BAC Information

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BAC

Clone NameB6Ng01-279H10
Chromosome5 (Build37)
Map Location 16,162,378 - 16,163,469
singlet/doubletsinglet
Overlap genenone
Upstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
Downstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279H10.bB6Ng01-279H10.g
ACCGA079439GA079440
length1,2251,079
definitionB6Ng01-279H10.b B6Ng01-279H10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtgggatgctcacagtcagctaatgggatggatcacagggctcc
caatggaggagctagagaaagtacccaaggagctaaagggatcttcaacc
ctataggtggaacaacattatgaactaacccagtaccctggaggctcttg
actctagctgcatatgttatcaaaagaatgggcctagtcggccatcactg
gaaaggagaggccattggaccacgcagaacttggtggtgcccggtacagg
gaacgcagtcaaggggggggacgtgggtgggctagggctacctctcgtgt
ggagtgacgcgatacgcgatgacga
gaattctcttaaataatgctatgaggaatgccagcctcactttttctgaa
cttcccacttccagtctctgaattagcatgatctctgtagctattaagtg
tattagtgccttcatgatgctgttgagataggaaacatattgcaaataaa
cacttgcagggcaattttgtgcaactgaattgattcattagctttctcat
agttcttccaaacagttaaaaagaagtttgaatagaacaagatacatttg
gtagttatggtacaagctctgaatgaaactaaaattgcacctgaaaatat
cacaaattagttattttcctctgctttcttaaaatactgtgacattcttt
gaactaatcagtgaacagaaaataacttatgtaaggattgattttaattt
ttttcatgctttttccctgtgcaattttaattgatttttaacgttgttgg
taatttttagtctgtatattcctgaatcagatatattaagatagaatgcc
aagcatcatcctttcaaatgtccatctccttacttgctctagctatttac
ttcataattaatagtttatgtccttgtagattatctacagatcagagcat
cacccttagttcctggctgtcatttgatcatgcacttatctttttctttc
tttctttttatttatttattattattttttgttttgttttgttttttgag
acagggtttctctgtgtagccctggctgtcctggaactcactttgtagac
caggctggcctcgaactcagaaatctgcctgcctctttcccccacctagt
gctgggaataaaggcgtgtgccaccatgcccggctttgatcatggactta
tgctgagttcaggcttggtgactgacttagcatcagactgtccactttat
atatttattctctaataagtaactatttaaacaataatattgtatctttt
gggaattttaaaatttactattacctgacattatataattatatgtgtgt
ataatatgtgtatgtgtgctgtgtttgtgtatttgtgatgatatgtatgc
tctatatgatgacatgagaataatttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16162378_16163469
seq2: B6Ng01-279H10.g_62_1140

seq1  GAATTCTCTTAAATAATGCTATGAGGAATGCCAGCCTCACTTTTTCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAAATAATGCTATGAGGAATGCCAGCCTCACTTTTTCTGAA  50

seq1  CTTCCCACTTCCAGTCTCTGAATTAGCATGATCTCTGTAGCTATTAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACTTCCAGTCTCTGAATTAGCATGATCTCTGTAGCTATTAAGTG  100

seq1  TATTAGTGCCTTCATGATGCTGTTGAGATAGGAAACATATTGCAAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTGCCTTCATGATGCTGTTGAGATAGGAAACATATTGCAAATAAA  150

seq1  CACTTGCAGGGCAATTTTGTGCAACTGAATTGATTCATTAGCTTTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCAGGGCAATTTTGTGCAACTGAATTGATTCATTAGCTTTCTCAT  200

seq1  AGTTCTTCCAAACAGTTAAAAAGAAGTTTGAATAGAACAAGATACATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCCAAACAGTTAAAAAGAAGTTTGAATAGAACAAGATACATTTG  250

seq1  GTAGTTATGGTACAAGCTCTGAATGAAACTAAAATTGCACCTGAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATGGTACAAGCTCTGAATGAAACTAAAATTGCACCTGAAAATAT  300

seq1  CACAAATTAGTTATTTTCCTCTGCTTTCTTAAAATACTGTGACATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTAGTTATTTTCCTCTGCTTTCTTAAAATACTGTGACATTCTTT  350

seq1  GAACTAATCAGTGAACAGAAAATAACTTATGTAAGGATTGATTTTAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAATCAGTGAACAGAAAATAACTTATGTAAGGATTGATTTTAATTT  400

seq1  TTTTCATGCTTTTTCCCTGTGCAATTTTAATTGATTTTTAACGTTGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGCTTTTTCCCTGTGCAATTTTAATTGATTTTTAACGTTGTTGG  450

seq1  TAATTTTTAGTCTGTATATTCCTGAATCAGATATATTAAGATAGAATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAGTCTGTATATTCCTGAATCAGATATATTAAGATAGAATGCC  500

seq1  AAGCATCATCCTTTCAAATGTCCATCTCCTTACTTGCTCTAGCTATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCATCCTTTCAAATGTCCATCTCCTTACTTGCTCTAGCTATTTAC  550

seq1  TTCATAATTAATAGTTTATGTCCTTGTAGATTATCTACAGATCAGAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATTAATAGTTTATGTCCTTGTAGATTATCTACAGATCAGAGCAT  600

seq1  CACCCTTAGTTCCTGGCTGTCATTTGATCATGCACTTATCTTTTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTAGTTCCTGGCTGTCATTTGATCATGCACTTATCTTTTTCTTTC  650

seq1  TTTCTTTTTATTTATTTATTATTATTTTTTGTTTTGTTTTGTTTTTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTATTTATTTATTATTATTTTTTGTTTTGTTTTGTTTTTTGAG  700

seq1  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAC  750

seq1  CAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTTTCCCCCACCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTTTCCCCCACCTAGT  800

seq1  GCTGGGAATAAAGGCGTGTGCCACCATGCCCGGCTTTGATCATGGACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAATAAAGGCGTGTGCCACCATGCCCGGCTTTGATCATGGACTTA  850

seq1  TGCTGAGTTCAGGCTTGGTGACTGACTTAGCATCAGACTGTCCACTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTTCAGGCTTGGTGACTGACTTAGCATCAGACTGTCCACTTTAT  900

seq1  ATATTTATTCTCTAATAAGTAACTATTTAAACAATAATATTGTATCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTCTCTAATAAGTAACTATTTAAACAATAATATTGTATCTTTT  950

seq1  -GGAATTTTAAAATTAACTATTACCTGAACAATTATAATAATTTTATATG  999
       |||||||||||||| ||||||||||||   ||||| ||||  |||||||
seq2  GGGAATTTTAAAATTTACTATTACCTGA--CATTAT-ATAA--TTATATG  995

seq1  TGTGTAT-ATATGTGTATGTGTGCTTGTGTTTGTGTAATTTTGTGAATGA  1048
      ||||||| |||||||||||||||| ||||||||||||  |||||| ||||
seq2  TGTGTATAATATGTGTATGTGTGC-TGTGTTTGTGTA--TTTGTG-ATGA  1041

seq1  TATTGTATGCTCTATAATTTAATGACATGAAGAATAAATTTGAG  1092
      || |||||||||||||   | |||||||| ||||| ||||||||
seq2  TA-TGTATGCTCTATA---TGATGACATG-AGAAT-AATTTGAG  1079