BAC Information

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BAC

Clone NameB6Ng01-279F13
Chromosome5 (Build37)
Map Location 87,217,867 - 87,218,708
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279F13.bB6Ng01-279F13.g
ACCGA079350GA079351
length1,180844
definitionB6Ng01-279F13.b B6Ng01-279F13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctatagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagtaatcccactaaa
atcagggactaggcaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaagagatcaagggg
atacaaattggaaaggaggaaatcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatacctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaac
ctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatc
accatgcctgacctaaagctttactacagagcaattgtggtaaaaactgc
atggtactggtatagaaacagacaagtagaccaatggaatagaattgaag
acccagaaatgaacccacacacctatggtcacttgatctttgacaaggga
gctaaaaccatccagtggaagaaagacagcattttcaacaattggtggtg
cacaactgggttgttatcatgtagaagatgcgaatcgatccatacttatc
tccttgtactagtcaatctaaatgatcaaagacttcacataaaacagaga
cactgaaactaatataggagaagtgggcaaaggcttgaaggattggcaca
ggcaactctgaacagaacagccatgctggctgtcagatcggaaattgacc
atggaatccttaatgaacctctaaaggttc
gaattccaacggtttattacagcactgaaagaagctctaacagtcttctc
tacctttcctaatgcttagacctttttatacagttcctcctgttgtggtg
acccaaccataaaattacttttgttgctacttcataaccataagtttcct
agttatgactcttaatataagcatctggtatgcaggatatctgttatgtg
actcctgggaaagagtcaactcaacccacaggtttgaaggcaggagcaga
aaggcaagaaggaagcttctgagcaaaagaaggacaaaaacaggttcaga
gaagaaagagaagaacaggaaggagcacgatgaagatgaatgaagacaac
tggaggaagggaacagaaagaagaggaggaggagaaagtagacaacttaa
ttgagaatgggcagactgtggcatgggggaagtgaccacccacagatata
gcacaggtgcctgagatcaaaaataacctgaccagaatgatccaaaccat
ctctttccagactcagagtttataagtagagaagccagctttgcttcatt
tgaaggttatgattctttatacaagggtcggaaattcactgaaggaagac
cccatactcagatagtatgcaaaaacaaagattgtttatcctatagaaac
agataaaggcaggagttccttcttatagggaactgggtcacaggtgatca
gtggtctacattcccatgtcatgagcttctttctttctctctttctttct
ttctttctttctttctttctttctttctttctttctttcttgtttgtttg
tttgttttttgacacagggtttctctgtatagcctctggctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87217867_87218708
seq2: B6Ng01-279F13.g_66_908

seq1  GAATTCCAACGGTTTATTACAGCACTGAAAGAAGCTCTAACAGTCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACGGTTTATTACAGCACTGAAAGAAGCTCTAACAGTCTTCTC  50

seq1  TACCTTTCCTAATGCTTAGACCTTTTTATACAGTTCCTCCTGTTGTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCCTAATGCTTAGACCTTTTTATACAGTTCCTCCTGTTGTGGTG  100

seq1  ACCCAACCATAAAATTACTTTTGTTGCTACTTCATAACCATAAGTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCATAAAATTACTTTTGTTGCTACTTCATAACCATAAGTTTCCT  150

seq1  AGTTATGACTCTTAATATAAGCATCTGGTATGCAGGATATCTGTTATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGACTCTTAATATAAGCATCTGGTATGCAGGATATCTGTTATGTG  200

seq1  ACTCCTGGGAAAGAGTCAACTCAACCCACAGGTTTGAAGGCAGGAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGGAAAGAGTCAACTCAACCCACAGGTTTGAAGGCAGGAGCAGA  250

seq1  AAGGCAAGAAGGAAGCTTCTGAGCAAAAGAAGGACAAAAACAGGTTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGAAGGAAGCTTCTGAGCAAAAGAAGGACAAAAACAGGTTCAGA  300

seq1  GAAGAAAGAGAAGAACAGGAAGGAGCACGATGAAGATGAATGAAGACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAGAAGAACAGGAAGGAGCACGATGAAGATGAATGAAGACAAC  350

seq1  TGGAGGAAGGGAACAGAAAGAAGAGGAGGAGGAGAAAGTAGACAACTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGGGAACAGAAAGAAGAGGAGGAGGAGAAAGTAGACAACTTAA  400

seq1  TTGAGAATGGGCAGACTGTGGCATGGGGGAAGTGACCACCCACAGATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATGGGCAGACTGTGGCATGGGGGAAGTGACCACCCACAGATATA  450

seq1  GCACAGGTGCCTGAGATCAAAAATAACCTGACCAGAATGATCCAAACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTGCCTGAGATCAAAAATAACCTGACCAGAATGATCCAAACCAT  500

seq1  CTCTTTCCAGACTCAGAGTTTATAAGTAGAGAAGCCAGCTTTGCTTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGACTCAGAGTTTATAAGTAGAGAAGCCAGCTTTGCTTCATT  550

seq1  TGAAGGTTATGATTCTTTATACAAGGGTCGGAAATTCACTGAAGGAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTATGATTCTTTATACAAGGGTCGGAAATTCACTGAAGGAAGAC  600

seq1  CCCATACTCAGATAGTATGCAAAAACAAAGATTGTTTATCCTATAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACTCAGATAGTATGCAAAAACAAAGATTGTTTATCCTATAGAAAC  650

seq1  AGATAAAGGCAGGAGTTCCTTCTTATAGGGAACTGGGTCACAGGTGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGGCAGGAGTTCCTTCTTATAGGGAACTGGGTCACAGGTGATCA  700

seq1  GTGGTCTACATTCCCATGTCATGAGCTTCTTTCTTTCTCTCTTTCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTACATTCCCATGTCATGAGCTTCTTTCTTTCTCTCTTTCTTTCT  750

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGTTTGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGTTTGTTTG  800

seq1  TTTGTTTTTTGACACAGGGTTTCTCTGTATAG-CTCTGGCTGT  842
      |||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTGTTTTTTGACACAGGGTTTCTCTGTATAGCCTCTGGCTGT  843