BAC Information

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BAC

Clone NameB6Ng01-277O03
Chromosome5 (Build37)
Map Location 80,561,691 - 80,689,808
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277O03.bB6Ng01-277O03.g
ACCGA078279GA078280
length1,1561,116
definitionB6Ng01-277O03.b B6Ng01-277O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,688,651 - 80,689,808)(80,561,691 - 80,562,630)
sequence
gaattccaagttagttttcattttgtctgtcaatataatacacacttcaa
caaaacattaggagtttctatttctgaaaagtatccctggagattaaaaa
taaaaatatgttggcgtagaagagcttccaaaggacattatatgagtgtt
cttggctcctactctaattttttttctatccaaaggaagcatctttctgc
caaaatgatacaggtgtgacagcagacattccagcctgtgaactcttggg
tttacatctcagagatgtgtcttattttagaattggtactgattctttta
agtggaagtaggatgtgctcataaaaaccattgagaggaatgcaaatgcc
atctccattgcataccaagtttgttccaatatttctgatgcaacactgaa
tgcaggaatttagatgcatatgtttaatgttatacctatcccctgagagg
ctctgcaagaacctgaccaatatagatgcagatgcaagcagctaaccatc
agagtgagtgcagggaccacaatggaagaattaggggaaggactgaagga
gctgaaagcatttgcaaccccttaggaaaacaacaatatcaactaaccag
acccctgtacccagagctcccagggactaaattaccaaccaaagaataca
catggctccagctgcacatgtagcagggaattgacttacctggcatcact
atgaggggaggctcttggtcctgtggaggcttggtatcccagcgaaggag
gatgccagggcagtgaggcaggcgtgggtgagtggttgctgaggggaaac
agggaaggggacaacatttttaatgtaaataaataaaataaccaataata
gaggggataacatttgaaatgtaaataaaggcaatatccaataaaaaaga
aaaccattgatgttcactaatcttaaagctatacatataccctaattcgt
ggacttttataaagaaaagccagtgtgtctatgtgactgtgttttatgtt
tttctagtacactaatgtgatgtatgaatattcttgagaataacctaaaa
cattctatttcagtgattagatcgaagaatcacaggtacaatcttggcag
aggaattgagaaagtcaatggccaaatacaagatcatttagagaacatat
gttcca

gaattctcagttacacagtattcaggaaggaaagcagagatcatggagaa
gtgttactgtagaggaattttaactcagcatcatgggtgctctggtaagt
gttcaaacccaaagagcctctcagtatgtgtgatcctgcgggagtaccgt
acctttaatcccaaacagaggaagggaagttactttgtagaagaaagcag
atatgaattaaaatgatatccaattgtttggtagaaaagtgactaatcag
aaatatttgaaagagtatgtcagagatcggatgtatccagttctcacaag
aaatgtcaggaaagagaggccactttagaacaacccagagtgaataatga
agaaatagaagttaagtgatttgagtttgtgcaggcagtgagtccatgac
tcactgttcagttcatggaattcagtggcagtgttccccagcagagcaat
tcactgagtagccaagagaagacaatttgaatcagtcagcttggagaaga
gccagaacagctgatttgaaccagacaggcaagagttcagaaacaacaag
aaatatttagtttattcatcagtaaacttctgagacaacaattacatctg
gcaaacaaaagctaattttacatgttacttactatgttgttccttatgcc
tttctcagcctgcagtcatacagcatccaggaccaccagcttgagttcct
atgttctgcatctcccctggtggtgtctggatgtcacagatacaactgct
gggagcaggagtaggggtggctgggcaaagcccagaatgggacaatctgc
agtctgcatttcccttcagggtattatagcactgctgcacagcagctgaa
ggggaagaggggcctgcgacacaggcagcaatctggtgtgctttggagct
acagcccagtacagagagatcgagaggaggacttcttcgggagtcttagt
attgtagttctttagaggaaggcatccccctctgagaaactataatgagg
gctctccatcatgattagcttttcatagttatttatgagtgtggatgtga
gtgcatattcttaatcatgtgaacagataataattggaactattcatgga
gatagccagggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80688651_80689808
seq2: B6Ng01-277O03.b_45_1200 (reverse)

seq1  TGGAAC-TATGT--TCTAAATGATCTTGGTAATT-GCCATGAACTTTTCT  46
      |||||| |||||  ||||||||||||| ||| || |||||  || |||||
seq2  TGGAACATATGTTCTCTAAATGATCTT-GTATTTGGCCATTGAC-TTTCT  48

seq1  CATTTCTTCTGCCAAGA-TGTA-CTGTGA-TCTTCGATTCTAATCACTGA  93
      || ||| |||||||||| |||| |||||| ||||||| ||||||||||||
seq2  CAATTCCTCTGCCAAGATTGTACCTGTGATTCTTCGA-TCTAATCACTGA  97

seq1  AATAGAATGTTTTAGGTTATTCTTCAAGAATA-TCATAACATCACATTTA  142
      |||||||||||||||||||||| ||||||||| |||| |||||||| |||
seq2  AATAGAATGTTTTAGGTTATTC-TCAAGAATATTCAT-ACATCACA-TTA  144

seq1  GTGTACTTAGAAAAACATAAAACACAAGTCACATAGACACACTGGCTTTT  192
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGTAC-TAGAAAAACATAAAACAC-AGTCACATAGACACACTGGCTTTT  192

seq1  CTTTATAAAAGTCCACGAATTAGGGTATTATTGTATAGCTTTAAGATTAG  242
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  CTTTATAAAAGTCCACGAATTAGGGTAT--ATGTATAGCTTTAAGATTAG  240

seq1  TGAACATCAATGGTTTTCTTTTTTATTGGATATTGCCTTTATTTACATTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCAATGGTTTTCTTTTTTATTGGATATTGCCTTTATTTACATTT  290

seq1  CAAATGTTATCCCCTCTATTATTGGTTATTTTATTTATTTACATTAAAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTATCCCCTCTATTATTGGTTATTTTATTTATTTACATTAAAAA  340

seq1  TGTTGTCCCCTTCCCTGTTTCCCCTCAGCAACCACTCACCCACGCCTGCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCCCCTTCCCTGTTTCCCCTCAGCAACCACTCACCCACGCCTGCC  390

seq1  TCACTGCCCTGGCATCCTCCTTCGCTGGGATACCAAGCCTCCACAGGACC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCCTGGCATCCTCCTTCGCTGGGATACCAAGCCTCCACAGGACC  440

seq1  AAGAGCCTCCCCTCATAGTGATGCCAGGTAAGTCAATTCCCTGCTACATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTCCCCTCATAGTGATGCCAGGTAAGTCAATTCCCTGCTACATG  490

seq1  TGCAGCTGGAGCCATGTGTATTCTTTGGTTGGTAATTTAGTCCCTGGGAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGGAGCCATGTGTATTCTTTGGTTGGTAATTTAGTCCCTGGGAG  540

seq1  CTCTGGGTACAGGGGTCTGGTTAGTTGATATTGTTGTTTTCCTAAGGGGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTACAGGGGTCTGGTTAGTTGATATTGTTGTTTTCCTAAGGGGT  590

seq1  TGCAAATGCTTTCAGCTCCTTCAGTCCTTCCCCTAATTCTTCCATTGTGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGCTTTCAGCTCCTTCAGTCCTTCCCCTAATTCTTCCATTGTGG  640

seq1  TCCCTGCACTCACTCTGATGGTTAGCTGCTTGCATCTGCATCTATATTGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCACTCACTCTGATGGTTAGCTGCTTGCATCTGCATCTATATTGG  690

seq1  TCAGGTTCTTGCAGAGCCTCTCAGGGGATAGGTATAACATTAAACATATG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCTTGCAGAGCCTCTCAGGGGATAGGTATAACATTAAACATATG  740

seq1  CATCTAAATTCCTGCATTCAGTGTTGCATCAGAAATATTGGAACAAACTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAATTCCTGCATTCAGTGTTGCATCAGAAATATTGGAACAAACTT  790

seq1  GGTATGCAATGGAGATGGCATTTGCATTCCTCTCAATGGTTTTTATGAGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCAATGGAGATGGCATTTGCATTCCTCTCAATGGTTTTTATGAGC  840

seq1  ACATCCTACTTCCACTTAAAAGAATCAGTACCAATTCTAAAATAAGACAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTACTTCCACTTAAAAGAATCAGTACCAATTCTAAAATAAGACAC  890

seq1  ATCTCTGAGATGTAAACCCAAGAGTTCACAGGCTGGAATGTCTGCTGTCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGATGTAAACCCAAGAGTTCACAGGCTGGAATGTCTGCTGTCA  940

seq1  CACCTGTATCATTTTGGCAGAAAGATGCTTCCTTTGGATAGAAAAAAAAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTATCATTTTGGCAGAAAGATGCTTCCTTTGGATAGAAAAAAAAT  990

seq1  TAGAGTAGGAGCCAAGAACACTCATATAATGTCCTTTGGAAGCTCTTCTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAGGAGCCAAGAACACTCATATAATGTCCTTTGGAAGCTCTTCTA  1040

seq1  CGCCAACATATTTTTATTTTTAATCTCCAGGGATACTTTTCAGAAATAGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAACATATTTTTATTTTTAATCTCCAGGGATACTTTTCAGAAATAGA  1090

seq1  AACTCCTAATGTTTTGTTGAAGTGTGTATTATATTGACAGACAAAATGAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTAATGTTTTGTTGAAGTGTGTATTATATTGACAGACAAAATGAA  1140

seq1  AACTAACTTGGAATTC  1158
      ||||||||||||||||
seq2  AACTAACTTGGAATTC  1156


seq1: chr5_80561691_80562630
seq2: B6Ng01-277O03.g_260_1184

seq1  AGAAAGCAGATATGAATTAAAATGATATCCAATTGTTTGGTAGAAAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGATATGAATTAAAATGATATCCAATTGTTTGGTAGAAAAGTG  50

seq1  ACTAATCAGAAATATTTGAAAGAGTATGTCAGAGATCGGATGTATCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCAGAAATATTTGAAAGAGTATGTCAGAGATCGGATGTATCCAGT  100

seq1  TCTCACAAGAAATGTCAGGAAAGAGAGGCCACTTTAGAACAACCCAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAGAAATGTCAGGAAAGAGAGGCCACTTTAGAACAACCCAGAGT  150

seq1  GAATAATGAAGAAATAGAAGTTAAGTGATTTGAGTTTGTGCAGGCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGAAGAAATAGAAGTTAAGTGATTTGAGTTTGTGCAGGCAGTGA  200

seq1  GTCCATGACTCACTGTTCAGTTCATGGAATTCAGTGGCAGTGTTCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGACTCACTGTTCAGTTCATGGAATTCAGTGGCAGTGTTCCCCAG  250

seq1  CAGAGCAATTCACTGAGTAGCCAAGAGAAGACAATTTGAATCAGTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAATTCACTGAGTAGCCAAGAGAAGACAATTTGAATCAGTCAGCT  300

seq1  TGGAGAAGAGCCAGAACAGCTGATTTGAACCAGACAGGCAAGAGTTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGAGCCAGAACAGCTGATTTGAACCAGACAGGCAAGAGTTCAGA  350

seq1  AACAACAAGAAATATTTAGTTTATTCATCAGTAAACTTCTGAGACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAGAAATATTTAGTTTATTCATCAGTAAACTTCTGAGACAACAA  400

seq1  TTACATCTGGCAAACAAAAGCTAATTTTACATGTTACTTACTATGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTGGCAAACAAAAGCTAATTTTACATGTTACTTACTATGTTGTT  450

seq1  CCTTATGCCTTTCTCAGCCTGCAGTCATACAGCATCCAGGACCACCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGCCTTTCTCAGCCTGCAGTCATACAGCATCCAGGACCACCAGCT  500

seq1  TGAGTTCCTATGTTCTGCATCTCCCCTGGTGGTGTCTGGATGTCACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCTATGTTCTGCATCTCCCCTGGTGGTGTCTGGATGTCACAGAT  550

seq1  ACAACTGCTGGGAGCAGGAGTAGGGGTGGCTGGGCAAAGCCCAGAATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCTGGGAGCAGGAGTAGGGGTGGCTGGGCAAAGCCCAGAATGGG  600

seq1  ACAATCTGCAGTCTGCATTTCCCTTCAGGGTATTATAGCACTGCTGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTGCAGTCTGCATTTCCCTTCAGGGTATTATAGCACTGCTGCACA  650

seq1  GCAGGCTGAAGGGGAAAGAGGGGCCTGCGACACAGGCAGCAATCTGGTGT  700
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCA-GCTGAAGGGG-AAGAGGGGCCTGCGACACAGGCAGCAATCTGGTGT  698

seq1  GCTTTGGAGCTACAGCCCAGTAACAGAGAGATCGAGAGAAGGACTTCTTC  750
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  GCTTTGGAGCTACAGCCCAGT-ACAGAGAGATCGAGAGGAGGACTTCTTC  747

seq1  GGGAGTCTTAGTATTGTAGTTCTTTTAGAGGAAGGCAT-CCCCTCTGAGA  799
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  GGGAGTCTTAGTATTGTAGTTC-TTTAGAGGAAGGCATCCCCCTCTGAGA  796

seq1  AACTATAATGAAGGGGCTCTCCATCATGATTTAGCTTTTTCATAGTTATT  849
      |||||||||||  |||||||||||||||| ||||| ||||||||||||||
seq2  AACTATAATGA--GGGCTCTCCATCATGA-TTAGC-TTTTCATAGTTATT  842

seq1  TATTGAGTGTGGATGTGAGTGCATATTCTTTATTCAATGTGAACAAAGGA  899
      || ||||||||||||||||||||||||||| ||   |||||||||   ||
seq2  TA-TGAGTGTGGATGTGAGTGCATATTCTTAAT--CATGTGAACA---GA  886

seq1  TTATATAATTAGAGACTA-TCATGAGAATAGCCAGGGAGAGA  940
      |   |||||| || |||| |||||   |||||||||||||||
seq2  T--AATAATTGGA-ACTATTCATGGAGATAGCCAGGGAGAGA  925


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