG-AAAACAG-AGGCAAGCTTTCAGAAAGAACATTGAAGTGATAA  1088
      || |||| ||||| | ||||||||||||||||||||||||||||||||||
seq2  AACCGTGTAAAACCGAAGGCAAGCTTTCAGAAAGAACATTGAAGTGATAA  1099

seq1  AATTTGTTGT  1098
      || |||||||
seq2  AA-TTGTTGT  1108


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