BAC Information

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BAC

Clone NameB6Ng01-279H11
Chromosome5 (Build37)
Map Location 114,019,926 - 114,167,048
singlet/doubletdoublet
Overlap geneCmklr1, LOC381707
Upstream geneMyo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik
Downstream geneD5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279H11.bB6Ng01-279H11.g
ACCGA079441GA079442
length1,170602
definitionB6Ng01-279H11.b B6Ng01-279H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,019,926 - 114,020,798)(114,166,447 - 114,167,048)
sequence
gaattcctggagagctgctggacttcagtctacactgagatcccagagaa
gtcaattctaataatggtgagagaatgcctcagtggcaggatagatgagc
ttgccagtgtgagtggggacaagcaggcaaaagctttcctcgaccaatgt
ccctttagaagggctgattccagaggtgtggcccagtgtcttagtcagag
tttctattcctgcacaaaacgtcatgaccaaaaaacaggttggggaggaa
agggttaattcagcttacacttccatgttgctgttcatcaccaaaggaag
tcaggacaggaactcacataggacaggaacctggaggcaggagctgatgc
agaggctatggagggatatttcttactagcttgcatcctttagcttgctc
agcttgcttgtttatagaacccagggatggctccacccacaatgggattg
ccctaccacaacgggatggccacacccacaatgaactggctccacccaca
atgggccctcctcccctgaggagtatgaggttgaggcaagctgatcagta
attgacagctggatctcacggaggcatttcctcaagggaggctcctttct
ctgtgacaactccagcctgtgtcaagctgacacaaaaccagccagtgcag
gcagatttagggtgaatcatcccacctcaagttgattcagtcagggaaac
cccttgcaagcttgcccagctacttgaatgtaattggttccagatgcagt
cagcttgatgatgctcaagattagccaggtctgatagctcggtgctcaag
attagccgtagctgggtctgacagctgtttccctctggctcctcagatgg
aagtgcagtgttcaggggctgcttccgccgacccaacaacctctccctgg
ccttgcccgtgtcaggctgccatgccaaacatgtctgtgggacaagtgtg
tggacctctgcacagagaaggtaagctggggcctgtttcacggtccctcg
ggaatgcggggggggagcagggtggcttactccacagattcgcgacctat
gaatgaagtcatagtaatgtcgtgggggcatacacctatgacgttagttg
gtcgtttccgggaattcaagacgatggaagccgcaagcaaggaggagttg
cctgcctgtgtctaacggtg
gaattcacattgatgacagtcctctgttggtgcagagaacaaacccaacc
ccacctccccgactccactttctggggaagctaaggatgcaagcattagt
ggtagttgcccctccttcctctcccatcccctttcccttctccctcgctc
ccgccctcccttctcagatccgcccccacctccagcagccttccctcatt
acaacagtctcctccctccctccgttctcagccccggccccattgcatcc
tttggagctttccatggtcctgaaatcagttgagcatcttcctatcaact
gtttacaaaggcagtgtgaacagtctcctctccctgggcggtctccccac
tctcctcagcgtggtggaaggagaataaattctcttctcctcgtgttgcc
agtgcattggttgccatagcagcagagagagcagatgaaagctaggctct
cacctaagtggaattaaaagccaccctcttgggggaacaaatggctccag
gaggaccctgagaactgaagagcattagtctattattgtttttatttttt
actcattcggtagggtgggatgaggttctgggaaggagaagaggtggggg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_114019926_114020798
seq2: B6Ng01-279H11.b_324_1212

seq1  TGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACATAGGACAGGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACATAGGACAGGAACC  50

seq1  TGGAGGCAGGAGCTGATGCAGAGGCTATGGAGGGATATTTCTTACTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAGGAGCTGATGCAGAGGCTATGGAGGGATATTTCTTACTAGCT  100

seq1  TGCATCCTTTAGCTTGCTCAGCTTGCTTGTTTATAGAACCCAGGGATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTTTAGCTTGCTCAGCTTGCTTGTTTATAGAACCCAGGGATGGC  150

seq1  TCCACCCACAATGGGATTGCCCTACCACAACGGGATGGCCACACCCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCACAATGGGATTGCCCTACCACAACGGGATGGCCACACCCACAA  200

seq1  TGAACTGGCTCCACCCACAATGGGCCCTCCTCCCCTGAGGAGTATGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGGCTCCACCCACAATGGGCCCTCCTCCCCTGAGGAGTATGAGGT  250

seq1  TGAGGCAAGCTGATCAGTAATTGACAGCTGGATCTCACGGAGGCATTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAAGCTGATCAGTAATTGACAGCTGGATCTCACGGAGGCATTTCC  300

seq1  TCAAGGGAGGCTCCTTTCTCTGTGACAACTCCAGCCTGTGTCAAGCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAGGCTCCTTTCTCTGTGACAACTCCAGCCTGTGTCAAGCTGAC  350

seq1  ACAAAACCAGCCAGTGCAGGCAGATTTAGGGTGAATCATCCCACCTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCAGCCAGTGCAGGCAGATTTAGGGTGAATCATCCCACCTCAAG  400

seq1  TTGATTCAGTCAGGGAAACCCCTTGCAAGCTTGCCCAGCTACTTGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCAGTCAGGGAAACCCCTTGCAAGCTTGCCCAGCTACTTGAATGT  450

seq1  AATTGGTTCCAGATGCAGTCAGCTTGATGATGCTCAAGATTAGCCAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTCCAGATGCAGTCAGCTTGATGATGCTCAAGATTAGCCAGGTC  500

seq1  TGATAGCTCGGTGCTCAAGATTAGCCGTAGCTGGGTCTGACAGCTGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTCGGTGCTCAAGATTAGCCGTAGCTGGGTCTGACAGCTGTTTC  550

seq1  CCTCTGGCTCCTCAGATGGAAGTGCAGTGTTCAGGGGCTGCTTCCGCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCTCCTCAGATGGAAGTGCAGTGTTCAGGGGCTGCTTCCGCCGA  600

seq1  CCCAACAACCTCTCCCTGGCCTTGCCCGTGTCA-GCTGCCATGCCAAACA  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCAACAACCTCTCCCTGGCCTTGCCCGTGTCAGGCTGCCATGCCAAACA  650

seq1  TGTCTGT-GGACAAGTGTGTGGACCTCTGCACAGAGAAGGTAAGCTGGGG  698
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGGGACAAGTGTGTGGACCTCTGCACAGAGAAGGTAAGCTGGGG  700

seq1  -CTG-TTCACGG-CCCTCGGG-ATGC--GGGGGGAGCAGGGTGGCTTACT  742
       ||| ||||||| |||||||| ||||  ||||||||||||||||||||||
seq2  CCTGTTTCACGGTCCCTCGGGAATGCGGGGGGGGAGCAGGGTGGCTTACT  750

seq1  -CACAGA-TCGCGACCTATG-ATGAGGTCATAGT-ATGTCGT-GGGGCAT  787
       |||||| |||||||||||| |||| |||||||| ||||||| |||||||
seq2  CCACAGATTCGCGACCTATGAATGAAGTCATAGTAATGTCGTGGGGGCAT  800

seq1  ACACCTATGACG-TAGTGTGTCGGTT-CGTGGATTCAAAGCAGTGG-AGC  834
      |||||||||||| ||||  |||| || || | ||||||  |  ||| |||
seq2  ACACCTATGACGTTAGTTGGTCGTTTCCGGGAATTCAAGACGATGGAAGC  850

seq1  CGCAGAGC-AGGAGGAGTTGCCTGCTTGTGTCTAACGGTG  873
      |||| ||| |||||||||||||||| ||||||||||||||
seq2  CGCA-AGCAAGGAGGAGTTGCCTGCCTGTGTCTAACGGTG  889

seq1: chr5_114166447_114167048
seq2: B6Ng01-279H11.g_62_663 (reverse)

seq1  CACCCCCACCTCTTCTCCTTCCCAGAACCTCATCCCACCCTACCGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACCTCTTCTCCTTCCCAGAACCTCATCCCACCCTACCGAATGA  50

seq1  GTAAAAAATAAAAACAATAATAGACTAATGCTCTTCAGTTCTCAGGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAATAAAAACAATAATAGACTAATGCTCTTCAGTTCTCAGGGTCC  100

seq1  TCCTGGAGCCATTTGTTCCCCCAAGAGGGTGGCTTTTAATTCCACTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGCCATTTGTTCCCCCAAGAGGGTGGCTTTTAATTCCACTTAGG  150

seq1  TGAGAGCCTAGCTTTCATCTGCTCTCTCTGCTGCTATGGCAACCAATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCTAGCTTTCATCTGCTCTCTCTGCTGCTATGGCAACCAATGCA  200

seq1  CTGGCAACACGAGGAGAAGAGAATTTATTCTCCTTCCACCACGCTGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAACACGAGGAGAAGAGAATTTATTCTCCTTCCACCACGCTGAGGA  250

seq1  GAGTGGGGAGACCGCCCAGGGAGAGGAGACTGTTCACACTGCCTTTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGAGACCGCCCAGGGAGAGGAGACTGTTCACACTGCCTTTGTAA  300

seq1  ACAGTTGATAGGAAGATGCTCAACTGATTTCAGGACCATGGAAAGCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGATAGGAAGATGCTCAACTGATTTCAGGACCATGGAAAGCTCCA  350

seq1  AAGGATGCAATGGGGCCGGGGCTGAGAACGGAGGGAGGGAGGAGACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGCAATGGGGCCGGGGCTGAGAACGGAGGGAGGGAGGAGACTGTT  400

seq1  GTAATGAGGGAAGGCTGCTGGAGGTGGGGGCGGATCTGAGAAGGGAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAGGGAAGGCTGCTGGAGGTGGGGGCGGATCTGAGAAGGGAGGGC  450

seq1  GGGAGCGAGGGAGAAGGGAAAGGGGATGGGAGAGGAAGGAGGGGCAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCGAGGGAGAAGGGAAAGGGGATGGGAGAGGAAGGAGGGGCAACTA  500

seq1  CCACTAATGCTTGCATCCTTAGCTTCCCCAGAAAGTGGAGTCGGGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATGCTTGCATCCTTAGCTTCCCCAGAAAGTGGAGTCGGGGAGGT  550

seq1  GGGGTTGGGTTTGTTCTCTGCACCAACAGAGGACTGTCATCAATGTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGGTTTGTTCTCTGCACCAACAGAGGACTGTCATCAATGTGAAT  600

seq1  TC  602
      ||
seq2  TC  602