BAC Information

Click to search

BAC

Clone NameB6Ng01-276G12
Chromosome5 (Build37)
Map Location 109,993,411 - 110,102,408
singlet/doubletdoublet
Overlap geneEG667185, LOC671695, LOC636173, LOC624831
Upstream geneGak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2
Downstream geneLOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276G12.bB6Ng01-276G12.g
ACCGA077196GA077197
length1,1331,149
definitionB6Ng01-276G12.b B6Ng01-276G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,993,411 - 109,994,545)(110,101,245 - 110,102,408)
sequence
gaattcaagttgctagaaggtaccctacatggtgccagaagaaaaggtaa
agggaataaagagtaatgtatcctcttacaaaattgtccctcatccaagc
caaaaggagatgtgaagaggtggtaggaaagatctggagagtcaaaggat
gaggaagttggctgggaatagaaatattctagaaagggaataggtagacc
acaaagtcttatcattatgactccaaaaatgcaatcagaggaaggatcac
tataccttgcatgccttgtgtgccagtatggaaagaagaaaggttgcaaa
gcttctagcctacacagttatttacaggaaactgtaaatatgggaagggg
tcaggctgacattgcaagagaagggaacaaagattagccatgtagtacca
aataatgagacatcagaacataaaagtatgcaattttacatagtctctac
agtttatatttcaaaatgtatatacaaatacatatatgcattcagtaaca
attactgatataagagaccatgtgatgagaaggacggtgccatgcattat
atgtgcattataggagtacagggttacaaatgatgtgttggaatcaggaa
atataaagaaaacaattaaaacacactctcaaaaataagctaccatataa
cagtcaacaataaatcaacaaacaatactctgagaaaaaaatcacactgt
ctttcacgaactgatattcagaaatagtaaagtgtatgtgtttgtatctg
tgttgttatgtgtgtgatattaaactgaattatctttagttactaatatt
ttaacaaaatctataatgagatccttcatctagagtaatatatgatcaca
aatttcactgacctaattgggataaaggtatttgtattgcattatttcca
ctactgatttttctcacagaatgaaacacttacatttcataatgaaatgg
gtgtgttttaatataaggttcaagagccttatacagcagtcataaactga
accccataaatcccttttcatatactatactcttctattatatatctgaa
tattctgatatctcatagaacattgtacatttttttcatatgccaaggcc
tctgttgatgcatccacatatgccaatgctgta
gaattctggtctttactgtgcattcagagatcatgatttcctaataattc
attgtgttttcttaggatcaatattgttttgaatatgtaaaacatctgaa
cttacctacagtgtaaggaggatgtgtctgggttctgtgctgttactaca
cagctctacatgcattgagtgtagtttaactccactacattgttgtgggt
gctcagtattacttattgaccatataacttccagtaagaacaatatacag
agaaacaaccttttcaatgtcttgtttcctgaaatttgtactaggaaaca
ttaaattaaaaagtgttatttctctggagtgtgctcagcaattaattttg
tatcagcaaattaagagagcagcttttagatacacacattcccagttaac
agagcctgctattgaaaagtgttgtcaagtacaatgcctatttcttcctt
ctagtcatcttgagttactacaaatttgttcattattgaaaaattaaatt
taatacctaagttatggatacaatgatactggaaaattatgttaagaata
aaaacacactggagagattgctcagcggttaggaacactgactgttcttt
cagatgtcctgagttcaatttccagcaaccacatggtggctcacaaccat
ctgtaatgggctctgatgccctctcctggtatgtctgaagacagttacag
tctactcacatgaataaaataagcattttttttttttttttaaatgggct
ggagagatggctcagaggttgaatgcactgactgcttttccagaggtcct
gagttcaatttccagcaatcacatggtggttcacaaccatttttaatgtg
atcttggtgccctcttctggtttacaggccaaacactgtacatattaaat
ataaataataaataaataaataaataataatctttaatataataaaaaag
aataaaaattcaaacccttgccccccaaataagagatttcttgtcttccc
tccttagaaggtaggtgaaatttgagtgccaaaaggactctatgctattt
ggattaggatgtatgcctactacatgctgaatagcacctaaagttacgga
tctagttgcttgggtgaaagaatattcatgcaaaattattgtaatgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109993411_109994545
seq2: B6Ng01-276G12.b_46_1178

seq1  GAATTCAAGTTGCTAGAAGGTACCCTACATGGTGCCAGAAGAAAAGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTGCTAGAAGGTACCCTACATGGTGCCAGAAGAAAAGGTAA  50

seq1  AGGGAATAAAGAGTAATGTATCCTCTTACAAAATTGTCCCTCATCCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAAAGAGTAATGTATCCTCTTACAAAATTGTCCCTCATCCAAGC  100

seq1  CAAAAGGAGATGTGAAGAGGTGGTAGGAAAGATCTGGAGAGTCAAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGATGTGAAGAGGTGGTAGGAAAGATCTGGAGAGTCAAAGGAT  150

seq1  GAGGAAGTTGGCTGGGAATAGAAATATTCTAGAAAGGGAATAGGTAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTTGGCTGGGAATAGAAATATTCTAGAAAGGGAATAGGTAGACC  200

seq1  ACAAAGTCTTATCATTATGACTCCAAAAATGCAATCAGAGGAAGGATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCTTATCATTATGACTCCAAAAATGCAATCAGAGGAAGGATCAC  250

seq1  TATACCTTGCATGCCTTGTGTGCCAGTATGGAAAGAAGAAAGGTTGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTGCATGCCTTGTGTGCCAGTATGGAAAGAAGAAAGGTTGCAAA  300

seq1  GCTTCTAGCCTACACAGTTATTTACAGGAAACTGTAAATATGGGAAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGCCTACACAGTTATTTACAGGAAACTGTAAATATGGGAAGGGG  350

seq1  TCAGGCTGACATTGCAAGAGAAGGGAACAAAGATTAGCCATGTAGTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGACATTGCAAGAGAAGGGAACAAAGATTAGCCATGTAGTACCA  400

seq1  AATAATGAGACATCAGAACATAAAAGTATGCAATTTTACATAGTCTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAGACATCAGAACATAAAAGTATGCAATTTTACATAGTCTCTAC  450

seq1  AGTTTATATTTCAAAATGTATATACAAATACATATATGCATTCAGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATATTTCAAAATGTATATACAAATACATATATGCATTCAGTAACA  500

seq1  ATTACTGATATAAGAGACCATGTGATGAGAAGGACGGTGCCATGCATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGATATAAGAGACCATGTGATGAGAAGGACGGTGCCATGCATTAT  550

seq1  ATGTGCATTATAGGAGTACAGGGTTACAAATGATGTGTTGGAATCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATTATAGGAGTACAGGGTTACAAATGATGTGTTGGAATCAGGAA  600

seq1  ATATAAAGAAAACAATTAAAACACACTCTCAAAAATAAGCTACCATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGAAAACAATTAAAACACACTCTCAAAAATAAGCTACCATATAA  650

seq1  CAGTCAACAATAAATCAACAAACAATACTCTGAGAAAAAAATCACACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACAATAAATCAACAAACAATACTCTGAGAAAAAAATCACACTGT  700

seq1  CTTTCACGAACTGATATTCAGAAATAGTAAAGTGTATGTGTTTGTATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACGAACTGATATTCAGAAATAGTAAAGTGTATGTGTTTGTATCTG  750

seq1  TGTTGTTATGTGTGTGATATTAAACTGAATTATCTTTAGTTACTAATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTATGTGTGTGATATTAAACTGAATTATCTTTAGTTACTAATATT  800

seq1  TTAACAAAATCTATAATGAGATCCTTCATCTAGAGTAATATATGATCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAATCTATAATGAGATCCTTCATCTAGAGTAATATATGATCACA  850

seq1  AATTTCACTGACCTAATTGGGATAAAGGTATTTGTATTGCATTATTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACTGACCTAATTGGGATAAAGGTATTTGTATTGCATTATTTCCA  900

seq1  CTACTGATTTTTCTCACAGAATGAAACACTTACATTTCATAATGAAAT-G  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTACTGATTTTTCTCACAGAATGAAACACTTACATTTCATAATGAAATGG  950

seq1  GTGTGTTTTAATATAAGGTTCAAGAGCCTTATACAGCAGTCATAAACTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTAATATAAGGTTCAAGAGCCTTATACAGCAGTCATAAACTGA  1000

seq1  ACCCCATAAAT-CCTTTTCATATACTATACTCTTCTTATTATATTATCTG  1048
      ||||||||||| ||||||||||||||||||||||| ||||||| ||||||
seq2  ACCCCATAAATCCCTTTTCATATACTATACTCTTC-TATTATA-TATCTG  1048

seq1  -ATATTCTGAATATCTTCATAGAACATTGTACATTTTTTCCAATATGCC-  1096
       |||||||| ||||| ||||||||||||||||||||||| | ||||||| 
seq2  AATATTCTG-ATATC-TCATAGAACATTGTACATTTTTTTC-ATATGCCA  1095

seq1  AGGCCTCTG-TGATGGCCATCAACAATATG-CAATGCTGTA  1135
      ||||||||| |||||  |||| || ||||| ||||||||||
seq2  AGGCCTCTGTTGATG--CATCCAC-ATATGCCAATGCTGTA  1133

seq1: chr5_110101245_110102408
seq2: B6Ng01-276G12.g_66_1214 (reverse)

seq1  GCACAATTACATATATTTTGCATGAATATTCTTTCACACAAAAGGGAATA  50
      |||| ||||||   ||||||||||||||||||||||| |  |||  | ||
seq2  GCAC-ATTACAATAATTTTGCATGAATATTCTTTCACCC--AAGCAACTA  47

seq1  TTATGATCTGT-ACTTTAGGTGCTAATTAAAGCATGTAGGTAGCATACCA  99
          |||| || |||||||||||||  |  |||||||||   ||||||  
seq2  ----GATCCGTAACTTTAGGTGCTA--TTCAGCATGTAGTAGGCATACAT  91

seq1  TCTTATTCAAATAGCCATAGAGT-CTTTTGCCACCTCAAATTTCACCTAC  148
       || || ||||||| |||||||| |||||| || ||||||||||||||||
seq2  CCTAATCCAAATAG-CATAGAGTCCTTTTGGCA-CTCAAATTTCACCTAC  139

seq1  CTTCTTAGGGAGGGAAGACAAGAATTCTCCTTATTTGGGGGGCAAGGGTT  198
      |||| || |||||||||||||||| ||| ||||||||||||||||||| |
seq2  CTTC-TAAGGAGGGAAGACAAGAAATCT-CTTATTTGGGGGGCAAGGG-T  186

seq1  TTGAATTTTTATTCTTTTTTATTATTATTAAAGATTTATTTATTTATTTA  248
      |||||||||||||||||||||||| |||||||||||   |||||||||||
seq2  TTGAATTTTTATTCTTTTTTATTA-TATTAAAGATT--ATTATTTATTTA  233

seq1  TTTATTTATTTATTTATTATTTAATATGTACAGTGTTTGGCCTGTAAACC  298
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TTTATTTA-TTATTTA-TATTTAATATGTACAGTGTTTGGCCTGTAAACC  281

seq1  AGAAGAGGGCACCAAGATCACATTAAAAATGGTTGTGAACCACCATGTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGCACCAAGATCACATTAAAAATGGTTGTGAACCACCATGTGA  331

seq1  TTGCTGGAAATTGAACTCAGGACCTCTGGAAAAGCAGTCAGTGCATTCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAAATTGAACTCAGGACCTCTGGAAAAGCAGTCAGTGCATTCAA  381

seq1  CCTCTGAGCCATCTCTCCAGCCCATTT--AAAAAAAAAAAAAATGCTTAT  446
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  CCTCTGAGCCATCTCTCCAGCCCATTTAAAAAAAAAAAAAAAATGCTTAT  431

seq1  TTTATTCATGTGAGTAGACTGTAACTGTCTTCAGACATACCAGGAGAGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATGTGAGTAGACTGTAACTGTCTTCAGACATACCAGGAGAGGG  481

seq1  CATCAGAGCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGAAA  531

seq1  TTGAACTCAGGACATCTGAAAGAACAGTCAGTGTTCCTAACCGCTGAGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGGACATCTGAAAGAACAGTCAGTGTTCCTAACCGCTGAGCA  581

seq1  ATCTCTCCAGTGTGTTTTTATTCTTAACATAATTTTCCAGTATCATTGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGTGTGTTTTTATTCTTAACATAATTTTCCAGTATCATTGTA  631

seq1  TCCATAACTTAGGTATTAAATTTAATTTTTCAATAATGAACAAATTTGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACTTAGGTATTAAATTTAATTTTTCAATAATGAACAAATTTGTA  681

seq1  GTAACTCAAGATGACTAGAAGGAAGAAATAGGCATTGTACTTGACAACAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCAAGATGACTAGAAGGAAGAAATAGGCATTGTACTTGACAACAC  731

seq1  TTTTCAATAGCAGGCTCTGTTAACTGGGAATGTGTGTATCTAAAAGCTGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATAGCAGGCTCTGTTAACTGGGAATGTGTGTATCTAAAAGCTGC  781

seq1  TCTCTTAATTTGCTGATACAAAATTAATTGCTGAGCACACTCCAGAGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAATTTGCTGATACAAAATTAATTGCTGAGCACACTCCAGAGAAA  831

seq1  TAACACTTTTTAATTTAATGTTTCCTAGTACAAATTTCAGGAAACAAGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTTTTAATTTAATGTTTCCTAGTACAAATTTCAGGAAACAAGAC  881

seq1  ATTGAAAAGGTTGTTTCTCTGTATATTGTTCTTACTGGAAGTTATATGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAGGTTGTTTCTCTGTATATTGTTCTTACTGGAAGTTATATGGT  931

seq1  CAATAAGTAATACTGAGCACCCACAACAATGTAGTGGAGTTAAACTACAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGTAATACTGAGCACCCACAACAATGTAGTGGAGTTAAACTACAC  981

seq1  TCAATGCATGTAGAGCTGTGTAGTAACAGCACAGAACCCAGACACATCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCATGTAGAGCTGTGTAGTAACAGCACAGAACCCAGACACATCCT  1031

seq1  CCTTACACTGTAGGTAAGTTCAGATGTTTTACATATTCAAAACAATATTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACACTGTAGGTAAGTTCAGATGTTTTACATATTCAAAACAATATTG  1081

seq1  ATCCTAAGAAAACACAATGAATTATTAGGAAATCATGATCTCTGAATGCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAGAAAACACAATGAATTATTAGGAAATCATGATCTCTGAATGCA  1131

seq1  CAGTAAAGACCAGAATTC  1164
      ||||||||||||||||||
seq2  CAGTAAAGACCAGAATTC  1149