BAC Information

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BAC

Clone NameB6Ng01-279I18
Chromosome5 (Build37)
Map Location 93,043,063 - 93,043,901
singlet/doubletsinglet
Overlap gene4932413O14Rik
Upstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e
Downstream geneShroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279I18.b
ACCGA079501
length840
definitionB6Ng01-279I18.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgctcttcctccctcccaatgaacatgaaatacacaatgtcg
ggaactgataaaatttacctccctcagacatactttaaaagcactaagta
aaattatactagttagaaagtaaagaaccaagatgtcaacatatcaaggt
gaatattgattaaacaggaaaatacgaataacctgtcctaagccaggtgt
ggtggcacacacctttaatctgagagcttgggaagcagaagcaagttgaa
ctctgtgagtttgaggccagcttgggcttcataagaaacctacctcaaat
aacaaaacaaagcaaaaccaaacaaaaccctatcttgtgtggttgttgtc
actttgacacaccctaaattcatctgaggaaggaaccacagttgatagaa
tgcctccttcagactggcctgtgcaaaagcctgtggtgcattttcttgat
tgatgactgatgtgggagggcctagctcactgagggagatgtcacccctg
gagagttgtgggaagccgcccccacattcaccgtcacaggatggcgctga
catcctgtgttctaagttggtaaacaaataatctgcgcatgagccaaggg
tatttactactacttgtactctgtttttcgcgtgaacgtcacctcgacca
tgggctgcagccaatcagggagtgatgcgtcctaggcaattgttgttctc
tttaaagaggaaaggagtttcgttttctcgctctcttgcttcgctctctc
ttgcttcttacactctggccccataagatgtaagcaataaagctttgccc
ataaaaattctggttgttgtgttcttcctggccggtcgtg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93043063_93043901
seq2: B6Ng01-279I18.b_41_878

seq1  GAATTCTATACTCAGTAGTCCCTCAAAATGAAGATGAAATACACAATGTC  50
      ||||||||| |||  |  ||||||  |||||| |||||||||||||||||
seq2  GAATTCTATGCTC-TTCCTCCCTCCCAATGAACATGAAATACACAATGTC  49

seq1  AGGAACTGAGAAAATTTACCACCCTCAGACATACATTAAAAGCACTAAGT  100
       |||||||| |||||||||| ||||||||||||| |||||||||||||||
seq2  GGGAACTGATAAAATTTACCTCCCTCAGACATACTTTAAAAGCACTAAGT  99

seq1  AAAATTATACTAGTTAGAAAGTAAAGAACCAAGATGTCAGCATATCAAGG  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAATTATACTAGTTAGAAAGTAAAGAACCAAGATGTCAACATATCAAGG  149

seq1  TGAATATTGATTAAACAGGAAAATACAAATAACCTGTCCTAAGCCAGGTG  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAATATTGATTAAACAGGAAAATACGAATAACCTGTCCTAAGCCAGGTG  199

seq1  TGGTGGCACACACCTTTAATCTGAGAGCTTGGGAAGCAGAAGCAAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCACACACCTTTAATCTGAGAGCTTGGGAAGCAGAAGCAAGTTGA  249

seq1  ACTCTGTGAGTTTGAGGCCAGCTTGGGCTTCATAAGAAACCTACCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGAGTTTGAGGCCAGCTTGGGCTTCATAAGAAACCTACCTCAAA  299

seq1  TAACAAAACAAAGCAAAACCAAACAAAACCCTATCTTGTATGGTTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TAACAAAACAAAGCAAAACCAAACAAAACCCTATCTTGTGTGGTTGTTGT  349

seq1  CAGTTTGACACAACCTAGATTCATCTGAGGAAGGAACCACAGTTGAGAGA  400
      || ||||||||| |||| |||||||||||||||||||||||||||| |||
seq2  CACTTTGACACACCCTAAATTCATCTGAGGAAGGAACCACAGTTGATAGA  399

seq1  ATGCCTCCATCAGACTGGCCTGTAGAAAAGCCTGTGGTGCATTTTCTTGA  450
      |||||||| ||||||||||||||  |||||||||||||||||||||||||
seq2  ATGCCTCCTTCAGACTGGCCTGTGCAAAAGCCTGTGGTGCATTTTCTTGA  449

seq1  TTGATGACTGATGTGGGAGGGCCTAGCTCACTGAGGGAGATGTCACCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGACTGATGTGGGAGGGCCTAGCTCACTGAGGGAGATGTCACCCCT  499

seq1  GGAGAGTTGTGGGAAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTG  550
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  GGAGAGTTGTGGGAAGCCGCCCCCACATTCACCGTCACAGGATGGCGCTG  549

seq1  ACATCCTGTGTTCTAAGTTGGTAAACAAATAATCTGCGCATGAGCCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGTGTTCTAAGTTGGTAAACAAATAATCTGCGCATGAGCCAAGG  599

seq1  GTATTTACGACTACTTGTACTCTGTTTTTCCCGTGAACGTCAGCTCGGCC  650
      |||||||| ||||||||||||||||||||| ||||||||||| |||| ||
seq2  GTATTTACTACTACTTGTACTCTGTTTTTCGCGTGAACGTCACCTCGACC  649

seq1  ATGGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCAATTGTTGTTCT  699

seq1  CTTTAAAGAGGAAAGGGGTTTCGTTTTCTCGCTCTCTTGCTTCGCTCTCT  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTTAAAGAGGAAAGGAGTTTCGTTTTCTCGCTCTCTTGCTTCGCTCTCT  749

seq1  CTTGCTTCTTACACTCTGGCCCCATAAGATGTAAGCAATAAAGCTTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTTACACTCTGGCCCCATAAGATGTAAGCAATAAAGCTTTGCC  799

seq1  GTAGAAGATTCTGGTTGTTGTGTTCTTCCTGGCCGGTCG  839
          || ||||||||||||||||||||||||||||||||
seq2  CATAAAAATTCTGGTTGTTGTGTTCTTCCTGGCCGGTCG  838