BAC Information

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BAC

Clone NameB6Ng01-277E21
Chromosome5 (Build37)
Map Location 48,167,253 - 48,280,363
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040865
Downstream geneLOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277E21.bB6Ng01-277E21.g
ACCGA077860GA077861
length312592
definitionB6Ng01-277E21.b B6Ng01-277E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,280,053 - 48,280,363)(48,167,253 - 48,167,844)
sequence
ttacttggatagagaacagtatttggtttcttagttgtttatgtgctagg
tttatatctagtttgaggaacagcaggaaatgggaagagaagagacgggg
aagaaaaatagtactatgtaggtaggtatctagatagatgatacatagat
ggataaataggtaaatgatagatgataaggaggggggtatagtacttttc
ttttcttttttcttttttttctttttaaatattttctattaggtattttc
ctcatttacatttccaatgctatcccaaaagtccctcatacccgccccac
cccattccgctt

gaattcatttgtgaaacatacattgatactcggtgccaagccctgtcctt
tgcactggagtctaatttatattaatagacaacatctgcatgctcacagt
gcttcttctgggagaagtgtggtggatgtatgcaaatgaacacatagcac
actagattttccttctaaaagaagaaaagactacttccccaattcaatgt
cagactccaacaaatgcagtaggttctggaaaatgtagatacaacataaa
ggaactgtatgttaatgttttctgctatgtctacatacctttaacaaagc
ataatttgtaaattacaaatagaaagagattattaaatagagaaactaat
aatagagcagtcacaatatactataaactgaatgaatgtggtctctcagt
tactcttgctctctctctctcatcactccctctcttccttcctttttgta
cccagacgtcttcatacatactgttgaaccttcttcttcctcccttcttc
accttctctccttcatccttcttcctaggaaggaaatgtgtatgtgtgtg
tgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48280053_48280363
seq2: B6Ng01-277E21.b_50_360 (reverse)

seq1  AGCGGAATGGGGTGGGGCGGGTATGAGGGACTTTTGGGATAGCATTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAATGGGGTGGGGCGGGTATGAGGGACTTTTGGGATAGCATTGGAA  50

seq1  ATGTAAATGAGGAAAATACCTAATAGAAAATATTTAAAAAGAAAAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGAGGAAAATACCTAATAGAAAATATTTAAAAAGAAAAAAAAG  100

seq1  AAAAAAGAAAAGAAAAGTACTATACCCCCCTCCTTATCATCTATCATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAGAAAAGTACTATACCCCCCTCCTTATCATCTATCATTTA  150

seq1  CCTATTTATCCATCTATGTATCATCTATCTAGATACCTACCTACATAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTATCCATCTATGTATCATCTATCTAGATACCTACCTACATAGTA  200

seq1  CTATTTTTCTTCCCCGTCTCTTCTCTTCCCATTTCCTGCTGTTCCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTCTTCCCCGTCTCTTCTCTTCCCATTTCCTGCTGTTCCTCAAA  250

seq1  CTAGATATAAACCTAGCACATAAACAACTAAGAAACCAAATACTGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATAAACCTAGCACATAAACAACTAAGAAACCAAATACTGTTCTC  300

seq1  TATCCAAGTAA  311
      |||||||||||
seq2  TATCCAAGTAA  311


seq1: chr5_48167253_48167844
seq2: B6Ng01-277E21.g_64_655

seq1  GAATTCATTTGTGAAACATACATTGATACTCGGTGCCAAGCCCTGTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTGAAACATACATTGATACTCGGTGCCAAGCCCTGTCCTT  50

seq1  TGCACTGGAGTCTAATTTATATTAATAGACAACATCTGCATGCTCACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGAGTCTAATTTATATTAATAGACAACATCTGCATGCTCACAGT  100

seq1  GCTTCTTCTGGGAGAAGTGTGGTGGATGTATGCAAATGAACACATAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCTGGGAGAAGTGTGGTGGATGTATGCAAATGAACACATAGCAC  150

seq1  ACTAGATTTTCCTTCTAAAAGAAGAAAAGACTACTTCCCCAATTCAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTTTCCTTCTAAAAGAAGAAAAGACTACTTCCCCAATTCAATGT  200

seq1  CAGACTCCAACAAATGCAGTAGGTTCTGGAAAATGTAGATACAACATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCAACAAATGCAGTAGGTTCTGGAAAATGTAGATACAACATAAA  250

seq1  GGAACTGTATGTTAATGTTTTCTGCTATGTCTACATACCTTTAACAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTATGTTAATGTTTTCTGCTATGTCTACATACCTTTAACAAAGC  300

seq1  ATAATTTGTAAATTACAAATAGAAAGAGATTATTAAATAGAGAAACTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGTAAATTACAAATAGAAAGAGATTATTAAATAGAGAAACTAAT  350

seq1  AATAGAGCAGTCACAATATACTATAAACTGAATGAATGTGGTCTCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGCAGTCACAATATACTATAAACTGAATGAATGTGGTCTCTCAGT  400

seq1  TACTCTTGCTCTCTCTCTCTCATCACTCCCTCTCTTCCTTCCTTTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGCTCTCTCTCTCTCATCACTCCCTCTCTTCCTTCCTTTTTGTA  450

seq1  CCCAGACGTCTTCATACATACTGTTGAACCTTCTTCTTCCTCCCTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACGTCTTCATACATACTGTTGAACCTTCTTCTTCCTCCCTTCTTC  500

seq1  ACCTTCTCTCCTTCATCCTTCTTCCTAGGAAGGAAATGTGTATGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCTCCTTCATCCTTCTTCCTAGGAAGGAAATGTGTATGTGTGTG  550

seq1  TGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTG  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTG  592


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