BAC Information

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BAC

Clone NameB6Ng01-277G03
Chromosome5 (Build37)
Map Location 15,112,602 - 15,139,210
singlet/doubletdoublet
Overlap geneSpeer4d
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277G03.bB6Ng01-277G03.g
ACCGA077918GA077919
length1,143721
definitionB6Ng01-277G03.b B6Ng01-277G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,138,067 - 15,139,210)(15,112,602 - 15,113,389)
sequence
gaattcacatggaattagatttttcaaatttttcattttattaaaaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaatacaact
tcaagtactctggaaattctatgatggtgctaacaatttcaggaatttcc
aacaggacacataacaagaaaaatccatatagtacaagtctttggtgtta
gctgaattttcaaatcagaaagcaaagagaagaatttacattttcagtaa
ctttaggatctgtgagtgttgttaatttaaataccgttatgaggagtcca
gatacagcaggatattagcccatgcaactgtatagggagatacagaagct
acatagtacttcaagtgttgctatcatatatgtctaagtgacattttaca
gattaatgccaagtgaaatcaaaatatagtcccctacccattacatctta
aaactcaatgatctatcaacagttgccatttcacagcaaaaagaaagcag
taggtataaattgaacacagaactgcttctcttgtaagaaatgaacacag
atatatagaacatgtatacttatacattctctttgaaattcaaggtggtt
aatttgctttactaccatataaaaacaatctcgctgtggtcagggaaaaa
agctcattttccatgtttaaaaagtacattggctgggtgtggtggtgcac
gcctttaatcccagctctggggaggcagaggcaagcagatttctgagttg
gaggccagcctggtctacaaagtgagttccaggacagccagggctataca
gagaaaccctgtctagaaaaaccaaaacaaagtacacattgtctctggca
aggaatcacatccatagaccacttagacctatgtgatttggctagaatgc
agacattccctaattacacacctttaatctcaaacaatgaagtaacattc
atttatagaaggaagagtcatgtttgcaagtgacatctaatgaggggcaa
aggtgatgaatcagaagagataacagaatggaggtcagagataggatatg
cctcattcttatgaggactgccaggaaaagaaaggacttaagaaagctgg
gggagggagggcagaatacagagatactgttacagtgtgagga
gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgc
aagaaacatatcgtgcaaatgaaacggaagcagcattgaaagtctgagta
gccggtgggcatccctgcacatgagcctgtgggtagctgacagatcagct
ggtttaaaagcaaggctggtggtctagtcaatcatggtcgctgttctggt
gctaaaccagattctggagaaagctctattgttgttaagacttgagagga
gcttggtggctgattatgggatggatccccgggtggggtagtctctggat
ggtccatcctctcgtcttagctttgtctccgtaactccttccatgagaat
tttgttccctattctgatactactgcatatgccagcaagattttgctgaa
aggaccttgatatagctgtcttgtgaggctatgccagtacctggcaaaca
gaagtggatgctcacagtcatttataggatggagcacagggcctccaatg
gagaagctagagaaagcacccaaggagctgaagggatctgcaaccctata
ggtggaacaacaatatgaactaaccagtacccccagagcttgtgtctcta
gctgcatatgtagcagaagatggcctcgtcagccatcattggaaagagag
gcccctaggtcttgcaaactttatatgccacagtacagggccaagaaatg
ggagtgggtgggtgggggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15138067_15139210
seq2: B6Ng01-277G03.b_44_1186 (reverse)

seq1  TCCTCAC-CTGTAAC-CTGTCTCTGTAATCTGCCCTCCCT-CCCCAACTC  47
      ||||||| |||||||  | |||||||| |||||||||||| ||||| || 
seq2  TCCTCACACTGTAACAGTATCTCTGTATTCTGCCCTCCCTCCCCCAGCTT  50

seq1  TCTTAAGTCCTTTC-TTTCCTCGCTGTCCTCATAAGAATTGGGCATATCC  96
      |||||||||||||| |||||| || ||||||||||||||  |||||||||
seq2  TCTTAAGTCCTTTCTTTTCCTGGCAGTCCTCATAAGAATGAGGCATATCC  100

seq1  TATCTCTGAC--TCATTCTGTTATCTC-TCTGAATTATCA-CTTTGCCCC  142
      ||||||||||   |||||||||||||| ||||| | |||| |||||||||
seq2  TATCTCTGACCTCCATTCTGTTATCTCTTCTGATTCATCACCTTTGCCCC  150

seq1  TCAATTAGATGTCACTTACAAACATGACTCTTCCTTCTATAAATGAACCT  192
      || |||||||||||||| |||||||||||||||||||||||||||||  |
seq2  TC-ATTAGATGTCACTTGCAAACATGACTCTTCCTTCTATAAATGAATGT  199

seq1  TACTTTCATTGTTTGGGATTAAACGTGTGTAATTAGGGTATGTCTGCATT  242
      ||| ||||||||||| ||||||| |||||||||||||| |||||||||||
seq2  TAC-TTCATTGTTTGAGATTAAAGGTGTGTAATTAGGGAATGTCTGCATT  248

seq1  CTAGCCAAATCACATAGGTCTAAGTGGTCTATGGATGTGATTCCTTGCCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAAATCACATAGGTCTAAGTGGTCTATGGATGTGATTCCTTGCCA  298

seq1  GAGACAATGTGTACTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTT  342
      ||||||||||||||         ||| |||||||||||| ||||||||||
seq2  GAGACAATGTGTAC---------TTTGTTTTGGTTTTTCTAGACAGGGTT  339

seq1  TCTCTGTATAGCTCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGG  392
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGG  389

seq1  CCTCCAACTCAGAAATCTGCCTGCCTCTGCCTCCCCAGAGCTGGGATTAA  442
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTCCAACTCAGAAATCTGCTTGCCTCTGCCTCCCCAGAGCTGGGATTAA  439

seq1  AGGCGTGTGCCACCACACCCGGCCAATGTACTTTTTAAATGTGGAAAATG  492
      |||||||  ||||||||||| ||||||||||||||||||  |||||||||
seq2  AGGCGTGCACCACCACACCCAGCCAATGTACTTTTTAAACATGGAAAATG  489

seq1  AGCTTTTTTCCCTGACCACAGCGAGATTGTTTTTATATGGTAGTAAAGCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTCCCTGACCACAGCGAGATTGTTTTTATATGGTAGTAAAGCA  539

seq1  AATTAACCACCTTGAATTTCAAAGAGAATGTATAAGTGTACATGTTCTAT  592
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTAACCACCTTGAATTTCAAAGAGAATGTATAAGTATACATGTTCTAT  589

seq1  ATATCTGTGTTCATTTCTTACAAGAGAAGCAGTTCTGTGTTCAATTTATA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTGTTCATTTCTTACAAGAGAAGCAGTTCTGTGTTCAATTTATA  639

seq1  CCTACTGCTTTCTTCCTGCTGTGAAATGGCAACTGTTGATAGATCATTGT  692
      ||||||||||||||  ||||||||||||||||||||||||||||||||| 
seq2  CCTACTGCTTTCTTTTTGCTGTGAAATGGCAACTGTTGATAGATCATTGA  689

seq1  GTTTTAAGATGTAATGGGTAGGGGACTATATTTTTATTTTACTTGGCATT  742
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  GTTTTAAGATGTAATGGGTAGGGGACTATATTTTGATTTCACTTGGCATT  739

seq1  AATCTGTAAAATGTCACTTAGACATATATGATAGCAACACTTGAAGTACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTAAAATGTCACTTAGACATATATGATAGCAACACTTGAAGTACT  789

seq1  ATGTAGCTTCTGTATCTCCGTATATGATTGCATGGCCTAATATCCTCTTG  842
      ||||||||||||||||||| ||||   |||||||| ||||||||||  ||
seq2  ATGTAGCTTCTGTATCTCCCTATACAGTTGCATGGGCTAATATCCTGCTG  839

seq1  TACCTGGACTCCTCATAACTGTATTTAAATTAACAACACTCACAGATCCT  892
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATCTGGACTCCTCATAACGGTATTTAAATTAACAACACTCACAGATCCT  889

seq1  AAAGTTACTGAAAATGTAAAT--TTCTCTTTGCTTTCTGATTTGAAAATT  940
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AAAGTTACTGAAAATGTAAATTCTTCTCTTTGCTTTCTGATTTGAAAATT  939

seq1  CAGCTAACACCTAAGACTTGTACTATATGGATTTTTCTTGTTATGTGTCC  990
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAACACCAAAGACTTGTACTATATGGATTTTTCTTGTTATGTGTCC  989

seq1  TGTTGGAAATTCCTGAAATTGTTAGCACCATCATAGAATTTCCAGAGTAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAATTCCTGAAATTGTTAGCACCATCATAGAATTTCCAGAGTAC  1039

seq1  TTGAAGTTGTATTTGCATAGTTGGACATAAAAGAATTTGTAGACAATGAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTGTATTTGCATAGTTGGACATAAAAGAATTTGTAGACAATGAT  1089

seq1  TCTCTCTTTTTTAATAAAATGAAAAATTTGAAAAATTTAATTCCATGTGA  1140
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCTCTTTTTTAATAAAATGAAAAATTTGAAAAATCTAATTCCATGTGA  1139

seq1  ATTC  1144
      ||||
seq2  ATTC  1143

seq1: chr5_15112602_15113389
seq2: B6Ng01-277G03.g_1_786

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50
                                                        
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  50

seq1  NNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTTTGTC  100
                     |||||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNGAATTCCTCTTCTCAGGTACAACTGGGTCTTTGTC  100

seq1  AAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATAAAATGCAAGAAACATATCGTGCAAATGAAACGGAAGCAGCA  150

seq1  TTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGTGCCTGTGGGTA  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGAAAGTCTGAGTAGCCGGTGGGCATCCCTGCACATGAGCCTGTGGGTA  200

seq1  GCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGATCAGCTGGTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCAT  250

seq1  GGTCGCTGTTCTAGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTTGT  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTCGCTGTTCTGGTGCTAAACCAGATTCTGGAGAAAGCTCTATTGTTGT  300

seq1  TAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCATCGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TAAGACTTGAGAGGAGCTTGGTGGCTGATTATGGGATGGATCCCCGGGTG  350

seq1  GGGTAGTCTCTGGATGGTCCATCCTTTCTTCTTAGCTTTGTCTCCGTAAC  400
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  GGGTAGTCTCTGGATGGTCCATCCTCTCGTCTTAGCTTTGTCTCCGTAAC  400

seq1  TCCTTCCATGGCTTTTTTGTTCCCTATTCTGACACTACTGCATATGCCAG  450
      ||||||||||    |||||||||||||||||| |||||||||||||||||
seq2  TCCTTCCATGAGAATTTTGTTCCCTATTCTGATACTACTGCATATGCCAG  450

seq1  CAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTTGCTGAAAGGACCTTGATATAGCTGTCTTGTGAGGCTATGCC  500

seq1  AGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCATCTATAGGATGGA  550
      ||| ||||||||  |||||||||||||||||||||||| |||||||||||
seq2  AGTACCTGGCAA--ACAGAAGTGGATGCTCACAGTCATTTATAGGATGGA  548

seq1  GCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGCCTCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAG  598

seq1  GGATCTGCAACCCTATAAGTGGAACAACAATATGAACTAACCAGTACCCC  650
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCC  648

seq1  CAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGAGCTTGTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTCGTCAGC  698

seq1  CAGCATTGGGAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCGCAG  750
      || |||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CATCATTGGAAAGAGAGGCCCCTAGGTCTTGCAAACTTTATATGCCACAG  748

seq1  TACAGGGCCAAGAAATAGGAGTGGGTGGGTGGGGGAGC  788
      |||||||||||||||| |||||||||||||||||||||
seq2  TACAGGGCCAAGAAATGGGAGTGGGTGGGTGGGGGAGC  786