BAC Information

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BAC

Clone NameB6Ng01-276I10
Chromosome5 (Build37)10 (Build37)
Map Location 42,693,181 - 42,694,00349,137,239 - 49,138,315
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276I10.bB6Ng01-276I10.g
ACCGA077287GA077288
length1,1851,091
definitionB6Ng01-276I10.b B6Ng01-276I10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,693,181 - 42,694,003)(49,137,239 - 49,138,315)
sequence
gaattcttttgctttattattcagagaggaaatattatgttgatctttca
tttgcctttctaaaagaactcgtaaatattttattcattaatcatccgaa
taccctgagaccaaattgaaccagaagagaaatgtaaagttattaagcgg
cccagatgttgaaatggtaccaagtcaatcctttataaaaaatttttgat
gtactgtttttatgtgctcattctgaaaataatcttatatatgtaataac
agattttgtggatgataagaggagcacatacacctttctctctctctctc
tctctctctctctctctctctctctctgtttgatagaatacaaaatttaa
aaaataaagagtgaaacatgagtccaaaggcttagagatcacagataagt
acttatcaactaccttataaaaggaagttgcagttctcttggttggcaag
aaattgtcatagaaaggtttaagccttttgtaactaatgagcaaactggg
aaagaactgaatgagatgacaagtagggagcaatcagaaatctgtgattt
aattatactcaaaaggaaggacattctgtatttcagggctgcagctgtgc
ctgggacattaatccttctaagttgcaatcactacacaaaggttctgttc
ttacaggttcctccatttcataggtaaagaaacaaatcattaaaatgtta
gggaacttattcaaaaactaaggctgcccatggcagatctgaatgccacc
cccagcaatccacctcctcaatcatggatgtctgacttcagagcgacatg
ggtgacgaataaatctgtcctgtgatatttgaggttggtcactttcagct
cgtgctaaatgaccctataaaaaggcatgtgttgacagggatactttatg
cacagaaagaaaacatatttctcagaacataatgggaaagttgataaata
tgccctggtctctcgatgagatgaataatggcagcgagcagtttttactc
ttacacagacagtcctctgacttaagctatttcaactttcaagaacaatt
caaaagcaaaaatatatttcagtacctttgaaatttttttactctcacaa
gtgatgttcaaagccagatatggttatctcagaacttagatttttccaat
cctttatttctaagccttaccgttatatattcctg
gaattccaatggcctaatgaataggagggtttaccatgaaagagttaggg
aaccaccctgagacaggtttcttctgtaggcctaaagaaacagcataatc
aggcatttactaagaacccctggtggtgggcttaacaatagactagcatt
atacctggctcccttcttagtggcagctgcctgatccctgacttcttttg
atgtatatattccttttgtattgtgtcactgtaagtcagcggatgtatct
tgcctggtttcttgtagctcttctgtataaaaagtatgatgctcaacttg
aaaaattatattcatattctccacaatctctcctgttgattctgtttgcc
attcattccccaaccccttgtccacctgctaccagagacctgttctacac
agacaggtaaaaaaagtgtctgcggcagcccagtaccctgatgatattac
acttctctttctctttaatgagaatttatttgttatttctggattatata
attgtaaacctaataaatgcgggtttatttttccaaccaaatattctaac
cagactcatgtttcataagttatcaaaatgtattaattactttgctcaga
tcaatgttaaatgttggctcacagtttgaggtacagttcatcatagtgag
aaaattgggcaataggacaatgagatatctagtctcattgaatccagtca
cgatgcaaagagaatggtcatatttcagctcactttctcctctttgactc
gagctgggaatgactcccatagtatagttatgcctacttatatagtgact
cactttatcaaaaccttccagaacatatcctattcgtcagtcttagagtt
atcaccccatatgttagccacaagccctgtcggactgacagacaacatca
cagtgtacattgagaatctcagacgaatcatgtgtctgggatagagatac
gactcattcggcaatgactgactaagcatgcatacaaccaagctgtcagt
aactagctctatggaactacataaagttcagcatgcataatgacatgcct
ttgcagtagctcagaagaaggcacttagatcggcagatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_42693181_42694003
seq2: B6Ng01-276I10.b_373_1225 (reverse)

seq1  CAGG-ATATATAA-TGTTAGCCTTAGAAATAAAGGAT--GAAAACT-AAA  45
      |||| ||||||||  || || ||||||||||||||||  ||||| |  ||
seq2  CAGGAATATATAACGGTAAGGCTTAGAAATAAAGGATTGGAAAAATCTAA  50

seq1  GTTCTGA-ATA--CATA-CT-GCTTTG-ACATCAC-TGTGA-AGTAAAAA  87
      ||||||| |||  |||| || |||||| ||||||| ||||| ||||||||
seq2  GTTCTGAGATAACCATATCTGGCTTTGAACATCACTTGTGAGAGTAAAAA  100

seq1  A--TTCAAA-GTACTG-AATATA-TTTTGCTTTTGAATTG-TCTTG-AAG  130
      |  |||||| |||||| |||||| |||||||||||||||| ||||| |||
seq2  AATTTCAAAGGTACTGAAATATATTTTTGCTTTTGAATTGTTCTTGAAAG  150

seq1  TTGAAATAGCCTAAGTCAGA-GACTGTCTGTGT-AGAGT-AAAACTGCTC  177
      |||||||||| ||||||||| |||||||||||| ||||| ||||||||||
seq2  TTGAAATAGCTTAAGTCAGAGGACTGTCTGTGTAAGAGTAAAAACTGCTC  200

seq1  GCTGCCCATTATTCATCTCATCGAGAGACCA-GGCATATTTATCAACTTT  226
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTG-CCATTATTCATCTCATCGAGAGACCAGGGCATATTTATCAACTTT  249

seq1  -CCATTATGTTCTGAG-AATATGTTT--CTTCTGTGCAT-AAGTATCCCT  271
       ||||||||||||||| |||||||||   |||||||||| ||||||||||
seq2  CCCATTATGTTCTGAGAAATATGTTTTCTTTCTGTGCATAAAGTATCCCT  299

seq1  GTCAACACATGCCTTTTTATA-GGTCATTTAGCACGAGCTG-AAGTGACC  319
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GTCAACACATGCCTTTTTATAGGGTCATTTAGCACGAGCTGAAAGTGACC  349

seq1  AACCTCAAATATCACAGGACAGATTTATTCGTCACCCATGTCGCTCTGAA  369
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAAATATCACAGGACAGATTTATTCGTCACCCATGTCGCTCTGAA  399

seq1  GTCAGACATCCATGATTGAGGAGGTGGATTGCTGGGGGTGGCATTCAGAT  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACATCCATGATTGAGGAGGTGGATTGCTGGGGGTGGCATTCAGAT  449

seq1  CTGCCATGGGCAGCCTTAGTTTTTGAATAAGTTCCCTAACATTTTAATGA  469
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGGGCAGCCTTAGTTTTTGAATAAGTTCCCTAACATTTTAATGA  499

seq1  TTTGTTTCTTTACCTATGAAATGGAGGAACCTGTAAGAACAGAACCTTTG  519
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTTACCTATGAAATGGAGGAACCTGTAAGAACAGAACCTTTG  549

seq1  TGTAGTGATTGCAACTTAGAAGGATTAATGTCCCAGGCACAGCTGCAGCC  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGATTGCAACTTAGAAGGATTAATGTCCCAGGCACAGCTGCAGCC  599

seq1  CTGAAATACAGAATGTCCTTCCTTTTGAGTATAATTAAATCACAGATTTC  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATACAGAATGTCCTTCCTTTTGAGTATAATTAAATCACAGATTTC  649

seq1  TGATTGCTCCCTACTTGTCATCTCATTCAGTTCTTTCCCAGTTTGCTCAT  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTCCCTACTTGTCATCTCATTCAGTTCTTTCCCAGTTTGCTCAT  699

seq1  TAGTTACAAAAGGCTTAAACCTTTCTATGACAATTTCTTGCCAACCAAGA  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACAAAAGGCTTAAACCTTTCTATGACAATTTCTTGCCAACCAAGA  749

seq1  GAACTGCAACTTCCTTTTATAAGGTAGTTGATAAGTACTTATCTGTGATC  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCAACTTCCTTTTATAAGGTAGTTGATAAGTACTTATCTGTGATC  799

seq1  TCTAAGCCTTTGGACTCATGTTTCACTCTTTATTTTTTAAATTTTGTATT  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCTTTGGACTCATGTTTCACTCTTTATTTTTTAAATTTTGTATT  849

seq1  CTAT  823
      ||||
seq2  CTAT  853

seq1: chr10_49137239_49138315
seq2: B6Ng01-276I10.g_63_1153

seq1  GAATTCACAATGGCCTAGTGAATAGGAGGGTTTACCATGAAAGAGTTAGG  50
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GAATTC-CAATGGCCTAATGAATAGGAGGGTTTACCATGAAAGAGTTAGG  49

seq1  GAACCACCCTGAGACAGGTTTCTTCAGTAGGCCTAAAGAAACAGCATAAT  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAACCACCCTGAGACAGGTTTCTTCTGTAGGCCTAAAGAAACAGCATAAT  99

seq1  CAGGCATTTACTAAGAACCCCTGGTGGTGGGCTTAACAATAGACTAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTTACTAAGAACCCCTGGTGGTGGGCTTAACAATAGACTAGCAT  149

seq1  TATACCTGGCTCCCTTCTTAGTGGCAGCTGCCTGATCCCTGACTTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTGGCTCCCTTCTTAGTGGCAGCTGCCTGATCCCTGACTTCTTTT  199

seq1  GATGTATATATTCCTTTTGTATTGTGTCACTGTAAGTCAGCGGATGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATATATTCCTTTTGTATTGTGTCACTGTAAGTCAGCGGATGTATC  249

seq1  TTGCCTGGTTTCTTGTAGCTCTTCTGTATAAAAAGTATGATGCTCAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGTTTCTTGTAGCTCTTCTGTATAAAAAGTATGATGCTCAACTT  299

seq1  GAAAAATTATATTCATATTCTCCACAATCTCTCCTGTTGATTCTGTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTATATTCATATTCTCCACAATCTCTCCTGTTGATTCTGTTTGC  349

seq1  CATTCATTCGCCAACCCCTTGTCCACCTGCTACCAGAGACCTGTTCTACA  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCCCCAACCCCTTGTCCACCTGCTACCAGAGACCTGTTCTACA  399

seq1  CAGACAGGTAAAAAAAGTGTCTGCGGCAGCCCAGTACCCTGATGATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGTAAAAAAAGTGTCTGCGGCAGCCCAGTACCCTGATGATATTA  449

seq1  CACTTCTCTTTCTCTTTAATGAGAATTTATTTGTTATTTCTGGATTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCTTTCTCTTTAATGAGAATTTATTTGTTATTTCTGGATTATAT  499

seq1  AATTGTAAACCTAATAAATGCGGGTTTATTTTTCCAACCAAATATTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAACCTAATAAATGCGGGTTTATTTTTCCAACCAAATATTCTAA  549

seq1  CCAGACTCATGTTTCAGAAGTTATCAAAATGTATTAATTACTTTGCTCAA  600
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  CCAGACTCATGTTTCATAAGTTATCAAAATGTATTAATTACTTTGCTCAG  599

seq1  ATCAATGTTTAAGGTTGGCTCACAGTTTGAGGTACAGTTCATCATAGTGG  650
      ||||||||| || |||||||||||||||||||||||||||||||||||| 
seq2  ATCAATGTTAAATGTTGGCTCACAGTTTGAGGTACAGTTCATCATAGTGA  649

seq1  GAAAATTGGGCAATAGGAAAATGAGATATCTAGTCTCATTGAATCCAGTC  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAAATTGGGCAATAGGACAATGAGATATCTAGTCTCATTGAATCCAGTC  699

seq1  AGGATGCAAAGAGAATGGTCATATTTCAGCTCACTTTCTCCTCTTTGACT  750
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGCAAAGAGAATGGTCATATTTCAGCTCACTTTCTCCTCTTTGACT  749

seq1  CAGGGTGGGAATGAAGCCCAGTGTATAGTTATGCCTACTTTTATAGTGAC  800
      |  | |||||||||  ||||  |||||||||||||||||| |||||||||
seq2  CGAGCTGGGAATGACTCCCATAGTATAGTTATGCCTACTTATATAGTGAC  799

seq1  TCTC-TTATCAAAACCTTCCAGAAAATATCCTAAACGTCATTCTTAGAGT  849
      || | ||||||||||||||||||| ||||||||  ||||| |||||||| 
seq2  TCACTTTATCAAAACCTTCCAGAACATATCCTATTCGTCAGTCTTAGAG-  848

seq1  TTCCCACCCCA-AAGGTAACCCCAAGCCCTGTCAAACTGACAGCCAACAT  898
      ||  ||||||| | | || || |||||||||||  |||||||| ||||||
seq2  TTATCACCCCATATGTTAGCCACAAGCCCTGTCGGACTGACAGACAACAT  898

seq1  CACAAGTTTACATTGAGAATCTCAAAACAAAAAATGTGTTTGGGATTAGA  948
      ||| ||| ||||||||||||||| | || ||  |||||| ||||| ||||
seq2  CAC-AGTGTACATTGAGAATCTC-AGACGAATCATGTGTCTGGGA-TAGA  945

seq1  GATAGGCCTCATTCGGGAATTGACTGACTAA-CATG-AAAAAAGAAAGCT  996
      |||| | ||||||||| || ||||||||||| |||| | | ||  |||||
seq2  GATACGACTCATTCGGCAA-TGACTGACTAAGCATGCATACAACCAAGCT  994

seq1  -TCA-TATAT-GGTCTATAGAACAACAT-AAGTTTAGCATG-ATAAT-AC  1040
       ||| ||  | | ||||| |||| |||| ||||| |||||| ||||| ||
seq2  GTCAGTAACTAGCTCTATGGAACTACATAAAGTTCAGCATGCATAATGAC  1044

seq1  ATGCTTTT--AAGAACTCAGAAGAAGGCAGTAAGATCAG---------  1077
      |||| |||  |  | |||||||||||||| | ||||| |         
seq2  ATGCCTTTGCAGTAGCTCAGAAGAAGGCACTTAGATC-GGCAGATCAG  1091