BAC Information

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BAC

Clone NameB6Ng01-275C17
Chromosome5 (Build37)
Map Location 9,795,186 - 9,795,759
singlet/doubletsinglet
Overlap genenone
Upstream geneEG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275C17.bB6Ng01-275C17.g
ACCGA076280GA076281
length1,1731,132
definitionB6Ng01-275C17.b B6Ng01-275C17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttttaatagggttatttgattt
tctggagttcaccttcttgagtctttatatatattggatattagtcccct
atctgatttaggataggtaaagatcctttcccaatctgttggtggccttt
ttgtcttattgacggtggtgtcttttgccttgcagaagctttacagtttc
atgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgt
tccattcaggaatttttcacctgtgcccatatcttcaaggttcccccacc
cctttctcctctaaaagtttctgtgtctctggttttatgtgagttccttg
atccacttagatttgaccttagtacaaggagataggaatggataaattca
cattcttctacatgaaaactaccagttgtgccagcaccatttgttgaaaa
tgttgtctttcttccactggatggttttagctcccttgtcgaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gactacttgtctgtcactataccagtaccatgcagtctttatctcaattg
ctctgtagtaaagctttaggtcaggcatgatgattccaccagaggttctt
ttatccttgagaagagtttttgatatcctaggttttttgttattccagat
gaattcgcagattgttctttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatttgtagattgctttggcaagatagccattt
ttacaatgttgatcctgccaatccttgagcatgggaaatctttccatctt
ctgagatcttctttaatttctttcttctgagacttgaagttcttatcata
cagatctttcacatccttagttagagtcatgcccagatattttatattat
tgtgactatgagaacggtgtgtttctcagtctgtttaatctttgtgtaga
ggaagcatgacttgtttgagtaattttatatcagctacttcactgaagcc
tgttaatcaagtttaaggagtctctgggtggatttaggttcacttaatgc
cataccatcaatacattggcaacggcattgactactcattgatcctgaat
ccttctgcgttgcgaactgactg
gaattcatgcatttaatacatgagcaggacaggcatttttaaaatattta
tcttactagtcagtgagcatgtgaaagggtaggggttgctttttattttc
tggtatctatccagtttcctccttcagtgtctttcttatgttttcatttt
gaaagtcctttatttccctggctaaatataatcctaatacatttgcaggt
atcataaatgcattggttccctggctgttttctattggtttgtgattatt
atataggaaggctatgcttgtattttaactttgtatcctgttcctttact
gaaggtatttatcatctgtaggagttttcttgtggagtcttttgaatgaa
tataagtataccatgtgtaaataataccttggacttttccttttctattt
gtccaatttattctctgctcttggaatacaggcagcaaagcctcaacata
aaatatgtcatgtgtaacaagcccactgccttcatcatgttaaacagaga
aaaaccttgaagcagtttcagtaacatgaggaaacagacagggatgtcta
tctcaccactcttgctgggcataatgctccagtttttagctagagcaaac
agaagctaaagatttctgaatgtccatgttttatccctttatgttatcag
atttatgcattctattcatcttttggttgaatctgtagattatttgtgta
ccacataatttcacaggcaaacaaggaatatttgcatatttcctttcata
ttcatgcctttcttattcttactttgactaaaactattaaaatgtattta
ttaagaaaactgacaatagacaactttctattcttattggttttagtgaa
aatgcttctagtcttttacattcagtactgcatacaatttccctttatta
gatctagcctttatgatatcgaggtatgattattctatatttgtttgctc
aagaaatttattgtaaagagatatggaaatttgtaaatgctttttgctgc
atccattgaaatgataacattactgtatttttcttgtttatgacttgtgt
gttggtggggtgcctttgttacattttttctaatagaataatttagcatt
gtagaatacattactagactcctaccggttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_9795186_9795759
seq2: B6Ng01-275C17.g_624_1194

seq1  TTGCTGGGCATAATGCTCCAGTTTTTAGCTAGAGCAAACAGAAGCTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGCATAATGCTCCAGTTTTTAGCTAGAGCAAACAGAAGCTAAAG  50

seq1  ATTTCTGAATGTCCATGTTTTATCCCTTTATGTTATCAGATTTATGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAATGTCCATGTTTTATCCCTTTATGTTATCAGATTTATGCATT  100

seq1  CTATTCATCTTTTGGTTGAATCTGTAGATTATTTGTGTACCACATAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATCTTTTGGTTGAATCTGTAGATTATTTGTGTACCACATAATTT  150

seq1  CACAGGCAAACAAGGAATATTTGCATATTTCCTTTCATATTCATGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAAACAAGGAATATTTGCATATTTCCTTTCATATTCATGCCTTT  200

seq1  CTTATTCTTACTTTGACTAAAACTATTAAAATGTATTTATTAAGAAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTTACTTTGACTAAAACTATTAAAATGTATTTATTAAGAAAACT  250

seq1  GACAATAGACAACTTTCTATTCTTATTGGTTTTAGTGAAAATGCTTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGACAACTTTCTATTCTTATTGGTTTTAGTGAAAATGCTTCTAG  300

seq1  TCTTTTACATTCAGTACTGCATACAATTTCCCTTTATTAGATCTAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACATTCAGTACTGCATACAATTTCCCTTTATTAGATCTAGCCTT  350

seq1  TATGATATCGAGGTATGATTATTCTATATTTGTTTGCTCAAGAAATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATCGAGGTATGATTATTCTATATTTGTTTGCTCAAGAAATTTAT  400

seq1  TGTAAAGAGATATGGAAATTTTGTAAATGCTTTTTGCTGCATCCATTGAA  450
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTAAAGAGATATGGAAA-TTTGTAAATGCTTTTTGCTGCATCCATTGAA  449

seq1  ATGATAACATTACTTGTATTTTTCTTGTTTATGGACTTGTGTGTGTGT--  498
      ||||||||||||| |||||||||||||||||| |||||||||||  ||  
seq2  ATGATAACATTAC-TGTATTTTTCTTGTTTAT-GACTTGTGTGTTGGTGG  497

seq1  -GTGCCTTTGTTACATTTTTTCTAATAGAATAATTTTAGCATTGTAG-AT  546
       |||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  GGTGCCTTTGTTACATTTTTTCTAATAGAATAA-TTTAGCATTGTAGAAT  546

seq1  ACATTTACTTAGACTCCTTACCGTTTAA  574
      ||| |||| |||||||| ||||| ||||
seq2  ACA-TTAC-TAGACTCC-TACCGGTTAA  571