BAC Information

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BAC

Clone NameB6Ng01-275I20
Chromosome5 (Build37)
Map Location 51,589,261 - 51,737,484
singlet/doubletdoublet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275I20.bB6Ng01-275I20.g
ACCGA076561GA076562
length1,0961,067
definitionB6Ng01-275I20.b B6Ng01-275I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,589,261 - 51,590,366)(51,736,405 - 51,737,484)
sequence
gaattccagatgaagttcttatctgttctaaccaagaaagtctttcttta
cacctttctttgccttactcgaaccatatttgtttttcaaagtaaacact
gctccaatttctcttttactcatatcactcttctcaataaaccaagcccc
tctggtcaaaggaacattcttcattcttagaacaaaagaaagaaatatag
agacatttttggcaaaacagatatagagcatgtaccaaaaatctgccatt
taatgaggttttccacaaaacttataaattctgttcttttattttataca
atacaacacagactttaatagacattaagtagtccttatttctttcagat
gtatacttgaagataatctgcttgcttttcaaactccttcgtatcagact
attgtgatcacagcattttgcctcacaagactgaagacctgagttcaatc
tctgaattgcatagtaaaaagaggactcccttttgaaatcttccatctga
cctccacaaatatcctgtggtatatgtgttccctaataaataaatgaaat
aaataaataacaaattgtaaatagtctgtgctaaaaaaatgtaagaaaat
aaaaataccatacaggaaatagtgtgaaaaatagaacctttaagttggtt
tttccccaagatgcaatctatttcataaattagtatatattagaaactca
tgcagataggtaaataagaggaatatatgacaaaaatatcaatggagttc
tctttgctttgtgaaattagatactttatagaaagtatattttcatccaa
aagtgtctacttgattacactagaatgcattgaatacttctaccccagtg
tacgtttcttagctgtttaggggaacatattctagagggatgagttcgta
gataatgaggccaactgttgagacactcagacttgtgcctaataagaagc
actcttaagaaccagagccccacccagatactctttgactttcacaaatg
ttatttcttcagatagttaccctgtgtagacttactctcaatgacttctt
caaaactatcacagaaactcagaactcagcactcagatgagatgca

gaattcagtaatctgtactggatgtccaggcattagtatgaattaacaac
actctgccataattcattgtaattccccagagatgcagttttgataaatg
cagagtgagtttttaacaaaaatcactgtggtgaagccaaatttcagtga
agtctgggtcccattggtaatttgctttttttcctttggttgctctgctc
tgcatcccttactatcttgtgcatgtatggggagggggtgaaataaataa
aatcctttaaaaaaaacctgacaacttgaacctgaattttaataaactta
acattagtaaaaagttcaggtgattggaagaagggtttttaatcagtcca
gatagataagatcacagtcataattgctttggttgttattatttccttca
catgtgcttgtaccaaatggaaaataaagtcttgagatgtctactgatgg
aaatgaaaataatggtgttcagtgataatttgataggaagtaattggcca
cctgaagagaaaagccctcatcgtggaaataattataagtaattggttac
tccaagattggactctatttgatacactcagtgcaataaatactcctaac
taaagatgctaacttgagtatttaaggatactagcaactgcataaattgg
agttaagacagacacttaacagacagggtagccatggtcctattttggta
catgggcatgatttatttttatattttaattagctgccatttgattacaa
atgaagatcttgcatgaagttgggatgtattgctcttgtccaaaggagaa
agaagaatggcaatattgatctctttttactggttattttatttaattag
atttcaaatattatccctttttttccattttttattaggtatttagctca
tttatattcaatgctataccaaaagtccccatacccacccacccacttcc
ctaccaccactcccctttttggccttggcgttcccctgaactgggcatta
aaggttgtaggtcaatggtctctcttttccagtgatgcactaggctatct
tttggatacatatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51589261_51590366
seq2: B6Ng01-275I20.b_48_1143

seq1  GAATTCCAGATGAAGTTCTTATCTGTTCTAACCAAGAAAGTCTTTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGAAGTTCTTATCTGTTCTAACCAAGAAAGTCTTTCTTTA  50

seq1  CACCTTTCTTTGCCTTACTCGAACCATATTTGTTTTTCAAAGTAAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCTTTGCCTTACTCGAACCATATTTGTTTTTCAAAGTAAACACT  100

seq1  GCTCCAATTTCTCTTTTACTCATATCACTCTTCTCAATAAACCAAGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAATTTCTCTTTTACTCATATCACTCTTCTCAATAAACCAAGCCCC  150

seq1  TCTGGTCAAAGGAACATTCTTCATTCTTAGAACAAAAGAAAGAAATATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCAAAGGAACATTCTTCATTCTTAGAACAAAAGAAAGAAATATAG  200

seq1  AGACATTTTTGGCAAAACAGATATAGAGCATGTACCAAAAATCTGCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTTGGCAAAACAGATATAGAGCATGTACCAAAAATCTGCCATT  250

seq1  TAATGAGGTTTTCCACAAAACTTATAAATTCTGTTCTTTTATTTTATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGTTTTCCACAAAACTTATAAATTCTGTTCTTTTATTTTATACA  300

seq1  ATACAACACAGACTTTAATAGACATTAAGTAGTCCTTATTTCTTTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACACAGACTTTAATAGACATTAAGTAGTCCTTATTTCTTTCAGAT  350

seq1  GTATACTTGAAGATAATCTGCTTGCTTTTCAAACTCCTTCGTATCAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTGAAGATAATCTGCTTGCTTTTCAAACTCCTTCGTATCAGACT  400

seq1  ATTGTGATCACAGCATTTTGCCTCACAAGACTGAAGACCTGAGTTCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATCACAGCATTTTGCCTCACAAGACTGAAGACCTGAGTTCAATC  450

seq1  TCTGAATTGCATAGTAAAAAGAGGACTCCCTTTTGAAATCTTCCATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTGCATAGTAAAAAGAGGACTCCCTTTTGAAATCTTCCATCTGA  500

seq1  CCTCCACAAATATCCTGTGGTATATGTGTTCCCTAATAAATAAATGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACAAATATCCTGTGGTATATGTGTTCCCTAATAAATAAATGAAAT  550

seq1  AAATAAATAACAAATTGTAAATAGTCTGTGCTAAAAAAATGTAAGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAACAAATTGTAAATAGTCTGTGCTAAAAAAATGTAAGAAAAT  600

seq1  AAAAATACCATACAGGAAATAGTGTGAAAAATAGAACCTTTAAGTTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACCATACAGGAAATAGTGTGAAAAATAGAACCTTTAAGTTGGTT  650

seq1  TTTCCCCAAGATGCAATCTATTTCATAAATTAGTATATATTAGAAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAAGATGCAATCTATTTCATAAATTAGTATATATTAGAAACTCA  700

seq1  TGCAGATAGGTAAATAAGAGGAATATATGACAAAAATATCAATGGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATAGGTAAATAAGAGGAATATATGACAAAAATATCAATGGAGTTC  750

seq1  TCTTTGCTTTGTGAAATTAGATACTTTATAGAAAGTATATTTTCATCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTTGTGAAATTAGATACTTTATAGAAAGTATATTTTCATCCAA  800

seq1  AAGTGTCTACTTGATTACACTAGAATGCATTGAATACTTCTACCCCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTACTTGATTACACTAGAATGCATTGAATACTTCTACCCCAGTG  850

seq1  TACGTTTCTTAGCTGTTTAGGGGAACATATTCTAGAGGGATGAGTTCGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTCTTAGCTGTTTAGGGGAACATATTCTAGAGGGATGAGTTCGTA  900

seq1  GATAATGAGGCCAACTGTTGAGACACTCAGACTTGTGCCTAATAAGAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGAGGCCAACTGTTGAGACACTCAGACTTGTGCCTAATAAGAAGC  950

seq1  ACTCTTAAGAACCAGAGCCCCACCCAGATACTCTTTGACTTTCACAAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAAGAACCAGAGCCCCACCCAGATACTCTTTGACTTTCACAAATG  1000

seq1  TTATTTCTTCAAGAATTAGTTACCCTGTGTAAGACTTACTCTCCAATGAC  1050
      |||||||||| |||  |||||||||||||| ||||||||||| |||||||
seq2  TTATTTCTTC-AGA--TAGTTACCCTGTGT-AGACTTACTCT-CAATGAC  1045

seq1  TTCTTCAAAAACCTATCACAGAAACTCAAGAACTCAGCACTCCAGATGAA  1100
      ||||||||||  ||||||||||||||| ||||||||||||| |||||| |
seq2  TTCTTCAAAA--CTATCACAGAAACTC-AGAACTCAGCACT-CAGATG-A  1090

seq1  GATGCA  1106
      ||||||
seq2  GATGCA  1096


seq1: chr5_51736405_51737484
seq2: B6Ng01-275I20.g_49_1115 (reverse)

seq1  CTGCATATGTAT-CAAAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAG  49
      |||||||||||| |||||||| |||||||    |||||||||||| ||||
seq2  CTGCATATGTATCCAAAAGATAGCCTAGT---GCATCACTGGAAA-AGAG  46

seq1  -GCCCATTGGACACACAAACTTTATATGCCCCAGTACAGGGGAACACCAG  98
       | ||||| |||  |||| ||||| ||| |||||| ||||||||| ||| 
seq2  AGACCATT-GACCTACAACCTTTA-ATG-CCCAGTTCAGGGGAACGCCAA  93

seq1  GGCCAAAAAGGGGGAGTGGGTGGGTAGGGAAGTGGGGGTGGGTGGGTATG  148
      ||||||||| |||||||||   |||||||||||  |||||||||||||| 
seq2  GGCCAAAAA-GGGGAGTGG--TGGTAGGGAAGT--GGGTGGGTGGGTAT-  137

seq1  GGGGACTTTTGGTATAGCATTGGAAATATAAATGAGCTAAATACCTAATA  198
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  GGGGACTTTTGGTATAGCATTG--AATATAAATGAGCTAAATACCTAATA  185

seq1  AAAAATGGAAAAAAAGGGATAATATTTGAAATCTAATTAAATAAAATAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGAAAAAAAGGGATAATATTTGAAATCTAATTAAATAAAATAAC  235

seq1  CAGTAAAAAGAGATCAATATTGCCATTCTTCTTTCTCCTTTGGACAAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAAGAGATCAATATTGCCATTCTTCTTTCTCCTTTGGACAAGAG  285

seq1  CAATACATCCCAACTTCATGCAAGATCTTCATTTGTAATCAAATGGCAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATCCCAACTTCATGCAAGATCTTCATTTGTAATCAAATGGCAGC  335

seq1  TAATTAAAATATAAAAATAAATCATGCCCATGTACCAAAATAGGACCATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAATATAAAAATAAATCATGCCCATGTACCAAAATAGGACCATG  385

seq1  GCTACCCTGTCTGTTAAGTGTCTGTCTTAACTCCAATTTATGCAGTTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCTGTCTGTTAAGTGTCTGTCTTAACTCCAATTTATGCAGTTGCT  435

seq1  AGTATCCTTAAATACTCAAGTTAGCATCTTTAGTTAGGAGTATTTATTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCTTAAATACTCAAGTTAGCATCTTTAGTTAGGAGTATTTATTGC  485

seq1  ACTGAGTGTATCAAATAGAGTCCAATCTTGGAGTAACCAATTACTTATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGTATCAAATAGAGTCCAATCTTGGAGTAACCAATTACTTATAA  535

seq1  TTATTTCCACGATGAGGGCTTTTCTCTTCAGGTGGCCAATTACTTCCTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCACGATGAGGGCTTTTCTCTTCAGGTGGCCAATTACTTCCTAT  585

seq1  CAAATTATCACTGAACACCATTATTTTCATTTCCATCAGTAGACATCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATCACTGAACACCATTATTTTCATTTCCATCAGTAGACATCTCA  635

seq1  AGACTTTATTTTCCATTTGGTACAAGCACATGTGAAGGAAATAATAACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTATTTTCCATTTGGTACAAGCACATGTGAAGGAAATAATAACAA  685

seq1  CCAAAGCAATTATGACTGTGATCTTATCTATCTGGACTGATTAAAAACCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAATTATGACTGTGATCTTATCTATCTGGACTGATTAAAAACCC  735

seq1  TTCTTCCAATCACCTGAACTTTTTACTAATGTTAAGTTTATTAAAATTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAATCACCTGAACTTTTTACTAATGTTAAGTTTATTAAAATTCA  785

seq1  GGTTCAAGTTGTCAGGTTTTTTTTAAAGGATTTTATTTATTTCACCCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAGTTGTCAGGTTTTTTTTAAAGGATTTTATTTATTTCACCCCCT  835

seq1  CCCCATACATGCACAAGATAGTAAGGGATGCAGAGCAGAGCAACCAAAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATACATGCACAAGATAGTAAGGGATGCAGAGCAGAGCAACCAAAGG  885

seq1  AAAAAAAGCAAATTACCAATGGGACCCAGACTTCACTGAAATTTGGCTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCAAATTACCAATGGGACCCAGACTTCACTGAAATTTGGCTTC  935

seq1  ACCACAGTGATTTTTGTTAAAAACTCACTCTGCATTTATCAAAACTGCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTGATTTTTGTTAAAAACTCACTCTGCATTTATCAAAACTGCAT  985

seq1  CTCTGGGGAATTACAATGAATTATGGCAGAGTGTTGTTAATTCATACTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGAATTACAATGAATTATGGCAGAGTGTTGTTAATTCATACTAA  1035

seq1  TGCCTGGACATCCAGTACAGATTACTGAATTC  1080
      ||||||||||||||||||||||||||||||||
seq2  TGCCTGGACATCCAGTACAGATTACTGAATTC  1067


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