BAC Information

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BAC

Clone NameB6Ng01-276P06
Chromosome5 (Build37)
Map Location 17,085,466 - 17,241,265
singlet/doubletdoublet
Overlap geneSema3c
Upstream geneHgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927
Downstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276P06.bB6Ng01-276P06.g
ACCGA077601GA077602
length1,192578
definitionB6Ng01-276P06.b B6Ng01-276P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,085,466 - 17,086,658)(17,240,697 - 17,241,265)
sequence
gaattccaagtaaacactggtgtcaacgtaaaggtgtgtgaaaaagaact
accttcagcatccacattccgtcccttcttgcagtggattgatggagtga
taacatttggagaactgtgatttactggctggctttctgtgttgatctag
tgcaggtcaaggagatggctatcagccctacctggaatgtatgtcagatg
atataaattagttacattcctgctagctgaatcttttatattattaaatg
gagacttctattagatactttgtaagttttacaattcttcttgtattctg
aatatctttgaaacaaatagaaatgtcctgccagtgctatttggcctgat
tattgatgccttaaaagccaataagatacacagatttagatttccttgct
ttatttatgttgactctttcttgtccacatcaaaaatattagaatcagta
aggatttttgtggaaagaggtgaatacctgtgttcaaggagagagcctag
tatactaggcaaagcgttgtaaaaagttctgtcttctccccagaggtatt
ctattatatattatttccggaaattagtgctctgtgacttgataaaatga
atcagctctctttaaatgtttaagaaaatgtttctgtacttcagataatg
tttccatattgaattatataaagtccaattattgtggtaaatagtttaaa
tattatttcttttttaaaatgaaatatagtcttaaaaataaaagttattt
atcatatttcattttatcttttcttagtctgtagggtctgtagtaatgtt
ctctacttcattcctgagatcagcaccatgtacacatattatgtcttagt
tgattactaaacagattttagctatctctttaaatatgcagaatttaaaa
atttttttcattttctgttaaataatcatttaatctatccactaaaattt
actatgaattaaatttttcctgttgttcaatatgtttttctgtggaaaat
tcctttccatagaagctcactaatgaatttagttctttcttctagtattt
tttattcatgctaatagctttttctcaatgtcttacacagactttgtaac
atgcatttattcagtcaggttttttccttattgctagctatctcattaac
ctctatattgtgaattcatcaaatatttggcattttaaaaat

gaattcagtgagaagccaagtcaagttgtaaagaactttgagccagaaca
gctaagttgaaccagccagtcctagttcagaaagaactagaaaaggagag
tttatttagcagtaagcctccaagatgaaaattacatctggagaataaaa
gttactttcacatcatctagcctccatagaagatgcacctagtcttactg
taacttgatttgccagggctggttgatatccatgagaggccatgcctttt
ataaaaagaaatgagtgaggagacagagctatggccctgggagtggagtg
cagatccaggaatgtaggtagaggtgtggaccagaagatggagctagatg
ggatggagcagtcctcatggctgctaggattttcatttctaccacaagaa
ccctgctcatcgaatacaggaaacccaggatataataacccccctgaaaa
gtaagaccatgaccttaaatctcaacttgtgaagaggttagaggcctcta
aagataaaaatgaatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17085466_17086658
seq2: B6Ng01-276P06.b_47_1238

seq1  GAATTCCAAGTAAACACTGGTGTCAACGTAAAGGTGTGTGAAAAAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTAAACACTGGTGTCAACGTAAAGGTGTGTGAAAAAGAACT  50

seq1  ACCTTCAGCATCCACATTCCGTCCCTTCTTGCAGTGGATTGATGGAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGCATCCACATTCCGTCCCTTCTTGCAGTGGATTGATGGAGTGA  100

seq1  TAACATTTGGAGAACTGTGATTTACTGGCTGGCTTTCTGTGTTGATCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGGAGAACTGTGATTTACTGGCTGGCTTTCTGTGTTGATCTAG  150

seq1  TGCAGGTCAAGGAGATGGCTATCAGCCCTACCTGGAATGTATGTCAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTCAAGGAGATGGCTATCAGCCCTACCTGGAATGTATGTCAGATG  200

seq1  ATATAAATTAGTTACATTCCTGCTAGCTGAATCTTTTATATTATTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTAGTTACATTCCTGCTAGCTGAATCTTTTATATTATTAAATG  250

seq1  GAGACTTCTATTAGATACTTTGTAAGTTTTACAATTCTTCTTGTATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTCTATTAGATACTTTGTAAGTTTTACAATTCTTCTTGTATTCTG  300

seq1  AATATCTTTGAAACAAATAGAAATGTCCTGCCAGTGCTATTTGGCCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTTGAAACAAATAGAAATGTCCTGCCAGTGCTATTTGGCCTGAT  350

seq1  TATTGATGCCTTAAAAGCCAATAAGATACACAGATTTAGATTTCCTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGCCTTAAAAGCCAATAAGATACACAGATTTAGATTTCCTTGCT  400

seq1  TTATTTATGTTGACTCTTTCTTGTCCACATCAAAAATATTAGAATCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGTTGACTCTTTCTTGTCCACATCAAAAATATTAGAATCAGTA  450

seq1  AGGATTTTTGTGGAAAGAGGTGAATACCTGTGTTCAAGGAGAGAGCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTTGTGGAAAGAGGTGAATACCTGTGTTCAAGGAGAGAGCCTAG  500

seq1  TATACTAGGCAAAGCGTTGTAAAAAGTTCTGTCTTCTCCCCAGAGGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAGGCAAAGCGTTGTAAAAAGTTCTGTCTTCTCCCCAGAGGTATT  550

seq1  CTATTATATATTATTTCCGGAAATTAGTGCTCTGTGACTTGATAAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATATATTATTTCCGGAAATTAGTGCTCTGTGACTTGATAAAATGA  600

seq1  ATCAGCTCTCTTTAAATGTTTAAGAAAATGTTTCTGTACTTCAGATAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCTCTTTAAATGTTTAAGAAAATGTTTCTGTACTTCAGATAATG  650

seq1  TTTCCATATTGAATTATATAAAGTCCAATTATTGTGGTAAATAGTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATTGAATTATATAAAGTCCAATTATTGTGGTAAATAGTTTAAA  700

seq1  TATTATTTCTTTTTTAAAATGAAATATAGTCTTAAAAATAAAAGTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTCTTTTTTAAAATGAAATATAGTCTTAAAAATAAAAGTTATTT  750

seq1  ATCATATTTCATTTTATCTTTTCTTAGTCTGTAGGGTCTGTAGTAATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTTCATTTTATCTTTTCTTAGTCTGTAGGGTCTGTAGTAATGTT  800

seq1  CTCTACTTCATTCCTGAGATCAGCACCATGTACACATATTATGTCTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTCATTCCTGAGATCAGCACCATGTACACATATTATGTCTTAGT  850

seq1  TGATTACTAAACAGATTTTAGCTATCTCTTTAAATATGCAGAATTTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTAAACAGATTTTAGCTATCTCTTTAAATATGCAGAATTTAAAA  900

seq1  A-TTTTTTCATTTTCTGTTAAATAATCA-TTAATCTATCCACTAAAATTT  948
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTTTTTCATTTTCTGTTAAATAATCATTTAATCTATCCACTAAAATTT  950

seq1  ACTATGAATT-AATTTTTCCTGTTGTTCAATATGTTTTTCTGTTGGAAAA  997
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  ACTATGAATTAAATTTTTCCTGTTGTTCAATATGTTTTTCTG-TGGAAAA  999

seq1  TTCC-TTCCATAGAAGCTCACCTAATGGAATTTAGTTCTTTCTTCTAGTA  1046
      |||| ||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TTCCTTTCCATAGAAGCTCA-CTAAT-GAATTTAGTTCTTTCTTCTAGTA  1047

seq1  -TATTTATTCATGCT-ATAGCTTTTTCTCAAATGTCTACCACAGACTTTG  1094
       | |||||||||||| ||||||||||||| |||||||  |||||||||||
seq2  TTTTTTATTCATGCTAATAGCTTTTTCTC-AATGTCTTACACAGACTTTG  1096

seq1  TTAACATGCATTTATTCAGTCAGTTTTTTTTCTTATTTGCTTAGCTATCT  1144
       |||||||||||||||||||||| |||||| |||| |||| |||||||| 
seq2  -TAACATGCATTTATTCAGTCAGGTTTTTTCCTTA-TTGC-TAGCTATC-  1142

seq1  TCATTTTACCTCTATATTGGTGATTCATC-AATATTT-GCATTTAAAAAA  1192
      ||| || ||||||||||||   ||||||| ||||||| |||||| |||||
seq2  TCA-TTAACCTCTATATTGTGAATTCATCAAATATTTGGCATTTTAAAAA  1191

seq1  T  1193
      |
seq2  T  1192


seq1: chr5_17240697_17241265
seq2: B6Ng01-276P06.g_70_638 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATATATTCATTTTTATCTTTAGAGGCCTCTAACCTCTTCACAAGTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCATTTTTATCTTTAGAGGCCTCTAACCTCTTCACAAGTTGAGA  100

seq1  TTTAAGGTCATGGTCTTACTTTTCAGGGGGGTTATTATATCCTGGGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTCATGGTCTTACTTTTCAGGGGGGTTATTATATCCTGGGTTTC  150

seq1  CTGTATTCGATGAGCAGGGTTCTTGTGGTAGAAATGAAAATCCTAGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCGATGAGCAGGGTTCTTGTGGTAGAAATGAAAATCCTAGCAGC  200

seq1  CATGAGGACTGCTCCATCCCATCTAGCTCCATCTTCTGGTCCACACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGACTGCTCCATCCCATCTAGCTCCATCTTCTGGTCCACACCTCT  250

seq1  ACCTACATTCCTGGATCTGCACTCCACTCCCAGGGCCATAGCTCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATTCCTGGATCTGCACTCCACTCCCAGGGCCATAGCTCTGTCTC  300

seq1  CTCACTCATTTCTTTTTATAAAAGGCATGGCCTCTCATGGATATCAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCATTTCTTTTTATAAAAGGCATGGCCTCTCATGGATATCAACCA  350

seq1  GCCCTGGCAAATCAAGTTACAGTAAGACTAGGTGCATCTTCTATGGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCAAATCAAGTTACAGTAAGACTAGGTGCATCTTCTATGGAGGC  400

seq1  TAGATGATGTGAAAGTAACTTTTATTCTCCAGATGTAATTTTCATCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGATGTGAAAGTAACTTTTATTCTCCAGATGTAATTTTCATCTTGG  450

seq1  AGGCTTACTGCTAAATAAACTCTCCTTTTCTAGTTCTTTCTGAACTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTACTGCTAAATAAACTCTCCTTTTCTAGTTCTTTCTGAACTAGGA  500

seq1  CTGGCTGGTTCAACTTAGCTGTTCTGGCTCAAAGTTCTTTACAACTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGTTCAACTTAGCTGTTCTGGCTCAAAGTTCTTTACAACTTGAC  550

seq1  TTGGCTTCTCACTGAATTC  569
      |||||||||||||||||||
seq2  TTGGCTTCTCACTGAATTC  569


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