BAC Information

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BAC

Clone NameB6Ng01-275D21
Chromosome5 (Build37)
Map Location 87,412,519 - 87,413,737
singlet/doubletsinglet
Overlap geneLOC665424
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1
Downstream geneLOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275D21.bB6Ng01-275D21.g
ACCGA076336GA076337
length1,222974
definitionB6Ng01-275D21.b B6Ng01-275D21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaagaatttcacacaagccaggcatggtggcatacgccttta
atccaagcacttgggaggcagaggcaagtggatttctgagtttgaagcca
gccttgtctgcagagtaagttccaggacagccagggctgtacagagaaac
tctgtctggtaaaacaaaacaaaaacaaaaacaaaaacaaaacaaaacaa
caaccccccctaaaacagaacaacaacaacaaaaagaatttcacacaatc
tatttttgtcaaattaaatcctaaactctacttctgttctttactcctct
cagatctacccttttccttcccacctttgcccttttctcctttctccttg
attactttgttgcatatctacatacatatgaatatccaaatacaaccttc
tgtgtcaatttaatattgctctcatctgtgtgttttggtcttaccatttg
tgagttttgtaaatttgttaatggataacaaattttgggtcatctctagg
caaaagtaattctcccttccccataggtcattaagtacctgtgcctcttt
atctggggaaagggcactgtgaaattttcccacatctacattgacctgtc
aactggtacattcattgcactgatcttgtttaagccacatgaagttcctt
gtcatatgactcttacactatttccagtgtcttctgaaatttagggcttg
tgttacagatgtatcatctgagcttcttacttcaaggtcagttgtgctct
caattttgacaattctggctttctctaatggtctttatctgctgcaaaga
aaaacattcaatgagggatgagagctacattgacatgtgcatatccaaat
aaagatttttattgcaattttattttcagtcataggtttctcttatgttc
cagagcctcagaggaaagtaatgcctgcaactataaaactaaccacatgg
accgttttcaatagattcttttacacaatatcttcatttcattttctatg
tataatcttgctttaatttttcaaatcttgagtcacatactagttctttc
aaaagcattctttccttctctggtgcacttaagtgcctcttgctgtaagg
tccaagcagttcactacaactttgtagctaacaatatgtaatttttcttg
aggaaacatcccccctttctaagctcatattccaactctcattagaattt
acctattaattaattaatataa
gaattctctacaaaaagagtctcaaatggttcagaaacaattaaagaaat
gttcaaggttcttacacatcagggaaatgcaaatcaagatgactctgaca
atccacctcatatccatcagaatggctaagataaatactcaagggacagt
acatgttggtaaggttgtggagaaagatcaatcctctacttcttgtagga
ttgcaaacttgtacaacgacttgtgagttatgaaccataaaatacatgat
aatcacactataatcagcagatctaaacaaaccaaataatgagggcccaa
tggtgggtggttaacaatttctcagaagggaaaacaaaataggtattgga
ggtcgagggaactaggagggtaaggggatatggagggaagcagagcagag
ggcaggtggatcagacataaggacataggggagagagaaaagaaataacc
aggaatagcgggtcaatttcagaacattctagagacctgggatgaaggaa
accactaggggttttaagggggtaactgtagatcagacttctagatgtca
ggaatacggatcctgatgtggccacttcctgtaatgaactaatactccca
gtgaagggataaggatagcaacctacccacaaaaccttcatcccaaaatg
tgtcctgcctacaagaggtacagggacaaagacagagcagagactgaggg
aatgatcaaacagttaattcctcaaattgagaccatcaattttgttgggt
aagaaacaagccctgacatcgttaatggtattctgttatgccctgccagg
caggaacctagattaactatcctatgagagggctccacccagcagcccta
atggatagagatgcagaaacccagatacaaatattagacagaagctccag
ggattctactggaaaggaaaagggaagggattgaatggatctgaagagga
cagggactccccaagacgacaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87412519_87413737
seq2: B6Ng01-275D21.b_36_1257

seq1  GAATTCTTTAAGAATTTCACACAAGCCAGGCATGGTGGCATACGCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGAATTTCACACAAGCCAGGCATGGTGGCATACGCCTTTA  50

seq1  ATCCAAGCACTTGGGAGGCAGAGGCAAGTGGATTTCTGAGTTTGAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCACTTGGGAGGCAGAGGCAAGTGGATTTCTGAGTTTGAAGCCA  100

seq1  GCCTTGTCTGCAGAGTAAGTTCCAGGACAGCCAGGGCTGTACAGAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCTGCAGAGTAAGTTCCAGGACAGCCAGGGCTGTACAGAGAAAC  150

seq1  TCTGTCTGGTAAAACAAAACAAAAACAAAAACAAAAACAAAACAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGGTAAAACAAAACAAAAACAAAAACAAAAACAAAACAAAACAA  200

seq1  CAACCCCCCCTAAAACAGAACAACAACAACAAAAAGAATTTCACACAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCCCCTAAAACAGAACAACAACAACAAAAAGAATTTCACACAATC  250

seq1  TATTTTTGTCAAATTAAATCCTAAACTCTACTTCTGTTCTTTACTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTCAAATTAAATCCTAAACTCTACTTCTGTTCTTTACTCCTCT  300

seq1  CAGATCTACCCTTTTCCTTCCCACCTTTGCCCTTTTCTCCTTTCTCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTACCCTTTTCCTTCCCACCTTTGCCCTTTTCTCCTTTCTCCTTG  350

seq1  ATTACTTTGTTGCATATCTACATACATATGAATATCCAAATACAACCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTGTTGCATATCTACATACATATGAATATCCAAATACAACCTTC  400

seq1  TGTGTCAATTTAATATTGCTCTCATCTGTGTGTTTTGGTCTTACCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAATTTAATATTGCTCTCATCTGTGTGTTTTGGTCTTACCATTTG  450

seq1  TGAGTTTTGTAAATTTGTTAATGGATAACAAATTTTGGGTCATCTCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGTAAATTTGTTAATGGATAACAAATTTTGGGTCATCTCTAGG  500

seq1  CAAAAGTAATTCTCCCTTCCCCATAGGTCATTAAGTACCTGTGCCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAATTCTCCCTTCCCCATAGGTCATTAAGTACCTGTGCCTCTTT  550

seq1  ATCTGGGGAAAGGGCACTGTGAAATTTTCCCACATCTACATTGACCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGAAAGGGCACTGTGAAATTTTCCCACATCTACATTGACCTGTC  600

seq1  AACTGGTACATTCATTGCACTGATCTTGTTTAAGCCACATGAAGTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTACATTCATTGCACTGATCTTGTTTAAGCCACATGAAGTTCCTT  650

seq1  GTCATATGACTCTTACACTATTTCCAGTGTCTTCTGAAATTTAGGGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGACTCTTACACTATTTCCAGTGTCTTCTGAAATTTAGGGCTTG  700

seq1  TGTTACAGATGTATCATCTGAGCTTCTTACTTCAAGGTCAGTTGTGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGATGTATCATCTGAGCTTCTTACTTCAAGGTCAGTTGTGCTCT  750

seq1  CAATTTTGACAATTCTGGCTTTCTCTAATGGTCTTTATCTGCTGCAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGACAATTCTGGCTTTCTCTAATGGTCTTTATCTGCTGCAAAGA  800

seq1  AAAACATTCAATGAGGGATGAGAGCTACATTGACATGTGCATATCCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCAATGAGGGATGAGAGCTACATTGACATGTGCATATCCAAAT  850

seq1  AAAGATTTTTATTGCAATTTTATTTTCAGTCATAGGTTTCTCTTATGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTTATTGCAATTTTATTTTCAGTCATAGGTTTCTCTTATGTTC  900

seq1  CAGAGCCTCAGAGGAAAGTAATGCCTGCAACTATAAAACTAACCACATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTCAGAGGAAAGTAATGCCTGCAACTATAAAACTAACCACATGG  950

seq1  ACCGTTTTCAATAGATTCTTTTACACAATATCTTCATTTCATTTTCTTAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACCGTTTTCAATAGATTCTTTTACACAATATCTTCATTTCATTTTC-TAT  999

seq1  GTAATAATCTTGCTTTAATTTTTCAAATCTTGAGTCACATACTAGTTCTT  1050
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-ATAATCTTGCTTTAATTTTTCAAATCTTGAGTCACATACTAGTTCTT  1048

seq1  TCAAAAAGCATTCTTTCC-TCTCCTGTGCACTTAAGTGCTTCTTGCTGTA  1099
      || ||||||||||||||| ||||  |||||||||||||| ||||||||| 
seq2  TC-AAAAGCATTCTTTCCTTCTCTGGTGCACTTAAGTGCCTCTTGCTGT-  1096

seq1  AAAGTCCAAAGCAGTTTCACTACAAACTTGTAGCT-ACAATAATGTA--T  1146
      || |||| |||||| ||||||||||  |||||||| ||||| |||||  |
seq2  AAGGTCC-AAGCAG-TTCACTACAACTTTGTAGCTAACAAT-ATGTAATT  1143

seq1  TTTCTTGAG--AACATCCCCC--TTCTAAGCCTTCATATTTCACATCTCA  1192
      |||||||||  ||||||||||  ||||||||  ||||||| ||  |||||
seq2  TTTCTTGAGGAAACATCCCCCCTTTCTAAGC--TCATATTCCAACTCTCA  1191

seq1  TTAGTATT--ACTATTAA-TAATT-ATATAA  1219
      |||| |||   ||||||| ||||| ||||||
seq2  TTAGAATTTACCTATTAATTAATTAATATAA  1222